Name: Marinobacter gudaonensis SLO14B-61A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 488

Type strain:

Species: Marinobacter gudaonensis

Strain Designation: SLO14B-61A

Culture col. no.: DSM 18066, CGMCC 1.6294, CIP 109534, LMG 23509

Strain history: CIP <- 2007, DSMZ <- X.L. Wu, Tsinghua Univ., Beijing, China: strain SLO14B-61A

NCBI tax ID(s): 375760 (species)

SI-ID 290412

LMG 23509, CGMCC 1.6294, DSM 18066, CIP 109534

Special Collections

Section

When using BacDive for research please cite our paper

Marinobacter gudaonensis SLO14B-61A is a mesophilic, Gram-negative, motile bacterium that was isolated from from oil-polluted soil in Gudao Oil Product.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter gudaonensis**
	Full Scientific Name (LPSN)	Marinobacter gudaonensis Gu et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31849]	Gram stain	negative
[Ref.: #119751]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.494
[Ref.: #125439]	Gram stain	negative Confidence in %99.4

[Ref.: #31849]	Cell length	1.5 µm

[Ref.: #31849]	Cell width	0.4 µm

[Ref.: #31849]	Cell shape	rod-shaped
[Ref.: #119751]	Cell shape	rod-shaped

[Ref.: #31849]	Motility	yes
[Ref.: #119751]	Motility	yes

[Ref.: #31849]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7359]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7359]

Culture medium growth

[Ref.: #7359]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7359]

Culture medium composition

expand / minimize

[Ref.: #37277]

Culture medium

Marine agar (MA)

[Ref.: #37277]

Culture medium growth

[Ref.: #37277]

Culture medium composition

expand / minimize

[Ref.: #119751]

Culture medium

CIP Medium 13

[Ref.: #119751]

Culture medium growth

[Ref.: #119751]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7359]	growth	30 °C
[Ref.: #31849]	growth	10-45 °C
[Ref.: #31849]	optimum	27.5 °C
[Ref.: #37277]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31849]			optimum	7.75
[Ref.: #31849]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

no Confidence in %98.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31849]		NaCl		growth	0-15	%
[Ref.: #31849]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31849]	acetate ChEBI	+	carbon source
[Ref.: #31849]	alanine ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	dextrin ChEBI	+	carbon source
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	ethanol ChEBI	+	carbon source
[Ref.: #31849]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	glucose ChEBI	+	carbon source
[Ref.: #31849]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	maltose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	nitrate ChEBI	+	reduction
[Ref.: #119751]	nitrate ChEBI	+	reduction
[Ref.: #119751]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	proline ChEBI	+	carbon source
[Ref.: #31849]	propionate ChEBI	+	carbon source
[Ref.: #31849]	pyruvate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	succinate ChEBI	+	carbon source
[Ref.: #31849]	sucrose ChEBI	+	carbon source
[Ref.: #31849]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	tween 80 ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31849]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119751]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31849]	catalase	+	1.11.1.6
[Ref.: #119751]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31849]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119751]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119751]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119751]	11583	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119751]	11936	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7359]	Sample type/isolated from	from oil-polluted soil in Gudao Oil Product
[Ref.: #7359]	Geographic location (country and/or sea, region)	Shangdong, Shengli Oilfield
[Ref.: #7359]	Country	China
[Ref.: #7359]	Country ISO 3 Code	CHN
[Ref.: #7359]	Continent	Asia

[Ref.: #119751]	Sample type/isolated from	Environment, Soil, oil-polluted
[Ref.: #119751]	Geographic location (country and/or sea, region)	Gudao
[Ref.: #119751]	Country	China
[Ref.: #119751]	Country ISO 3 Code	CHN
[Ref.: #119751]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ414419 (>99% sequence identity) for Marinobacter gudaonensis subclade from Microbeatlas

Aquatic Samples	435
Soil Samples	36
Animal Samples	20
Plant Samples	12
Total Samples	503

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7359]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119751]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7359]	Marinobacter gudaonensis strain SL014B61A 16S ribosomal RNA gene, partial sequence	DQ414419	1501	GenBank ENA	375760 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter gudaonensis CGMCC 1.6294	GCA_900115175	scaffold	GenBank ENA	375760 tax ID	*
[Ref.: #66792]	Marinobacter gudaonensis strain CGMCC 1.6294	375760.4	wgs	PATRIC	375760 tax ID	*
[Ref.: #66792]	Marinobacter gudaonensis CGMCC 1.6294	2617270919	draft	JGI IMG/M	375760 tax ID	*

[Ref.: #7359]	GC-content	57.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31849]	GC-content	57.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter gudaonensis CGMCC 1.6294 NCBI: GCA_900115175.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.494	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.958	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	82.331	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.315	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.89	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.307	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter gudaonensis CGMCC 1.6294 NCBI: GCA_900115175
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	83.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	71.4

Availability in culture collections External links

[Ref.: #7359]

Culture collection no.

DSM 18066, CGMCC 1.6294, CIP 109534, LMG 23509

[Ref.: #70167]

SI-ID 290412

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain.	Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.007518-0	2009	*
Phylogeny	Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea.	Huo YY, Wang CS, Yang JY, Wu M, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000786-0	2008	*
Phylogeny	Marinobacter gudaonensis sp. nov., isolated from an oil-polluted saline soil in a Chinese oilfield.	Gu J, Cai H, Yu SL, Qu R, Yin B, Guo YF, Zhao JY, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64522-0	2007	*

References

#7359

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18066

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31849

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28113 (see below)

#37277 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290412.1 )

#119751 Collection of Institut Pasteur ; Curators of the CIP; CIP 109534

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28113

IJSEM 250 2007 ( DOI 10.1099/ijs.0.64522-0 , PubMed 17267959 )

* These data were automatically processed and therefore are not curated

Change proposal

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Marinobacter gudaonensis CGMCC 1.6294

Marinobacter gudaonensis CGMCC 1.6294

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Change proposal