Escherichia albertii (DSM 17582, CCUG 46494, CIP 107988)

Name: Escherichia albertii (DSM 17582, CCUG 46494, CIP 107988)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4932

Type strain

Strain Designation 19982

Culture col. no. DSM 17582 CCUG 46494 CIP 107988 LMG 20976 CCM 7160 4 more

NCBI tax ID(s) 1115511 208962

Special Collections DSMZ CCUG JCM CIP

History <- CIP; CIP 107988 <- CCUG; CCUG 46494 <- LMG; LMG 20976 <- G. Huys; <- M. J. Albert, Centre for Diarrhoeal Disease Research, Bangladesh; 19982 LMG 20976 <-- G. Huys R-14430 <-- M. J. Albert 19982 <-- Int. Centre for Diarrhoeal Dis. Res., Bangladesh. CIP <- 2003, CCUG <- 2002, D. Janssens, LMG, Ghent, Belgium <- G. Huys, Ghent, Belgium <- M.J. Albert

Links

Escherichia albertii 19982 is a facultative anaerobe, Gram-negative, rod-shaped human pathogen that was isolated from stool from diarrhoeal child.

Gram-negative rod-shaped facultative anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27677

NBRC 107761,LMG 20976,CCUG 46494,CIP 107988,CCM 7160,DSM 17582,JCM 17328

@ref 20215

Last LPSN update 2026-02-09 11:18:50

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Escherichia

Species Escherichia albertii

Full scientific name Escherichia albertii Huys et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116184	negative	rod-shaped
125438	negative		100
125439	negative		94.1

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7069	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33868	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
7069	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7069	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
116184	CIP Medium 72	Medium recipe at CIP
116184	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7069	positive	growth	30
33868	positive	growth	30
67770	positive	growth	30
116184	positive	growth	10-41
116184	negative	growth	5

Physiology and metabolism

Oxygen tolerance

116184

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
116184	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116184	4853 ChEBI	esculin	-	hydrolysis
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
116184	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
116184	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
116184	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
116184	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116184	17632 ChEBI	nitrate	+	reduction
116184	16301 ChEBI	nitrite	+	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
116184	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116184	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116184	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116184	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
116184	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116184	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
116184	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116184	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
116184	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116184	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116184	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
116184	oxidase	-
116184	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
116184	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116184	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7069	+	-	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	+/-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
7069	+	-	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116184	-	+	+	-	-	+	+	-	+	-	+	+	-	+	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116184	not determinedn.d.	+	-	+/-	+	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	+/-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116184	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	-	-	+	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Child

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
7069	stool from diarrhoeal child	Bangladesh	BGD	Asia	23.7772	90.3995 23.7772/90.3995
57234	Human feces,diarrheic child	Bangladesh	BGD	Asia
67770	Stool specimen of a diarrhoeal child in Bangladesh
116184	Human, Feces	Bangladesh	BGD	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
7069			2	Risk group (German classification) According to TRBA 466
116184			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	EaTS assembly for Escherichia albertii NBRC 107761 = DSM 17582	contig	GCA_022833075	1115511.6	8116685397	1115511	75.48
67770	ASM75977v1 assembly for Escherichia albertii NBRC 107761 = DSM 17582	contig	GCA_000759775	1115511.3	2602041909	1115511	31.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7069	Escherichia albertii 16S rRNA gene, type strain LMG 20976T	AJ508775	1494		1115511
124043	Escherichia albertii gene for 16S rRNA, partial sequence, strain: NBRC 107761.	AB682660	1467		1115511

GC content

@ref	GC-content (mol%)	Method
7069	50.6
67770	50.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Escherichia albertii NBRC 107761 = DSM 17582
NCBI: GCA_000759775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.60	no
125439	gram_stain	BacteriaNetⓘ	negative	94.10	no
125439	motility	BacteriaNetⓘ	yes	63.50	no
125439	spore_formation	BacteriaNetⓘ	no	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia albertii NBRC 107761
PATRIC: 1115511.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.78	no
125438	spore-forming	spore-formingⓘ	no	89.69	no
125438	aerobic	aerobicⓘ	no	69.31	yes
125438	thermophilic	thermophileⓘ	no	96.33	yes
125438	flagellated	motile2+ⓘ	yes	53.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Escherichia albertii as a Potential Enteropathogen in the Light of Epidemiological and Genomic Studies.	Leszczynska K, Swiecicka I, Daniluk T, Lebensztejn D, Chmielewska-Deptula S, Leszczynska D, Gawor J, Kliber M.	Genes (Basel)	10.3390/genes14071384	2023
Pathogenicity	Bacteria from gut microbiota associated with diarrheal infections in children promote virulence of Shiga toxin-producing and enteroaggregative Escherichia coli pathotypes.	Izquierdo M, Lopez J, Gallardo P, Vidal RM, Ossa JC, Farfan MJ.	Front Cell Infect Microbiol	10.3389/fcimb.2022.867205	2022
	Chicken Skin Decontamination of Thermotolerant Campylobacter spp. and Hygiene Indicator Escherichia coli Assessed by Viability Real-Time PCR.	Wulsten IF, Thieck M, Gohler A, Schuh E, Stingl K.	Pathogens	10.3390/pathogens11060706	2022
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Phylogeny	Biochemical properties of a newly described Escherichia species, Escherichia albertii.	Abbott SL, O'Connor J, Robin T, Zimmer BL, Janda JM.	J Clin Microbiol	10.1128/jcm.41.10.4852-4854.2003	2003
	Genetic Diversity and Expression of Intimin in Escherichia albertii Isolated from Humans, Animals, and Food.	Liu Q, Yang X, Sun H, Wang H, Sui X, Zhang P, Bai X, Xiong Y.	Microorganisms	10.3390/microorganisms11122843	2023
	Animal and bacterial viruses share conserved mechanisms of immune evasion.	Hobbs SJ, Nomburg J, Doudna JA, Kranzusch PJ.	Cell	10.1016/j.cell.2024.07.057	2024
Phylogeny	Isolation of a Tissierellaceae Bacterium Exhibiting a High Reduction Potential for Insoluble Indigo Dyes.	Tu Z, Yumoto I.	Microbes Environ	10.1264/jsme2.me24104	2025
	Myxobacteria isolated from recirculating aquaculture systems (RAS): ecology and significance as off-flavor producers.	Sodergren J, Noguera PM, Petersen MA, Jorgensen NOG, Podduturi R, Nicolaisen MH.	Appl Environ Microbiol	10.1128/aem.00757-25	2025
	Construction of Shale Gas Oil-Based Drilling Cuttings Degrading Bacterial Consortium and Their Degradation Characteristics.	Fan L, Gong X, Lv Q, Bin D, Wang L.	Microorganisms	10.3390/microorganisms12020318	2024
	Draft Genome Sequence of Xylaria hypoxylon DSM 108379, a Ubiquitous Fungus on Hardwood.	Buttner E, Liers C, Hofrichter M, Gebauer AM, Kellner H.	Microbiol Resour Announc	10.1128/mra.00845-19	2019
	Detection of Bacillus Species with Arsenic Resistance and Plant Growth Promoting Efficacy from Agricultural Soils of Nepal.	Magar LB, Rayamajhee B, Khadka S, Karki G, Thapa A, Yasir M, Thapa S, Panta OP, Sharma S, Poudel P.	Scientifica (Cairo)	10.1155/2022/9675041	2022
Genetics	Defining the Genome Features of Escherichia albertii, an Emerging Enteropathogen Closely Related to Escherichia coli.	Ooka T, Ogura Y, Katsura K, Seto K, Kobayashi H, Kawano K, Tokuoka E, Furukawa M, Harada S, Yoshino S, Seto J, Ikeda T, Yamaguchi K, Murase K, Gotoh Y, Imuta N, Nishi J, Gomes TA, Beutin L, Hayashi T.	Genome Biol Evol	10.1093/gbe/evv211	2015
Genetics	Genomic insights into novel predatory myxobacteria isolated from human feces.	Das J, Pal S, Negi A, Sundharam SS, Yadav A, Subramanian S, Sinha SK, Samanta J, Krishnamurthi S.	Microbiol Spectr	10.1128/spectrum.02147-24	2025
	The microbial-derived bile acid lithocholate and its epimers inhibit Clostridioides difficile growth and pathogenicity while sparing members of the gut microbiota.	Kisthardt SC, Thanissery R, Pike CM, Foley MH, Theriot CM.	J Bacteriol	10.1128/jb.00180-23	2023
	Characterization of trehalolipid biosurfactant produced by the novel marine strain Rhodococcus sp. SP1d and its potential for environmental applications.	Andreolli M, Villanova V, Zanzoni S, D'Onofrio M, Vallini G, Secchi N, Lampis S.	Microb Cell Fact	10.1186/s12934-023-02128-9	2023
Phylogeny	Myxobacterial Predation: A Standardised Lawn Predation Assay Highlights Strains with Unusually Efficient Predatory Activity.	Zwarycz AS, Whitworth DE.	Microorganisms	10.3390/microorganisms11020398	2023
Genetics	Isolation of Anaerobic Bromate-Reducing Bacteria Using Different Carbon Sources and Transcriptomic Insights From Klebsiella variicola Glu3.	Wang D, Wang Y, Lv X, Cai X, Iqbal W, Yang B, Zhou D, Rensing C, Mao Y.	Front Microbiol	10.3389/fmicb.2022.851844	2022
Metabolism	Chromosomal organization of biosynthetic gene clusters, including those of nine novel species, suggests plasticity of myxobacterial specialized metabolism.	Ahearne A, Phillips KE, Knehans T, Hoing M, Dowd SE, Stevens DC.	Front Microbiol	10.3389/fmicb.2023.1227206	2023
Phylogeny	Evaluating the occurrence of Escherichia albertii in chicken carcass rinses by PCR, Vitek analysis, and sequencing of the rpoB gene.	Lindsey RL, Fedorka-Cray PJ, Abley M, Turpin JB, Meinersmann RJ.	Appl Environ Microbiol	10.1128/aem.03681-14	2015
	In Silico and In Vitro Analyses Reveal Promising Antimicrobial Peptides from Myxobacteria.	Arakal BS, Whitworth DE, James PE, Rowlands R, Madhusoodanan NPT, Baijoo MR, Livingstone PG.	Probiotics Antimicrob Proteins	10.1007/s12602-022-10036-4	2023
	First Detection of Carbapenem-Resistant Escherichia fergusonii Strains Harbouring Beta-Lactamase Genes from Clinical Samples.	Adesina T, Nwinyi O, De N, Akinnola O, Omonigbehin E.	Pathogens	10.3390/pathogens8040164	2019
Metabolism	Development of Slowly Digestible Starch Derived alpha-Glucans with 4,6-alpha-Glucanotransferase and Branching Sucrase Enzymes.	Te Poele EM, Corwin SG, Hamaker BR, Lamothe LM, Vafiadi C, Dijkhuizen L.	J Agric Food Chem	10.1021/acs.jafc.0c01465	2020
	Insights into Broad-Specificity Starch Modification from the Crystal Structure of Limosilactobacillus Reuteri NCC 2613 4,6-alpha-Glucanotransferase GtfB.	Pijning T, Gangoiti J, Te Poele EM, Borner T, Dijkhuizen L.	J Agric Food Chem	10.1021/acs.jafc.1c05657	2021
	Phylogenomic Analysis Substantiates the gyrB Gene as a Powerful Molecular Marker to Efficiently Differentiate the Most Closely Related Genera Myxococcus, Corallococcus, and Pyxidicoccus.	Liu Y, Pei T, Yi S, Du J, Zhang X, Deng X, Yao Q, Deng MR, Zhu H.	Front Microbiol	10.3389/fmicb.2021.763359	2021
	Preparation of 4-(4'-Hydroxyanilino)-5-anilinophthalimide and 4,5-Bis-(4'-hydroxyanilino)-phthalimide by Microbial Hydroxylation.	Weidner S, Goeke K, Trinks U, Traxler P, Ucci-Stoll K, Ghisalba O.	Biosci Biotechnol Biochem	10.1271/bbb.63.1497	1999
	Assessment of heavy metal tolerance and biosorptive potential of Klebsiella variicola isolated from industrial effluents.	Afzal AM, Rasool MH, Waseem M, Aslam B.	AMB Express	10.1186/s13568-017-0482-2	2017
Genetics	Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.	Chen Z, Erickson DL, Meng J.	Int J Mol Sci	10.3390/ijms21239161	2020
Metabolism	Complete genome reveals genetic repertoire and potential metabolic strategies involved in lignin degradation by environmental ligninolytic Klebsiella variicola P1CD1.	Dos Santos Melo-Nascimento AO, Mota Moitinho Sant Anna B, Goncalves CC, Santos G, Noronha E, Parachin N, de Abreu Roque MR, Bruce T.	PLoS One	10.1371/journal.pone.0243739	2020
	Two PAAR Proteins with Different C-Terminal Extended Domains Have Distinct Ecological Functions in Myxococcus xanthus.	Liu Y, Wang J, Zhang Z, Wang F, Gong Y, Sheng DH, Li YZ.	Appl Environ Microbiol	10.1128/aem.00080-21	2021
Metabolism	An Orphan MbtH-Like Protein Interacts with Multiple Nonribosomal Peptide Synthetases in Myxococcus xanthus DK1622.	Esquilin-Lebron KJ, Boynton TO, Shimkets LJ, Thomas MG.	J Bacteriol	10.1128/jb.00346-18	2018
Metabolism	In silico prospection of microorganisms to produce polyhydroxyalkanoate from whey: Caulobacter segnis DSM 29236 as a suitable industrial strain.	Bustamante D, Segarra S, Tortajada M, Ramon D, Del Cerro C, Auxiliadora Prieto M, Iglesias JR, Rojas A.	Microb Biotechnol	10.1111/1751-7915.13371	2019
Enzymology	Characterization of uronate dehydrogenases catalysing the initial step in an oxidative pathway.	Pick A, Schmid J, Sieber V.	Microb Biotechnol	10.1111/1751-7915.12265	2015
Enzymology	A fast, reliable, and sensitive method for detection and quantification of Listeria monocytogenes and Escherichia coli O157:H7 in ready-to-eat fresh-cut products by MPN-qPCR.	Russo P, Botticella G, Capozzi V, Massa S, Spano G, Beneduce L.	Biomed Res Int	10.1155/2014/608296	2014
Metabolism	Self-identity barcodes encoded by six expansive polymorphic toxin families discriminate kin in myxobacteria.	Vassallo CN, Wall D.	Proc Natl Acad Sci U S A	10.1073/pnas.1912556116	2019
Phylogeny	Rapid genus- and species-specific identification of Cronobacter spp. by matrix-assisted laser desorption ionization-time of flight mass spectrometry.	Stephan R, Ziegler D, Pfluger V, Vogel G, Lehner A.	J Clin Microbiol	10.1128/jcm.00156-10	2010
Metabolism	Sibling Rivalry in Myxococcus xanthus Is Mediated by Kin Recognition and a Polyploid Prophage.	Dey A, Vassallo CN, Conklin AC, Pathak DT, Troselj V, Wall D.	J Bacteriol	10.1128/jb.00964-15	2016
Phylogeny	A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity.	Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T.	Nat Commun	10.1038/s41467-020-19929-w	2020
Phylogeny	Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the beta-D-glucuronidase gene.	Farnleitner AH, Kreuzinger N, Kavka GG, Grillenberger S, Rath J, Mach RL.	Appl Environ Microbiol	10.1128/aem.66.4.1340-1346.2000	2000
Phylogeny	Characterization of the Emerging Enteropathogen Escherichia Albertii Isolated from Urine Samples of Patients Attending Sapporo Area Hospitals, Japan.	Fujioka M, Yoshioka S, Ito M, Ahsan CR	Int J Microbiol	10.1155/2022/4236054	2022
	Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation.	Li F, Lu Q, Liao S, Tuo L, Liu S, Yang Q, Shen A, Sun C.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01631-6	2021
Genetics	Polyphasic taxonomy and genome mining of Desertivibrio insolitus gen. nov., sp. nov., a novel psychrotolerant pectin-degrading actinobacterium isolated from desert soil.	Li S, Liu J, He HH, Han JR, Huang J, Lian WH, Liu YH, Dong L, Li WJ.	Curr Res Microb Sci	10.1016/j.crmicr.2025.100438	2025
	Assessing hydrocarbon degradation capacity of Isoptericola peretonis sp. nov. and related species: a comparative study.	Vidal-Verdu A, Latorre-Perez A, Pascual J, Manes-Collado R, Nevot-Terraes A, Porcar M.	Front Microbiol	10.3389/fmicb.2025.1471121	2025
	Fungi under Modified Atmosphere-The Effects of CO₂ Stress on Cell Membranes and Description of New Yeast Stenotrophomyces fumitolerans gen. nov., sp. nov.	Heidler von Heilborn D, Reinmuller J, Yurkov A, Stehle P, Moeller R, Lipski A.	J Fungi (Basel)	10.3390/jof9101031	2023
Phylogeny	Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China.	Zhang YQ, Schumann P, Li WJ, Chen GZ, Tian XP, Stackebrandt E, Xu LH, Jiang CL.	Int J Syst Evol Microbiol	10.1099/ijs.0.63641-0	2005
Phylogeny	Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana.	Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu J	Int J Syst Evol Microbiol	10.1099/ijs.0.000228	2015
Phylogeny	Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children.	Huys G, Cnockaert M, Janda JM, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02475-0	2003

References

#7069	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17582
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33868	; Curators of the CIP;
#57234	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46494
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#116184	Collection of Institut Pasteur ; Curators of the CIP; CIP 107988
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Escherichia albertii (DSM 17582, CCUG 46494, CIP 107988)

Name and taxonomic classification

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Physiology and metabolism

Oxygen tolerance

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API 20E

API zym

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Genome browser: GCA_022833075

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