Name: Pantoea conspicua BD 805
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5016

Type strain:

Species: Pantoea conspicua

Strain Designation: BD 805

Culture col. no.: DSM 24241, CDC 3527-71, LMG 24534

Strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 805

NCBI tax ID(s): 472705 (species)

SI-ID 293429

LMG 24534

Section

Pantoea conspicua BD 805 is a mesophilic, motile human pathogen that was isolated from human blood.

motile
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea conspicua**
	Full Scientific Name (LPSN)	Pantoea conspicua Brady et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #69480]	Motility	yes Confidence in %98.196

Multimedia content

[Ref.: #17578]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17578]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #17578]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #17578]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17578]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.954

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17578]	Sample type/isolated from	human blood
[Ref.: #17578]	Geographic location (country and/or sea, region)	Paris
[Ref.: #17578]	Country	France
[Ref.: #17578]	Country ISO 3 Code	FRA
[Ref.: #17578]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU216737 (>99% sequence identity) for Pantoea from Microbeatlas

Aquatic Samples	948
Soil Samples	442
Animal Samples	4423
Plant Samples	1924
Total Samples	7737

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17578]	Pathogenicity (human)	yes, in single cases
[Ref.: #17578]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17578]	Pantoea conspicua strain LMG 24534 16S ribosomal RNA gene, partial sequence	EU216737	1344	ENA	472705 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pantoea conspicua LMG 24534	GCA_002095315	contig	GenBank	472705 tax ID	*
[Ref.: #66792]	Pantoea conspicua strain LMG 24534	472705.4	wgs	PATRIC	472705 tax ID	*
[Ref.: #66792]	Pantoea conspicua LMG 24534	2791355156	draft	JGI IMG/M	472705 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pantoea conspicua strain LMG 24534 PATRIC: 472705.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea conspicua strain LMG 24534 PATRIC: 472705.4
[Ref.: #69480]	gram-positive	no	98.233	no
[Ref.: #69480]	anaerobic	no	98.664	no
[Ref.: #69480]	halophile	no	84.992	no
[Ref.: #69480]	spore-forming	no	94.96	no
[Ref.: #69480]	glucose-util	yes	94.51	no
[Ref.: #69480]	aerobic	no	62.69	no
[Ref.: #69480]	flagellated	no	66.625	no
[Ref.: #69480]	thermophile	no	98.866	yes
[Ref.: #69480]	motile	yes	92.183	no
[Ref.: #69480]	glucose-ferment	yes	89.822	no

Availability in culture collections External links

[Ref.: #17578]

Culture collection no.

DSM 24241, CDC 3527-71, LMG 24534

[Ref.: #74511]

SI-ID 293429

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov.	Brady CL, Cleenwerck I, Venter SN, Engelbeen K, De Vos P, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.017301-0	2009	*

References

#17578

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24241

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74511

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293429.1 )

* These data were automatically processed and therefore are not curated

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Pantoea conspicua strain LMG 24534

Pantoea conspicua strain LMG 24534

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