Marinobacter koreensis (DSM 17924, KACC 11513, DD-M3)

Name: Marinobacter koreensis (DSM 17924, KACC 11513, DD-M3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 485

Type strain

Strain Designation DD-M3

Culture col. no. DSM 17924 KACC 11513 DD-M3

NCBI tax ID(s) 335974

Special Collections DSMZ

Links

Marinobacter koreensis DD-M3 is a mesophilic prokaryote that was isolated from sea sand.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400114

NBRC 106396,DSM 17924

@ref 20215

Last LPSN update 2025-12-16 09:46:52

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter koreensis

Full scientific name Marinobacter koreensis Kim et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.994

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7250	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7250	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7250	sea sand	Pohang, Homo Cape	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ325514 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	499
Soil Samples	33
Animal Samples	18
Plant Samples	12
Total Samples	562

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7250	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2315628v1 assembly for Marinobacter koreensis DSM 17924	contig	GCA_023156285	335974.4	8046177795	335974	76.33
124043	ASM4265694v1 assembly for Marinobacter koreensis KACC 11513	contig	GCA_042656945			335974	75.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7250	Marinobacter koreensis strain DD-M3 16S ribosomal RNA gene, partial sequence	DQ325514	1463		335974

GC content

@ref	GC-content (mol%)	Method
7250	54.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter koreensis DSM 17924
NCBI: GCA_023156285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.99	no
125438	anaerobic	anaerobicⓘ	no	93.51	no
125438	aerobic	aerobicⓘ	yes	71.16	no
125438	spore-forming	spore-formingⓘ	no	89.41	no
125438	thermophilic	thermophileⓘ	no	97.85	yes
125438	flagellated	motile2+ⓘ	yes	89.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Identification and characterization of a novel hydrocarbon-degrading Marinobacter sp. PY97S].	Li Q, Cui Z, Zhao A, Gao W, Zheng L	Wei Sheng Wu Xue Bao		2011
Phylogeny	Marinobacter bohaiensis sp. nov., a moderate halophile isolated from benthic sediment of the Bohai Sea.	Xu S, Wang D, Wei Y, Cui Q, Li W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003025	2018
Phylogeny	Marinobacter oulmenensis sp. nov., a moderately halophilic bacterium isolated from brine of a salt concentrator.	Kharroub K, Aguilera M, Jimenez-Pranteda ML, Gonzalez-Paredes A, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.027284-0	2010
Phylogeny	Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment.	Handley KM, Hery M, Lloyd JR	Int J Syst Evol Microbiol	10.1099/ijs.0.003145-0	2009
Phylogeny	Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea.	Huo YY, Wang CS, Yang JY, Wu M, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000786-0	2008
Phylogeny	Marinobacter pelagius sp. nov., a moderately halophilic bacterium.	Xu XW, Wu YH, Wang CS, Yang JY, Oren A, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.65390-0	2008
Phylogeny	Marinobacter koreensis sp. nov., isolated from sea sand in Korea.	Kim BY, Weon HY, Yoo SH, Kim JS, Kwon SW, Stackebrandt E, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64231-0	2006

References

#7250	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17924
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter koreensis (DSM 17924, KACC 11513, DD-M3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023156285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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