Escherichia hermannii (DSM 4560, ATCC 33650, CIP 103176)

Name: Escherichia hermannii (DSM 4560, ATCC 33650, CIP 103176)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4927

Type strain

Strain Designation 980-72

Culture col. no. DSM 4560 ATCC 33650 CIP 103176 CCUG 15714 CDC 980-72 9 more

NCBI tax ID(s) 1115512 565

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- ATCC; ATCC 33650 <- B. R. Davis; CDC 980-72 JCM <-- Y. Kosako 83024 <-- R. Sakazaki 82073 <-- D. J. Brenner CDC 980-72 <-- Louisiana State Health Dept., USA. CIP <- 1988, ATCC <- CDC: strain 980-72 <- Louisiana State Hlth. Dept., USA

Links

Escherichia hermannii 980-72 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Toe of 17-year old female.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13668

LMG 7867,ATCC 33650,CCUG 15714,NBRC 105704,CIP 103176,JCM 1473,NCTC 12129,DSM 4560,CCRC 13982,BCRC 13982,HAMBI 1693,CIP 104946,CNCTC 6253,CGMCC 1.3439

@ref 20215

Last LPSN update 2026-05-29 08:26:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Escherichia

Species Escherichia hermannii

Full scientific name Escherichia hermannii Brenner et al. 1983

Synonyms (2)

Atlantibacter hermannii
"Escherichia hermannii"

BacDive ID	Other strains from **Escherichia hermannii** (27)	Type strain
137285	E. hermannii 3103-85, CIP 104945
143727	E. hermannii CCUG 21148
143731	E. hermannii CCUG 21152
143732	E. hermannii CCUG 21153
143733	E. hermannii CCUG 21154
143734	E. hermannii CCUG 21155
143766	E. hermannii CCUG 21201
143767	E. hermannii CCUG 21202
144644	E. hermannii CCUG 26042
144788	E. hermannii CCUG 26553
144830	E. hermannii CCUG 26685
145877	E. hermannii CCUG 29871
151676	E. hermannii CCUG 44600 A
155595	E. hermannii CCUG 58290
163132	E. hermannii JCM 2133
163143	E. hermannii JCM 2134
163151	E. hermannii JCM 2135
163160	E. hermannii JCM 2136
176444	E. hermannii 107051, DSM 107051
176445	E. hermannii 108046, DSM 108046
176446	E. hermannii 108319, DSM 108319
176447	E. hermannii 108320, DSM 108320
176448	E. hermannii 108321, DSM 108321
176449	E. hermannii 108325, DSM 108325
176450	E. hermannii 108326, DSM 108326
176451	E. hermannii 110456, DSM 110456
176452	E. hermannii Dres_EscherHerm_17, DSM 119894

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
119884	negative	rod-shaped
125438	negative			99.5

Colony morphology

119884

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1719	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
1719	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40553	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119884	CIP Medium 72	Medium recipe at CIP
119884	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1719	positive	growth	37
40553	positive	growth	30
67770	positive	growth	37
119884	positive	growth	30-41
119884	negative	growth	5
119884	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119884	facultative anaerobe
125439	facultative anaerobe	91.016

Spore formation

@ref	Spore formation	Confidence
125439		97.336

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
119884	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	+	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
119884	17234 ChEBI	glucose	+	fermentation
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
119884	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
119884	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
119884	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
119884	17632 ChEBI	nitrate	+	reduction
119884	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
119884	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119884	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
119884	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119884	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
119884	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119884	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
119884	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119884	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119884	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119884	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119884	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
119884	oxidase	-
119884	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119884	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119884	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

46327

Fatty acid	Percentage	ECL
C16:0	34.1	16
C18:1 ω7c /12t/9t	18.4	17.824
C16:1 ω7c	17	15.819
C14:0 3OH/C16:1 ISO I	10	15.485
C17:0 CYCLO	7.1	16.888
C11:0 ISO 3OH	7	12.09
C14:0	2.4	14
unknown 14.503	1.3	14.503
unknown 13.961	1	13.961
C19:0 ISO	0.9	18.633
C18:0	0.8	18

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1719	+	-	-	+	-	-	-	-	+	+	-	+	+	-	-	+	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119884	-	+	+	+	-	+	+	-	+	-	+	+	-	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119884	not determinedn.d.	+/-	-	+/-	+	+	+	-	-	-	+	+	+	+	-	+	+	-	+	-	-	-	+	-	+	-	+/-	+	+	-	-	-	+	-	-	-	-	-	-	+/-	-	+/-	-	-	-	-	-	+	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119884	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	+	+	+	+	+	+	+	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	+	-	-	-	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body-Site	#Limb	#Foot
#Host	#Human	#Female

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
1719	Toe of 17-year old female		Louisiana State Health Dept.	USA	USA	North America
46327	Human infected toe,17-yr-old female	Homo sapiens	Louisiana	USA	USA	North America
67770	Infected toe of a 17-year-old female	Homo sapiens	LA	USA	USA	North America
119884	Human, Female, toe	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence JN175345 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	6
Soil Samples	10
Animal Samples	232
Plant Samples	5
Total Samples	253

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1719	2	Risk group (German classification) According to TRBA 466
119884	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1602785v1 assembly for Atlantibacter hermannii FDAARGOS_888	complete	GCA_016027855	565.17	8064422550	565	99.19
67770	ASM24801v2 assembly for Atlantibacter hermannii NBRC 105704	contig	GCA_000248015	1115512.3	2514752030	1115512	70.23
66792	29859_A01 assembly for Atlantibacter hermannii NCTC12129	complete	GCA_900635495	565.8	8117498504	565	60.47

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
1719	Escherichia hermannii strain CIP 103176 16S ribosomal RNA gene, complete sequence	JN175345	1478	565
67770	Escherichia hermannii gene for 16S rRNA, partial sequence, strain: NBRC 105704	AB682276	1467	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP858335	367	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP858281	711	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP858901	718	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP858924	718	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP859010	717	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP859387	713	565
124043	Atlantibacter hermannii strain CIP 103176 16S ribosomal RNA gene, partial sequence.	PP858978	720	565

GC content

@ref	GC-content (mol%)	Method
67770	52.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1602785v1 assembly for Atlantibacter hermannii FDAARGOS_888
NCBI: GCA_016027855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.02	no
125439	gram_stain	BacteriaNetⓘ	negative	86.35	no
125439	motility	BacteriaNetⓘ	yes	53.71	no
125439	spore_formation	BacteriaNetⓘ	no	97.34	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Atlantibacter hermannii NCTC12129
NCBI: GCA_900635495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	96.05	yes
125438	aerobic	aerobicⓘ	no	66.59	yes
125438	spore-forming	spore-formingⓘ	no	89.76	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	77.15	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 221: valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006562	2025
	A new understanding of Acanthamoeba castellanii: dispelling the role of bacterial pore-forming toxins in cyst formation and amoebicidal actions.	Yabrag A, Ullah N, Baryalai P, Ahmad I, Zlatkov N, Toh E, Lindback T, Uhlin BE, Wai SN, Nadeem A.	Cell Death Discov	10.1038/s41420-025-02345-8	2025
	Chicken Skin Decontamination of Thermotolerant Campylobacter spp. and Hygiene Indicator Escherichia coli Assessed by Viability Real-Time PCR.	Wulsten IF, Thieck M, Gohler A, Schuh E, Stingl K.	Pathogens	10.3390/pathogens11060706	2022
Enzymology	Evaluation of a novel real-time PCR test based on the ssrA gene for the identification of group B streptococci in vaginal swabs.	Wernecke M, Mullen C, Sharma V, Morrison J, Barry T, Maher M, Smith T.	BMC Infect Dis	10.1186/1471-2334-9-148	2009
Phylogeny	Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the beta-D-glucuronidase gene.	Farnleitner AH, Kreuzinger N, Kavka GG, Grillenberger S, Rath J, Mach RL.	Appl Environ Microbiol	10.1128/aem.66.4.1340-1346.2000	2000
Enzymology	Detection of Escherichia coli O157 by peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) and comparison to a standard culture method.	Almeida C, Almeida C, Sousa JM, Rocha R, Cerqueira L, Fanning S, Azevedo NF, Vieira MJ.	Appl Environ Microbiol	10.1128/aem.01009-13	2013
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
	Development of a Phage Cocktail to Control Proteus mirabilis Catheter-associated Urinary Tract Infections.	Melo LD, Veiga P, Cerca N, Kropinski AM, Almeida C, Azeredo J, Sillankorva S.	Front Microbiol	10.3389/fmicb.2016.01024	2016
	Antigenic relationships of the lipopolysaccharides of Escherichia hermannii strains with those of Escherichia coli O157:H7, Brucella melitensis, and Brucella abortus.	Perry MB, Bundle DR.	Infect Immun	10.1128/iai.58.5.1391-1395.1990	1990
Enzymology	Isolation of Escherichia fergusonii from four different sites in a patient with pancreatic carcinoma and cholangiosepsis.	Funke G, Hany A, Altwegg M.	J Clin Microbiol	10.1128/jcm.31.8.2201-2203.1993	1993
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Phylogeny	Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies.	Perez Luz S, Rodriguez-Valera F, Lan R, Reeves PR.	J Bacteriol	10.1128/jb.180.8.2144-2151.1998	1998
	Catheter-Related Bloodstream Infection in Hemodialysis Patient due to Atlantibacter hermannii.	Hristova PM, Alexandrova AS, Lucanov M, Hitkova HY, Borisov BK.	Case Rep Nephrol Dial	10.1159/000533581	2023
	Escherichia hermannii as the sole pathogen in urosepsis: case report.	Haasdijk RA, van Ingen J.	New Microbes New Infect	10.1016/j.nmni.2017.11.005	2018
Phylogeny	First report of isolation and antibiotic susceptibility pattern of Raoultella electrica from table eggs in Jaipur, India.	Jain AK, Yadav R.	New Microbes New Infect	10.1016/j.nmni.2017.11.004	2018
	Catheter Related Escherichia hermannii Sepsis in a Haemodialysis Patient.	Rank CU, Lommer Kristensen P, Schroder Hansen D, Brandi L.	Open Microbiol J	10.2174/1874285801610010001	2016
	Siccibacter turicensis from Kangaroo Scats: Possible Implication in Cellulose Digestion.	Dhakal S, Boath JM, Van TTH, Moore RJ, Macreadie IG.	Microorganisms	10.3390/microorganisms8050635	2020
Enzymology	Molecular and biochemical characterization of a novel class A beta-lactamase (HER-1) from Escherichia hermannii.	Beauchef-Havard A, Arlet G, Gautier V, Labia R, Grimont P, Philippon A.	Antimicrob Agents Chemother	10.1128/aac.47.8.2669-2673.2003	2003
	The catA1 chloramphenicol resistance gene originated in Atlantibacter hermannii.	Moran RA, Hall RM.	J Antimicrob Chemother	10.1093/jac/dkaf227	2025
	Investigation of Carriers of Salmonella and Other Hydrogen Sulphide-Positive Bacteria in the Digestive Content of Fish from the Atlantic Area of Macaronesia: A Comparative Study of Identification by API Gallery and MALDI-TOF MS.	Rosario Medina I, Suarez Benitez MA, Ojeda-Vargas MDM, Gallo K, Padilla Castillo D, Batista-Arteaga M, Deniz Suarez S, Diaz Rodriguez EL, Acosta-Hernandez B.	Animals (Basel)	10.3390/ani14223247	2024
	First case of bloodstream infection caused by NDM-positive Escherichia hermannii.	Lu B, Wang B, Pan X, Liu C, Jin C, Shi Y, Zhou Y.	BMC Infect Dis	10.1186/s12879-023-08336-3	2023
	The Use of Ceftazidime-Avibactam in a Pediatric Intensive Care Unit-An Observational Prospective Study.	Garcia Romero R, Fresan-Ruiz E, Guitart C, Bobillo-Perez S, Jordan I.	Antibiotics (Basel)	10.3390/antibiotics13111037	2024
	"Locking in" a rare pathogen.	Rege S, Chavan D, Soman R, Joe G.	Indian J Med Microbiol	10.1016/j.ijmmb.2022.02.001	2022
	Adenylate kinase gene polymerase chain reaction-restriction fragment length polymorphism to differentiate Escherichia coli, Escherichia fergusonii, and Citrobacter freundii: a molecular diagnostic study.	Dahal RH, Choi YJ, Kim B, Rana MS, Shin JH, Kim J, Kim S.	J Yeungnam Med Sci	10.12701/jyms.2025.42.52	2025
	Draft genome sequence of an Atlantibacter hermannii clinical strain isolated from human muscle tissue.	Feng Y, Feng Y, Zong Z.	Microbiol Resour Announc	10.1128/mra.00856-23	2024
	Microbial and heavy metal contamination in herbal medicine: a prospective study in the central region of Saudi Arabia.	Alharbi SF, Althbah AI, Mohammed AH, Alrasheed MA, Ismail M, Allemailem KS, Alnuqaydan AM, Baabdullah AM, Alkhalifah A.	BMC Complement Med Ther	10.1186/s12906-023-04307-y	2024
	Use of MALDI-TOF for identification and surveillance of gram-negative bacteria in captive wild psittacines.	Davies YM, Franco LS, Barbosa FB, Vanin CL, Gomes VTM, Moreno LZ, Barbosa MRF, Sato MIZ, Moreno AM, Knobl T.	Braz J Biol	10.1590/1519-6984.233523	2021
Genetics	Whole-genome characterization and antibiotic resistance phenotype of Escherichia marmotae first isolated from Berylmys bowersi.	Liu Y, Zhou J, Gu T, Ai W, Zhou J, Ma Q, Hu Y, Li S.	Microbiol Spectr	10.1128/spectrum.02946-24	2025
	Incidence of Drug-Resistant Enterobacteriaceae Strains in Organic and Conventional Watermelons Grown in Tennessee.	Akaeze O, Kilonzo-Nthenge A, Nandwani D, Mafiz A, Nzomo M, Aniume T.	Foods	10.3390/foods11213316	2022
Pathogenicity	Biogenic Synthesis of ZnO Nanoparticles and Its Potential Use as Antimicrobial Agent Against Multidrug-Resistant Pathogens.	Gad El-Rab SMF, Abo-Amer AE, Asiri AM.	Curr Microbiol	10.1007/s00284-020-01991-8	2020
	Sourdough bacterial dynamics revealed by metagenomic analysis in Brazil	Menezes LAA, Sardaro MLS, Duarte RTD, Mazzon RR, Neviani E, Gatti M, De Dea Lindner J.	Food Microbiol		2019
Phylogeny	Sourdough bacterial dynamics revealed by metagenomic analysis in Brazil.	Menezes LAA, Sardaro MLS, Duarte RTD, Mazzon RR, Neviani E, Gatti M, De Dea Lindner J.	Food Microbiol	10.1016/j.fm.2019.103302	2020
	Escherichia hermannii as the sole cause of osteomyelitis in a patient with an open tibial shaft fracture.	Compton J, Wynn M, Willey MC, Sekar P.	BMJ Case Rep	10.1136/bcr-2019-231206	2019
	Chemical Profiling and Biological Activities of Ruta montana Volatile Oil: In Vitro and In Silico ADME/Tox Assessment.	Benkhaira N, Hachlafi NE, Elbouzidi A, Addi M, Koraichi SI, Fikri-Benbrahim K.	Scientifica (Cairo)	10.1155/sci5/6077249	2025
	PICC-associated infection with Escherichia hermannii: A case report and review of the literature.	Sedlock C, Tokarczyk M, Sternlieb M, Flomenberg P.	IDCases	10.1016/j.idcr.2018.e00444	2018
	Differentiation of Escherichia fergusonii and Escherichia coli Isolated from Patients with Inflammatory Bowel Disease/Ischemic Colitis and Their Antimicrobial Susceptibility Patterns.	Dahal RH, Choi YJ, Kim S, Kim J.	Antibiotics (Basel)	10.3390/antibiotics12010154	2023
	Multidrug-Resistant Uropathogens Causing Community Acquired Urinary Tract Infections among Patients Attending Health Facilities in Mwanza and Dar es Salaam, Tanzania.	Silago V, Moremi N, Mtebe M, Komba E, Masoud S, Mgaya FX, Mirambo MM, Nyawale HA, Mshana SE, Matee MI.	Antibiotics (Basel)	10.3390/antibiotics11121718	2022
Genetics	Serological, phenotypic and molecular characterization of brucellosis in small ruminants in northern Algeria.	Nabi I, Achek R, Karim A, Melzer F, Brangsch H, Elschner MC, Neubauer H, El-Adawy H.	Front Microbiol	10.3389/fmicb.2024.1505294	2024
Phylogeny	Phylogenetics of family Enterobacteriaceae and proposal to reclassify Escherichia hermannii and Salmonella subterranea as Atlantibacter hermannii and Atlantibacter subterranea gen. nov., comb. nov.	Hata H, Natori T, Mizuno T, Kanazawa I, Eldesouky I, Hayashi M, Miyata M, Fukunaga H, Ohji S, Hosoyama A, Aono E, Yamazoe A, Tsuchikane K, Fujita N, Ezaki T.	Microbiol Immunol	10.1111/1348-0421.12374	2016
	Cefepime-taniborbactam demonstrates potent in vitro activity vs Enterobacterales with bla_OXA-48.	Mojica MF, Zeiser ET, Becka SA, Six DA, Moeck G, Papp-Wallace KM.	Microbiol Spectr	10.1128/spectrum.01144-24	2024
	Blood Stream Infection by Escherchia hermannii in a Neonate.	Sood S, Hemrajani SK.	J Clin Diagn Res	10.7860/jcdr/2016/15906.8304	2016
	Escherichia hermannii Infections in Humans: A Systematic Review.	Ioannou P.	Trop Med Infect Dis	10.3390/tropicalmed4010017	2019
	Antimicrobial Susceptibility Profile of Pathogenic and Commensal Bacteria Recovered from Cattle and Goat Farms.	Mukuna W, Aniume T, Pokharel B, Khwatenge C, Basnet A, Kilonzo-Nthenge A.	Antibiotics (Basel)	10.3390/antibiotics12020420	2023
	The interplay between antimicrobial resistance, heavy metal pollution, and the role of microplastics.	Balta I, Lemon J, Gadaj A, Cretescu I, Stef D, Pet I, Stef L, McCleery D, Douglas A, Corcionivoschi N.	Front Microbiol	10.3389/fmicb.2025.1550587	2025
	Gut microorganisms of Locusta migratoria in various life stages and its possible influence on cellulose digestibility.	Li K, Li W-J, Liang K, Li F-F, Qin G-Q, Liu J-H, Zhang Y-L, Li X-J.	mSystems	10.1128/msystems.00600-24	2024
	Shedding rate of Brucella spp. in the milk of seropositive and seronegative dairy cattle.	Abnaroodheleh F, Emadi A, Dashtipour S, Jamil T, Mousavi Khaneghah A, Dadar M.	Heliyon	10.1016/j.heliyon.2023.e15085	2023
	Smoothie Drinks: Possible Source of Resistant and Biofilm-Forming Microorganisms.	Silha D, Syrova P, Syrova L, Janeckova J.	Foods	10.3390/foods11244039	2022
	Vanadium Accumulation and Reduction by Vanadium-Accumulating Bacteria Isolated from the Intestinal Contents of Ciona robusta.	Yuliani D, Morishita F, Imamura T, Ueki T.	Mar Biotechnol (NY)	10.1007/s10126-024-10300-4	2024
	How to simply and efficiently screen microbial strains capable of anaerobic biosynthesis of biosurfactants: Method establishment, influencing factors and application example evaluation.	Zhao F, Wang Y, Hu X, Huang X.	Front Microbiol	10.3389/fmicb.2022.989998	2022
	Antimicrobials in dog-to-dog bite wounds: A retrospective study of 1526 dog bite events (1999-2019).	Kalnins NJ, Gibson JS, Stewart AJ, Croton C, Purcell SL, Rajapaksha B, Haworth M.	J Vet Intern Med	10.1111/jvim.16574	2022
	Nanomaterials for the Diagnosis and Treatment of Urinary Tract Infections.	Qindeel M, Barani M, Rahdar A, Arshad R, Cucchiarini M.	Nanomaterials (Basel)	10.3390/nano11020546	2021
	Assessment of potential pathogenic bacterial load and multidrug resistance in locally manufactured cosmetics commonly used in Dhaka metropolis.	Nusrat N, Ahmad Zahra M, Ahmed A, Haque F.	Sci Rep	10.1038/s41598-023-34782-9	2023
	First Case Report of Detection of Multidrug-Resistant Enterobacter hormaechei in Clinical Sample from an Aborted Ruminant.	Zaitsev SS, Khizhnyakova MA, Feodorova VA.	Microorganisms	10.3390/microorganisms10051036	2022
	Effectiveness of Extended Infection Control Measures on Methicillin-Resistant Staphylococcus aureus Infection Among Orthopaedic Patients.	Latha T, Bhat AK, Hande HM, Mukhopadhyay C, Devi ES, Nayak BS, George A.	Indian J Orthop	10.1007/s43465-022-00713-5	2022
Enzymology	Clonal Diversity of Klebsiella spp. and Escherichia spp. Strains Isolated from Patients with Ventilator-Associated Pneumonia.	Papajk J, Mezerova K, Uvizl R, Stosova T, Kolar M.	Antibiotics (Basel)	10.3390/antibiotics10060674	2021
	Production of indole by Corynebacterium glutamicum microbial cell factories for flavor and fragrance applications.	Mindt M, Beyraghdar Kashkooli A, Suarez-Diez M, Ferrer L, Jilg T, Bosch D, Martins Dos Santos V, Wendisch VF, Cankar K.	Microb Cell Fact	10.1186/s12934-022-01771-y	2022
	Despite Predominance of Uropathogenic/Extraintestinal Pathotypes Among Travel-acquired Extended-spectrum beta-Lactamase-producing Escherichia coli, the Most Commonly Associated Clinical Manifestation Is Travelers' Diarrhea.	Kantele A, Laaveri T, Mero S, Hakkinen IMK, Kirveskari J, Johnston BD, Johnson JR.	Clin Infect Dis	10.1093/cid/ciz182	2020
Enzymology	Use of quantitative microbiological analyses to trace origin of contamination of parenteral nutrition solutions.	Bhakdi S, Kramer I, Siegel E, Jansen B, Exner M.	Med Microbiol Immunol	10.1007/s00430-012-0236-3	2012
Phylogeny	Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system.	Richter SS, Sercia L, Branda JA, Burnham CA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Rychert JA, Westblade LF, Procop GW.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-013-1912-y	2013
	Improving the accuracy of coliform detection in meat products using modified dry rehydratable film method.	Kang JY, Lee SH, Jo AH, Park EJ, Bak YS, Kim JB.	Food Sci Biotechnol	10.1007/s10068-020-00778-8	2020
Enzymology	Recirculating packed-bed biofilm photobioreactor combined with membrane ultrafiltration as advanced wastewater treatment.	Diaz O, Gonzalez E, Vera L, Fernandez LJ, Diaz-Marrero AR, Fernandez JJ.	Environ Sci Pollut Res Int	10.1007/s11356-023-27309-2	2023
Enzymology	Biofilm-like structures and pathogenicity of Escherichia hermannii YS-11, a clinical isolate from a persistent apical periodontitis lesion.	Yamanaka T, Sumita-Sasazaki Y, Sugimori C, Matsumoto-Mashimo C, Yamane K, Mizukawa K, Yoshida M, Hayashi H, Nambu T, Leung KP, Fukushima H.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2010.00700.x	2010
Enzymology	Emerging Escherichia pathogen.	Kaewpoowat Q, Permpalung N, Sentochnik DE.	J Clin Microbiol	10.1128/jcm.00983-13	2013
Biotechnology	The Leaf Microbiome of Tobacco Plants across Eight Chinese Provinces.	Hu H, Liu Y, Huang Y, Zhang Z, Tang H.	Microorganisms	10.3390/microorganisms10020450	2022
Enzymology	The prevalence of the culturable human skin aerobic bacteria in Riyadh, Saudi Arabia.	Shami A, Al-Mijalli S, Pongchaikul P, Al-Barrag A, AbduRahim S.	BMC Microbiol	10.1186/s12866-019-1569-5	2019
	Comparison of the Peel-Associated Epiphytic Bacteria of Anthocyanin-Rich "Sun Black" and Wild-Type Tomatoes under Organic and Conventional Farming.	Gorrasi S, Pasqualetti M, Munoz-Palazon B, Novello G, Mazzucato A, Campiglia E, Fenice M.	Microorganisms	10.3390/microorganisms10112240	2022
	Undetectable Production of the VIM-1 Carbapenemase in an Atlantibacter hermannii Clinical Isolate.	Girlich D, Bonnin RA, Proust A, Naas T, Dortet L.	Front Microbiol	10.3389/fmicb.2021.741972	2021
	The Impact of Bacteriocenoses on Sperm Vitality, Immunological and Oxidative Characteristics of Ram Ejaculates: Does the Breed Play a Role?	Tvrda E, Kacaniova M, Balazi A, Vasicek J, Vozaf J, Jurcik R, Duracka M, Ziarovska J, Kovac J, Chrenek P.	Animals (Basel)	10.3390/ani12010054	2021
	Ruta montana L. from Morocco: comprehensive phytochemical analysis and exploration of its antioxidant, antimicrobial, anti-inflammatory and analgesic properties.	El Ouardi M, Drioiche A, Tagnaout I, Benouahi A, Al Kamaly O, Shahat AA, Fadoua EM, Nadia H, Sahpaz S, Zair T, Belghiti MA.	Front Chem	10.3389/fchem.2025.1614984	2025
	Opportunistic Infections in HIV-Infected Patients Differ Strongly in Frequencies and Spectra between Patients with Low CD4+ Cell Counts Examined Postmortem and Compensated Patients Examined Antemortem Irrespective of the HAART Era.	Powell MK, Benkova K, Selinger P, Dogosi M, Kinkorova Lunackova I, Koutnikova H, Lastikova J, Roubickova A, Spurkova Z, Laclova L, Eis V, Sach J, Heneberg P.	PLoS One	10.1371/journal.pone.0162704	2016
Enzymology	Escherichia hermannii as the sole isolate from a patient with purulent conjunctivitis.	Poulou A, Dimitroulia E, Markou F, Tsakris A.	J Clin Microbiol	10.1128/jcm.01119-08	2008
Pathogenicity	High prevalence of multidrug resistant Enterobacteriaceae isolated from outpatient urine samples but not the hospital environment in Bo, Sierra Leone.	Leski TA, Taitt CR, Bangura U, Stockelman MG, Ansumana R, Cooper WH, Stenger DA, Vora GJ.	BMC Infect Dis	10.1186/s12879-016-1495-1	2016
Phylogeny	Analysis of microbial diversity in Shenqu with different fermentation times by PCR-DGGE.	Liu T, Jia T, Chen J, Liu X, Zhao M, Liu P.	Braz J Microbiol	10.1016/j.bjm.2017.01.002	2017
	Different Flour Microbial Communities Drive to Sourdoughs Characterized by Diverse Bacterial Strains and Free Amino Acid Profiles.	Celano G, De Angelis M, Minervini F, Gobbetti M.	Front Microbiol	10.3389/fmicb.2016.01770	2016
	Escherichia vulneris: an unusual cause of complicated diarrhoea and sepsis in an infant. A case report and review of literature.	Jain S, Nagarjuna D, Gaind R, Chopra S, Debata PK, Dawar R, Sardana R, Yadav M.	New Microbes New Infect	10.1016/j.nmni.2016.07.002	2016
	Production of silver nanoparticles with strong and stable antimicrobial activity against highly pathogenic and multidrug resistant bacteria.	Saeb AT, Alshammari AS, Al-Brahim H, Al-Rubeaan KA.	ScientificWorldJournal	10.1155/2014/704708	2014
Pathogenicity	Antibiotic resistance profiles in cultivable microbiota isolated from some romanian natural fishery lakes included in Natura 2000 network.	Lazar V, Gheorghe I, Curutiu C, Savin I, Marinescu F, Cristea VC, Dobre D, Popa GL, Chifiriuc MC, Popa MI.	BMC Vet Res	10.1186/s12917-021-02770-8	2021
	Escherichia hermannii infection of a cephalohematoma: case report, review of the literature, and description of a novel invasive pathogen.	Dahl KM, Barry J, DeBiasi RL.	Clin Infect Dis	10.1086/342304	2002
	Leclercia adecarboxylata isolation: case reports and review.	Anuradha M.	J Clin Diagn Res	10.7860/jcdr/2014/9763.5260	2014
	Potential of 1-(1-napthylmethyl)-piperazine, an efflux pump inhibitor against cadmium-induced multidrug resistance in Salmonella enterica serovar Typhi as an adjunct to antibiotics.	Kaur UJ, Chopra A, Preet S, Raj K, Kondepudi KK, Gupta V, Rishi P.	Braz J Microbiol	10.1007/s42770-021-00492-5	2021
	Common epitopes in LPS of different Enterobacteriaceae are associated with an immune response against Escherichia coli O157 in bovine serum samples.	Navarro A, Eslava C, Garcia de la Torre G, Leon LA, Licona D, Leon L, Zarco LA, Cravioto A.	J Med Microbiol	10.1099/jmm.0.47201-0	2007
	Molecular Characterization of Baseline Enterobacterales and Pseudomonas aeruginosa Isolates from a Phase 3 Nosocomial Pneumonia (ASPECT-NP) Clinical Trial.	Castanheira M, Johnson MG, Yu B, Huntington JA, Carmelitano P, Bruno C, Rhee EG, Motyl M.	Antimicrob Agents Chemother	10.1128/aac.02461-20	2021
	Bacterial contamination of clothes and environmental items in a third-level hospital in Colombia.	Catano JC, Echeverri LM, Szela C.	Interdiscip Perspect Infect Dis	10.1155/2012/507640	2012
	Antimicrobial Synergy of Silver-Platinum Nanohybrids With Antibiotics.	Ranpariya B, Salunke G, Karmakar S, Babiya K, Sutar S, Kadoo N, Kumbhakar P, Ghosh S.	Front Microbiol	10.3389/fmicb.2020.610968	2020
	Molecular characteristics of extended-spectrum cephalosporin-resistant Enterobacteriaceae from humans in the community.	van Hoek AH, Schouls L, van Santen MG, Florijn A, de Greeff SC, van Duijkeren E.	PLoS One	10.1371/journal.pone.0129085	2015
Phylogeny	MALDI-TOF Mass Spectrometry: A Powerful Tool for Clinical Microbiology at Hôpital Principal de Dakar, Senegal (West Africa).	Lo CI, Fall B, Sambe-Ba B, Diawara S, Gueye MW, Mediannikov O, Sokhna C, Faye N, Dieme Y, Wade B, Raoult D, Fenollar F.	PLoS One	10.1371/journal.pone.0145889	2015
	Detection and Characterization of Enteropathogenic and Shiga Toxin-Producing Escherichia coli Strains in Rattus spp. from Buenos Aires.	Blanco Crivelli X, Bonino MP, Von Wernich Castillo P, Navarro A, Degregorio O, Bentancor A.	Front Microbiol	10.3389/fmicb.2018.00199	2018
	Identification of a specific surface epitope of OmpC for Escherichia coli O157:H7 with protein topology facilitated affinity mass spectrometry.	Wang W, Zhou X, Sang Y, Liang X, Liu J, Pan S, Wang L.	Appl Microbiol Biotechnol	10.1007/s00253-021-11511-8	2021
Pathogenicity	Escherichia hermannii: susceptibility pattern to beta-lactams and production of beta-lactamase.	Fitoussi F, Arlet G, Grimont PA, Lagrange P, Philippon A.	J Antimicrob Chemother	10.1093/jac/36.3.537	1995
Enzymology	Analysis of enterohemorrhagic Escherichia coli serotype O157:H7 by flow cytometry using monoclonal antibodies.	Kusunoki H, Kobayashi K, Kita T, Tajima T, Sugii S, Uemura T.	J Vet Med Sci	10.1292/jvms.60.1315	1998
Phylogeny	Characterization of Escherichia hermannii by ribosomal DNA restriction fragment length polymorphism.	Picard-Pasquier N, Picard B, Krishnamoorthy R, Goullet P.	Res Microbiol	10.1016/0923-2508(93)90056-8	1993
	Effect of postharvest UV-C treatment on the bacterial diversity of Ataulfo mangoes by PCR-DGGE, survival of E. coli and antimicrobial activity.	Fernandez-Suarez R, Ramirez-Villatoro G, Diaz-Ruiz G, Eslava C, Calderon M, Navarro-Ocana A, Trejo-Marquez A, Wacher C.	Front Microbiol	10.3389/fmicb.2013.00134	2013
Phylogeny	Optimization of routine identification of clinically relevant Gram-negative bacteria by use of matrix-assisted laser desorption ionization-time of flight mass spectrometry and the Bruker Biotyper.	Ford BA, Burnham CA.	J Clin Microbiol	10.1128/jcm.01803-12	2013
	Clinical characteristics, organ failure, inflammatory markers and prediction of mortality in patients with community acquired bloodstream infection.	Dat VQ, Long NT, Hieu VN, Phuc NDH, Kinh NV, Trung NV, van Doorn HR, Bonell A, Nadjm B.	BMC Infect Dis	10.1186/s12879-018-3448-3	2018
Enzymology	Isolations of Leclercia adecarboxylata from a patient with a chronically inflamed gallbladder and from a patient with sepsis without focus.	de Baere T, Wauters G, Huylenbroeck A, Claeys G, Peleman R, Verschraegen G, Allemeersch D, Vaneechoutte M.	J Clin Microbiol	10.1128/jcm.39.4.1674-1675.2001	2001
	Broadly reactive aptamers targeting bacteria belonging to different genera using a sequential toggle cell-SELEX.	Song MY, Nguyen D, Hong SW, Kim BC.	Sci Rep	10.1038/srep43641	2017
	Escherichia hermannii (ATCC 33651) polysaccharide-protein conjugates: comparison of two conjugation methods for the induction of humoral responses in mice.	Jacques I, Dubray G.	Vaccine	10.1016/0264-410x(91)90242-x	1991
Pathogenicity	Heavy Metal Induced Antibiotic Resistance in Bacterium LSJC7.	Chen S, Li X, Li X, Sun G, Zhang Y, Su J, Ye J.	Int J Mol Sci	10.3390/ijms161023390	2015
	Inflammatory Bowel Disease-Associated Changes in the Gut: Focus on Kazan Patients.	Lo Sasso G, Khachatryan L, Kondylis A, Battey JND, Sierro N, Danilova NA, Grigoryeva TV, Markelova MI, Khusnutdinova DR, Laikov AV, Salafutdinov II, Romanova YD, Siniagina MN, Vasiliev IY, Boulygina EA, Solovyeva VV, Garanina EE, Kitaeva KV, Ivanov KY, Chulpanova DS, Kletenkov KS, Valeeva AR, Odintsova AK, Ardatskaya MD, Abdulkhakov RA, Ivanov NV, Peitsch MC, Hoeng J, Abdulkhakov SR.	Inflamm Bowel Dis	10.1093/ibd/izaa188	2021
	Resistance determinants and their genetic context in enterobacteria from a longitudinal study of pigs reared under various husbandry conditions.	Poulin-Laprade D, Brouard JS, Gagnon N, Turcotte A, Langlois A, Matte JJ, Carrillo CD, Zaheer R, McAllister T, Topp E, Talbot G.	Appl Environ Microbiol	10.1128/aem.02612-20	2021
	Serological evidence of brucellosis in goats in kaduna north senatorial district of kaduna state, Nigeria.	Kaltungo BY, Saidu SN, Sackey AK, Kazeem HM.	ISRN Vet Sci	10.1155/2013/963673	2013
	A pseudoepidemic due to laboratory contamination deciphered by molecular analysis.	Morris T, Brecher SM, Fitzsimmons D, Durbin A, Arbeit RD, Maslow JN.	Infect Control Hosp Epidemiol	10.1086/647061	1995
	Commensal Escherichia coli Aggravates Acute Necrotizing Pancreatitis through Targeting of Intestinal Epithelial Cells.	Zheng J, Lou L, Fan J, Huang C, Mei Q, Wu J, Guo Y, Lu Y, Wang X, Zeng Y.	Appl Environ Microbiol	10.1128/aem.00059-19	2019
	Midgut microbial community of Culex quinquefasciatus mosquito populations from India.	Chandel K, Mendki MJ, Parikh RY, Kulkarni G, Tikar SN, Sukumaran D, Prakash S, Parashar BD, Shouche YS, Veer V.	PLoS One	10.1371/journal.pone.0080453	2013
Phylogeny	Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of enterococcus species in environmental samples.	Ryu H, Henson M, Elk M, Toledo-Hernandez C, Griffith J, Blackwood D, Noble R, Gourmelon M, Glassmeyer S, Santo Domingo JW.	Appl Environ Microbiol	10.1128/aem.02802-12	2013
Metabolism	Dominance of IMP-4-producing enterobacter cloacae among carbapenemase-producing Enterobacteriaceae in Australia.	Sidjabat HE, Townell N, Nimmo GR, George NM, Robson J, Vohra R, Davis L, Heney C, Paterson DL.	Antimicrob Agents Chemother	10.1128/aac.04378-14	2015
Phylogeny	[Characterization of Escherichia hermannii by electrophoresis of esterases, acid phosphatase and glutamate and malate dehydrogenases].	Goullet P, Picard B, Richard C.	Ann Inst Pasteur Microbiol (1985)	10.1016/s0769-2609(86)80036-9	1986
Pathogenicity	The Prevalence of Extended-Spectrum Beta-Lactamase-Producing Multidrug-Resistant Escherichia Coli in Poultry Chickens and Variation According to Farming Practices in Punjab, India.	Brower CH, Mandal S, Hayer S, Sran M, Zehra A, Patel SJ, Kaur R, Chatterjee L, Mishra S, Das BR, Singh P, Singh R, Gill JPS, Laxminarayan R.	Environ Health Perspect	10.1289/ehp292	2017
	Bacteremic infection with Pantoea ananatis.	De Baere T, Verhelst R, Labit C, Verschraegen G, Wauters G, Claeys G, Vaneechoutte M.	J Clin Microbiol	10.1128/jcm.42.9.4393-4395.2004	2004
Metabolism	Metal accumulation and vanadium-induced multidrug resistance by environmental isolates of Escherichia hermannii and Enterobacter cloacae.	Hernandez A, Mellado RP, Martinez JL.	Appl Environ Microbiol	10.1128/aem.64.11.4317-4320.1998	1998
Phylogeny	Evaluation of the MicroScan rapid neg ID3 panel for identification of Enterobacteriaceae and some common gram-negative nonfermenters.	O'Hara CM, Miller JM.	J Clin Microbiol	10.1128/jcm.38.10.3577-3580.2000	2000
	Development of amplified fragment length polymorphism-derived functional strain-specific markers to assess the persistence of 10 bacterial strains in soil microcosms.	Xiang SR, Cook M, Saucier S, Gillespie P, Socha R, Scroggins R, Beaudette LA.	Appl Environ Microbiol	10.1128/aem.00574-10	2010
Phylogeny	Development of a novel genus-specific real-time PCR assay for detection and differentiation of Bartonella species and genotypes.	Diaz MH, Bai Y, Malania L, Winchell JM, Kosoy MY.	J Clin Microbiol	10.1128/jcm.06621-11	2012
	A study of the prevalence of cytotoxic and non-cytotoxic Klebsiella oxytoca fecal colonization in two patient populations.	Smith SA, Campbell SJ, Webster D, Curley M, Leddin D, Forward KR.	Can J Infect Dis Med Microbiol	10.1155/2009/913895	2009
	Pathogenicity of exopolysaccharide-producing Actinomyces oris isolated from an apical abscess lesion.	Yamane K, Nambu T, Yamanaka T, Ishihara K, Tatami T, Mashimo C, Walker CB, Leung KP, Fukushima H.	Int Endod J	10.1111/j.1365-2591.2012.02099.x	2013
Phylogeny	The Changing Face of the Family Enterobacteriaceae (Order: "Enterobacterales"): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease Syndromes.	Janda JM, Abbott SL.	Clin Microbiol Rev	10.1128/cmr.00174-20	2021
	Serological cross-reactions between Escherichia coli O157 and other species of the genus Escherichia.	Rice EW, Sowers EG, Johnson CH, Dunnigan ME, Strockbine NA, Edberg SC.	J Clin Microbiol	10.1128/jcm.30.5.1315-1316.1992	1992
Enzymology	Nationwide prevalence and risk factors for faecal carriage of Escherichia coli O157 and O26 in very young calves and adult cattle at slaughter in New Zealand.	Jaros P, Cookson AL, Reynolds A, Prattley DJ, Campbell DM, Hathaway S, French NP.	Epidemiol Infect	10.1017/s0950268815003209	2016
Pathogenicity	Characterization of small ColE-like plasmids mediating widespread dissemination of the qnrB19 gene in commensal enterobacteria.	Pallecchi L, Riccobono E, Sennati S, Mantella A, Bartalesi F, Trigoso C, Gotuzzo E, Bartoloni A, Rossolini GM.	Antimicrob Agents Chemother	10.1128/aac.01160-09	2010
	Antibiogram and heavy metal tolerance of bullfrog bacteria in Malaysia.	Tee LW, Najiah M.	Open Vet J		2011
Phylogeny	Phenotypic and Phylogenetic Identification of Coliform Bacteria Obtained Using 12 Coliform Methods Approved by the U.S. Environmental Protection Agency.	Zhang Y, Zhang Y, Hong PY, LeChevallier MW, Liu WT.	Appl Environ Microbiol	10.1128/aem.01510-15	2015
Phylogeny	Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganisms.	Mazzeo MF, Sorrentino A, Gaita M, Cacace G, Di Stasio M, Facchiano A, Comi G, Malorni A, Siciliano RA.	Appl Environ Microbiol	10.1128/aem.72.2.1180-1189.2006	2006
Enzymology	Evaluation of high-throughput PCR and microarray-based assay in conjunction with automated DNA extraction instruments for diagnosis of sepsis.	Laakso S, Kirveskari J, Tissari P, Maki M.	PLoS One	10.1371/journal.pone.0026655	2011
Phylogeny	Use of clustered regularly interspaced short palindromic repeat sequence polymorphisms for specific detection of enterohemorrhagic Escherichia coli strains of serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by real-time PCR.	Delannoy S, Beutin L, Fach P.	J Clin Microbiol	10.1128/jcm.02097-12	2012
	Thermostable cross-protective subunit vaccine against Brucella species.	Cherwonogrodzky JW, Barabe ND, Grigat ML, Lee WE, Poirier RT, Jager SJ, Berger BJ.	Clin Vaccine Immunol	10.1128/cvi.00447-14	2014
Phylogeny	Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups.	Smati M, Clermont O, Le Gal F, Schichmanoff O, Jaureguy F, Eddi A, Denamur E, Picard B, Coliville Group.	Appl Environ Microbiol	10.1128/aem.01423-13	2013
Enzymology	Colonization of human wounds by Escherichia vulneris and Escherichia hermannii.	Pien FD, Shrum S, Swenson JM, Hill BC, Thornsberry C, Farmer JJ.	J Clin Microbiol	10.1128/jcm.22.2.283-285.1985	1985
	IS3 profiling identifies the enterohaemorrhagic Escherichia coli O-island 62 in a distinct enteroaggregative E. coli lineage.	Okeke IN, Macfarlane-Smith LR, Fletcher JN, Snelling AM.	Gut Pathog	10.1186/1757-4749-3-4	2011
Enzymology	ABC medium, a new chromogenic agar for selective isolation of Salmonella spp.	Perry JD, Ford M, Taylor J, Jones AL, Freeman R, Gould FK.	J Clin Microbiol	10.1128/jcm.37.3.766-768.1999	1999
	Efficacy of several serological tests and antigens for diagnosis of bovine brucellosis in the presence of false-positive serological results due to Yersinia enterocolitica O:9.	Munoz PM, Marin CM, Monreal D, Gonzalez D, Garin-Bastuji B, Diaz R, Mainar-Jaime RC, Moriyon I, Blasco JM.	Clin Diagn Lab Immunol	10.1128/cdli.12.1.141-151.2005	2005
	Production and characterization of monoclonal antibodies specific for the lipopolysaccharide of Escherichia coli O157.	Westerman RB, He Y, Keen JE, Littledike ET, Kwang J.	J Clin Microbiol	10.1128/jcm.35.3.679-684.1997	1997
Metabolism	Life based on phosphite: a genome-guided analysis of Desulfotignum phosphitoxidans.	Poehlein A, Daniel R, Schink B, Simeonova DD.	BMC Genomics	10.1186/1471-2164-14-753	2013
	Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae.	Putze J, Hennequin C, Nougayrede JP, Zhang W, Homburg S, Karch H, Bringer MA, Fayolle C, Carniel E, Rabsch W, Oelschlaeger TA, Oswald E, Forestier C, Hacker J, Dobrindt U.	Infect Immun	10.1128/iai.00522-09	2009
Enzymology	Identification of Gram-Negative Bacteria and Genetic Resistance Determinants from Positive Blood Culture Broths by Use of the Verigene Gram-Negative Blood Culture Multiplex Microarray-Based Molecular Assay.	Ledeboer NA, Lopansri BK, Dhiman N, Cavagnolo R, Carroll KC, Granato P, Thomson R, Butler-Wu SM, Berger H, Samuel L, Pancholi P, Swyers L, Hansen GT, Tran NK, Polage CR, Thomson KS, Hanson ND, Winegar R, Buchan BW.	J Clin Microbiol	10.1128/jcm.00581-15	2015
Pathogenicity	Triazole cross-resistance among Candida spp.: case report, occurrence among bloodstream isolates, and implications for antifungal therapy.	Magill SS, Shields C, Sears CL, Choti M, Merz WG.	J Clin Microbiol	10.1128/jcm.44.2.529-535.2006	2006
Phylogeny	Cryptic lineages of the genus Escherichia.	Walk ST, Alm EW, Gordon DM, Ram JL, Toranzos GA, Tiedje JM, Whittam TS.	Appl Environ Microbiol	10.1128/aem.01262-09	2009
Metabolism	The inhibitory spectrum of thermophilin 9 from Streptococcus thermophilus LMD-9 depends on the production of multiple peptides and the activity of BlpG(St), a thiol-disulfide oxidase.	Fontaine L, Hols P.	Appl Environ Microbiol	10.1128/aem.02030-07	2008
Metabolism	Characterization of the zinc-containing metalloprotease encoded by zpx and development of a species-specific detection method for Enterobacter sakazakii.	Kothary MH, McCardell BA, Frazar CD, Deer D, Tall BD.	Appl Environ Microbiol	10.1128/aem.02729-06	2007
Enzymology	Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1.	Bertoni G, Martino M, Galli E, Barbieri P.	Appl Environ Microbiol	10.1128/aem.64.10.3626-3632.1998	1998
	The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli.	Ren CP, Beatson SA, Parkhill J, Pallen MJ.	J Bacteriol	10.1128/jb.187.4.1430-1440.2005	2005
Genetics	Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.	McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W.	Nucleic Acids Res	10.1093/nar/28.24.4974	2000
	Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer.	Tang K, Lu YY, Sun F.	Front Microbiol	10.3389/fmicb.2018.00711	2018
Genetics	Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome.	Ravcheev DA, Moussu L, Smajic S, Thiele I.	Front Genet	10.3389/fgene.2019.00636	2019
Metabolism	Compartment and signal-specific codependence in the transcriptional control of Salmonella periplasmic copper homeostasis.	Pezza A, Pontel LB, Lopez C, Soncini FC.	Proc Natl Acad Sci U S A	10.1073/pnas.1603192113	2016
Phenotype	Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.	Meier-Kolthoff JP, Hahnke RL, Petersen J, Scheuner C, Michael V, Fiebig A, Rohde C, Rohde M, Fartmann B, Goodwin LA, Chertkov O, Reddy T, Pati A, Ivanova NN, Markowitz V, Kyrpides NC, Woyke T, Goker M, Klenk HP.	Stand Genomic Sci	10.1186/1944-3277-9-2	2014
	Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model.	Fodah RA, Scott JB, Tam HH, Yan P, Pfeffer TL, Bundschuh R, Warawa JM.	PLoS One	10.1371/journal.pone.0107394	2014
	Benzylidene acetal fragmentation route to 6-deoxy sugars: direct reductive cleavage in the presence of ether protecting groups, permitting the efficient, highly stereocontrolled synthesis of beta-D-rhamnosides from D-mannosyl glycosyl donors. Total synthesis of alpha-D-Gal-(1-->3)-alpha-D-Rha-(1-->3)- beta-D-Rha-(1-->4)-beta-D-Glu-OMe, the repeating unit of the antigenic lipopolysaccharide from Escherichia hermannii ATCC 33650 and 33652.	Crich D, Yao Q	J Am Chem Soc	10.1021/ja048070j	2004
Phylogeny	Atypical biogroups of Escherichia coli found in clinical specimens and description of Escherichia hermannii sp. nov.	Brenner DJ, Davis BR, Steigerwalt AG, Riddle CF, McWhorter AC, Allen SD, Farmer JJ, Saitoh Y, Fanning GR.	J Clin Microbiol	10.1128/jcm.15.4.703-713.1982	1982
Phylogeny	Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller.	van der Putten BCL, Matamoros S, Mende DR, Scholl ER, Consortium C, Schultsz C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004609	2021
Genetics	Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum beta-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces.	Potter RF, D'Souza AW, Wallace MA, Shupe A, Patel S, Gul D, Kwon JH, Beatty W, Andleeb S, Burnham CD, Dantas G.	Front Microbiol	10.3389/fmicb.2018.01629	2018
Phylogeny	Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana.	Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu J	Int J Syst Evol Microbiol	10.1099/ijs.0.000228	2015

References

#1719	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4560
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40553	; Curators of the CIP;
#46327	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15714
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119884	Collection of Institut Pasteur ; Curators of the CIP; CIP 103176
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Escherichia hermannii (DSM 4560, ATCC 33650, CIP 103176)

Name and taxonomic classification

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Physiology and metabolism

Oxygen tolerance

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