Marinobacter salsuginis (DSM 18347, CIP 109893, LMG 23697)

Name: Marinobacter salsuginis (DSM 18347, CIP 109893, LMG 23697)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 489

Type strain

Strain Designation SD-14B

Culture col. no. DSM 18347 CIP 109893 LMG 23697 SD-14B

NCBI tax ID(s) 418719

Special Collections DSMZ CIP Literature strains

History <- A. G. L. Antunes, Univ. Coimbra, Portugal; SD-14B <- A. G. L. Antunes and M. Taborda CIP <- 2008, DSMZ <- A.G.L. Antunes, Coimbra Univ., Coimbra, Portugal: strain SD-14B

Links

Marinobacter salsuginis SD-14B is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from brine–seawater interface.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 292702

LMG 23697,DSM 18347,CIP 109893

@ref 20215

Last LPSN update 2026-02-09 11:17:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter salsuginis

Full scientific name Marinobacter salsuginis Antunes et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32039	negative	3 µm	1 µm	rod-shaped
122406	negative			rod-shaped
125438	negative				98.494
125439	negative				99.6

Pigmentation

32039

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7518	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36402	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122406	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7518	positive	growth	28
32039	positive	growth	10-45
32039	positive	optimum	36
36402	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32039	positive	optimum	7.75
32039	positive	growth	6.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32039	facultative anaerobe
122406	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
32039
125439		99.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32039	NaCl	positive	growth	01-20 %
32039	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32039	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
32039	30089 ChEBI	acetate	+	carbon source
32039	16449 ChEBI	alanine	+	carbon source
32039	28757 ChEBI	fructose	+	carbon source
32039	5291 ChEBI	gelatin	+	carbon source
32039	17234 ChEBI	glucose	+	carbon source
32039	29987 ChEBI	glutamate	+	carbon source
32039	17754 ChEBI	glycerol	+	carbon source
32039	24996 ChEBI	lactate	+	carbon source
32039	25115 ChEBI	malate	+	carbon source
32039	506227 ChEBI	N-acetylglucosamine	+	carbon source
32039	17632 ChEBI	nitrate	+	reduction
122406	17632 ChEBI	nitrate	+	reduction
122406	16301 ChEBI	nitrite	-	reduction
32039	28044 ChEBI	phenylalanine	+	carbon source
32039	26271 ChEBI	proline	+	carbon source
32039	15361 ChEBI	pyruvate	+	carbon source
32039	30031 ChEBI	succinate	+	carbon source
32039	53424 ChEBI	tween 20	+	carbon source
32039	53423 ChEBI	tween 40	+	carbon source
32039	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122406	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
32039	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32039	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32039	catalase	+	1.11.1.6
122406	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32039	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
32039	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122406	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122406	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122406	-	+	-	+	+	+	+	-	-	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7518	brine–seawater interface	Shaban Deep, Red Sea	Saudi Arabia	SAU	Asia
122406	Environment, Brine-seawater interface	Shaban Deep, Red Sea	Saudi Arabia	SAU	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF028328 (>99% sequence identity) for Marinobacter salsuginis subclade from Microbeatlas

Aquatic Samples	943
Soil Samples	42
Animal Samples	50
Plant Samples	9
Total Samples	1044

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7518	1	Risk group (German classification) According to TRBA 466
122406	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	INSDC accession	BV-BRC accession
66792	Marinobacter salsuginis SD-14B	complete	2516653033	1260625	25.37
66792	ASM493669v1 assembly for Marinobacter salsuginis SD-14B	contig		1260625		GCA_004936695	1260625.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7518	Marinobacter salsuginis strain SD-14B 16S ribosomal RNA gene, partial sequence	EF028328	1487		1260625

GC content

7518

GC-content (mol%)55.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter salsuginis SD-14B
NCBI: GCA_004936695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	73.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter salsuginis SD-14B
PATRIC: 1260625.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	yes
125438	anaerobic	anaerobicⓘ	no	95.07	yes
125438	spore-forming	spore-formingⓘ	no	88.22	no
125438	aerobic	aerobicⓘ	yes	80.65	yes
125438	thermophilic	thermophileⓘ	no	98.96	yes
125438	flagellated	motile2+ⓘ	yes	87.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter halotolerans sp. nov., a halophilic bacterium isolated from a saltern crystallizing pond.	Kim JO, Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001653	2017
Phylogeny	Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment.	Rani S, Koh HW, Kim H, Rhee SK, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001587	2017
Phylogeny	Marinobacter salsuginis sp. nov., isolated from the brine-seawater interface of the Shaban Deep, Red Sea.	Antunes A, Franca L, Rainey FA, Huber R, Nobre MF, Edwards KJ, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijs.0.64862-0	2007

References

#7518	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18347
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28289	IJSEM 1040 2007 ( DOI 10.1099/ijs.0.64862-0 , PubMed 17473254 )
#32039	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28289
#36402	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122406	Collection of Institut Pasteur ; Curators of the CIP; CIP 109893
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter salsuginis (DSM 18347, CIP 109893, LMG 23697)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004936695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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