Marinobacter gudaonensis (DSM 18066, CGMCC 1.6294, CIP 109534)

Name: Marinobacter gudaonensis (DSM 18066, CGMCC 1.6294, CIP 109534)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 488

Type strain

Strain Designation SLO14B-61A

Culture col. no. DSM 18066 CGMCC 1.6294 CIP 109534 LMG 23509 SLO14B-61A

NCBI tax ID(s) 375760

Special Collections DSMZ CIP Literature strains

History DSMZ <- X.-L. Wu; SLO14B-61A <- H. Cai CIP <- 2007, DSMZ <- X.L. Wu, Tsinghua Univ., Beijing, China: strain SLO14B-61A

Links

Marinobacter gudaonensis SLO14B-61A is a Gram-negative, motile, rod-shaped bacterium that was isolated from from oil-polluted soil in Gudao Oil Product.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290412

LMG 23509,CGMCC 1.6294,DSM 18066,CIP 109534

@ref 20215

Last LPSN update 2026-05-29 08:25:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter gudaonensis

Full scientific name Marinobacter gudaonensis Gu et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31849	negative	1.5 µm	0.4 µm	rod-shaped
119751	negative			rod-shaped
125439	negative				98.128
125438	negative				98.494

Pigmentation

31849

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7359	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37277	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119751	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7359	positive	growth	30
31849	positive	growth	10-45
31849	positive	optimum	27.5
37277	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
31849	positive	optimum	7.75
31849	positive	growth	6-9.5	alkaliphile

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.724

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31849	NaCl	positive	growth	0-15 %
31849	NaCl	positive	optimum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31849	30089 ChEBI	acetate	+	carbon source
31849	16449 ChEBI	alanine	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
31849	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
31849	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
31849	23652 ChEBI	dextrin	+	carbon source
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
31849	16236 ChEBI	ethanol	+	carbon source
31849	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31849	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31849	17234 ChEBI	glucose	+	carbon source
31849	17754 ChEBI	glycerol	+	carbon source
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31849	17306 ChEBI	maltose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
31849	17632 ChEBI	nitrate	+	reduction
119751	17632 ChEBI	nitrate	+	reduction
119751	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31849	26271 ChEBI	proline	+	carbon source
31849	17272 ChEBI	propionate	+	carbon source
31849	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
31849	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31849	30031 ChEBI	succinate	+	carbon source
31849	17992 ChEBI	sucrose	+	carbon source
31849	27082 ChEBI	trehalose	+	carbon source
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
31849	53426 ChEBI	tween 80	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
31849	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119751	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31849	catalase	+	1.11.1.6
119751	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31849	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119751	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119751	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119751	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119751	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7359	from oil-polluted soil in Gudao Oil Product	Shangdong, Shengli Oilfield	China	CHN	Asia
119751	Environment, Soil, oil-polluted	Gudao	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ414419 (>99% sequence identity) for Marinobacter gudaonensis subclade from Microbeatlas

Aquatic Samples	435
Soil Samples	36
Animal Samples	20
Plant Samples	12
Total Samples	503

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7359	1	Risk group (German classification) According to TRBA 466
119751	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270919 annotated assembly for Marinobacter gudaonensis CGMCC 1.6294	scaffold	GCA_900115175	375760.4	2617270919	375760	75.82

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7359	Marinobacter gudaonensis strain SL014B61A 16S ribosomal RNA gene, partial sequence	DQ414419	1501	375760
124043	Marinobacter gudaonensis strain CGMCC 1.6294(T) 16S ribosomal RNA gene, partial sequence.	MW111238	599	375760
124043	Marinobacter gudaonensis strain CGMCC 1.6294 16S ribosomal RNA gene, partial sequence.	MZ276314	1436	375760

GC content

@ref	GC-content (mol%)	Method
7359	57.9	thermal denaturation, midpoint method (Tm)
31849	57.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2617270919 annotated assembly for Marinobacter gudaonensis CGMCC 1.6294
NCBI: GCA_900115175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.57	no
125439	gram_stain	BacteriaNetⓘ	negative	98.13	no
125439	motility	BacteriaNetⓘ	yes	78.20	no
125439	spore_formation	BacteriaNetⓘ	no	99.72	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter gudaonensis CGMCC 1.6294
NCBI: GCA_900115175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	yes
125438	anaerobic	anaerobicⓘ	no	95.96	no
125438	aerobic	aerobicⓘ	yes	82.33	no
125438	spore-forming	spore-formingⓘ	no	87.32	no
125438	thermophilic	thermophileⓘ	no	97.89	yes
125438	flagellated	motile2+ⓘ	yes	89.31	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain.	Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.007518-0	2009
Phylogeny	Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea.	Huo YY, Wang CS, Yang JY, Wu M, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000786-0	2008
Phylogeny	Marinobacter gudaonensis sp. nov., isolated from an oil-polluted saline soil in a Chinese oilfield.	Gu J, Cai H, Yu SL, Qu R, Yin B, Guo YF, Zhao JY, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64522-0	2007

References

#7359	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18066
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28113	IJSEM 250 2007 ( DOI 10.1099/ijs.0.64522-0 , PubMed 17267959 )
#31849	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28113
#37277	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119751	Collection of Institut Pasteur ; Curators of the CIP; CIP 109534
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter gudaonensis (DSM 18066, CGMCC 1.6294, CIP 109534)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900115175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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