Name: Marinobacter flavimaris SW145
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 481

Type strain:

Species: Marinobacter flavimaris

Strain Designation: SW145

Culture col. no.: DSM 16070, JCM 12323, CGMCC 1.8487, KCTC 12185

Strain history: J.-H. Yoon SW-145.

NCBI tax ID(s): 262076 (species)

Section

Marinobacter flavimaris SW145 is an anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sea water of tidal flat.

colony-forming
Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter flavimaris**
	Full Scientific Name (PNU)	Marinobacter flavimaris Yoon et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #23298]	Gram stain	negative
[Ref.: #23298]	Cell length	1.5-3.0 µm
[Ref.: #23298]	Cell width	0.6-0.9 µm
[Ref.: #23298]	Cell shape	rod-shaped
[Ref.: #23298]	Motility	yes
[Ref.: #23298]	Flagellum arrangement	monotrichous, polar

[Ref.: #23298]	Colony size	1-2 mm
[Ref.: #23298]	Colony color	cream
[Ref.: #23298]	Colony shape	circular
[Ref.: #23298]	Incubation period	3 days
[Ref.: #23298]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6256]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6256]

Culture medium growth

[Ref.: #6256]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #6256]

Culture medium composition

expand / minimize

[Ref.: #23298]

Culture medium

Marine agar (MA)

[Ref.: #23298]

Culture medium growth

[Ref.: #37266]

Culture medium

Marine agar (MA)

[Ref.: #37266]

Culture medium growth

[Ref.: #37266]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6256]	growth	30 °C
[Ref.: #23298]	growth	4 °C
[Ref.: #23298]	maximum	45 °C
[Ref.: #23298]	optimum	37 °C
[Ref.: #37266]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #6256]	Temperature range	mesophilic
[Ref.: #23298]	Temperature range	psychrophilic
[Ref.: #23298]	Temperature range	thermophilic
[Ref.: #23298]	Temperature range	mesophilic
[Ref.: #37266]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #23298]		optimum	7.0-8.0
[Ref.: #23298]		growth	5.5
[Ref.: #23298]	no	growth	5.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23298]

Oxygen tolerance

anaerobe

[Ref.: #23298]

Ability of spore formation

[Ref.: #23298]

Halophily / tolerance level

slightly halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #23298]	NaCl		optimum	2-6	%
[Ref.: #23298]	NaCl		growth	20	%
[Ref.: #23298]	NaCl	no	growth	>21	%
[Ref.: #23298]	NaCl	no	growth	0	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23298]	aspartate ChEBI	-	assimilation
[Ref.: #23298]	casein	-	hydrolysis
[Ref.: #23298]	cellobiose ChEBI	-	builds acid from
[Ref.: #23298]	D-fructose ChEBI	+	assimilation
[Ref.: #23298]	D-fructose ChEBI	+	builds acid from
[Ref.: #23298]	D-galactose ChEBI	-	builds acid from
[Ref.: #23298]	D-gluconate ChEBI	+	assimilation
[Ref.: #23298]	D-glucose ChEBI	-	assimilation
[Ref.: #23298]	D-glucose ChEBI	-	builds acid from
[Ref.: #23298]	D-mannitol ChEBI	-	assimilation
[Ref.: #23298]	D-mannitol ChEBI	-	builds acid from
[Ref.: #23298]	D-mannose ChEBI	-	builds acid from
[Ref.: #23298]	D-ribose ChEBI	-	builds acid from
[Ref.: #23298]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #23298]	D-trehalose ChEBI	-	builds acid from
[Ref.: #23298]	D-xylose ChEBI	-	builds acid from
[Ref.: #23298]	dl-alanine ChEBI	-	assimilation
[Ref.: #23298]	esculin ChEBI	-	hydrolysis
[Ref.: #23298]	gelatin ChEBI	-	hydrolysis
[Ref.: #23298]	glycerol ChEBI	-	carbon source
[Ref.: #23298]	glycerol ChEBI	-	energy source
[Ref.: #23298]	hexadecane ChEBI	-	carbon source
[Ref.: #23298]	hexadecane ChEBI	-	energy source
[Ref.: #23298]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #23298]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23298]	L-arginine ChEBI	-	assimilation
[Ref.: #23298]	L-glutamate ChEBI	-	assimilation
[Ref.: #23298]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #23298]	L-serine ChEBI	-	carbon source
[Ref.: #23298]	L-serine ChEBI	-	energy source
[Ref.: #23298]	lactose ChEBI	-	builds acid from
[Ref.: #23298]	maltose ChEBI	-	builds acid from
[Ref.: #23298]	melezitose ChEBI	-	builds acid from
[Ref.: #23298]	melibiose ChEBI	-	builds acid from
[Ref.: #23298]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23298]	nitrate ChEBI	+	reduction
[Ref.: #23298]	nitrite ChEBI	-	reduction
[Ref.: #23298]	raffinose ChEBI	-	builds acid from
[Ref.: #23298]	ribitol ChEBI	-	builds acid from
[Ref.: #23298]	starch ChEBI	-	hydrolysis
[Ref.: #23298]	succinate ChEBI	+	assimilation
[Ref.: #23298]	sucrose ChEBI	-	builds acid from
[Ref.: #23298]	tween 20 ChEBI	+	hydrolysis
[Ref.: #23298]	tween 40 ChEBI	+	hydrolysis
[Ref.: #23298]	tween 60 ChEBI	+	hydrolysis
[Ref.: #23298]	tween 80 ChEBI	+	hydrolysis
[Ref.: #23298]	tyrosine ChEBI	-	hydrolysis
[Ref.: #23298]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23298]	lipase (C 14)	-
[Ref.: #23298]	urease	-	3.5.1.5
[Ref.: #23298]	valine arylamidase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6256]	Sample type/isolated from	sea water of tidal flat
[Ref.: #6256]	Geographic location (country and/or sea, region)	Daepo Beach of Yellow Sea
[Ref.: #6256]	Country	Republic of Korea
[Ref.: #6256]	Country ISO 3 Code	KOR
[Ref.: #6256]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY517632 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	3127
Soil Samples	149
Animal Samples	133
Plant Samples	29
Total Samples	3438

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6256]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23298]	Marinobacter flavimaris strain SW-145 16S ribosomal RNA gene, partial sequence	AY517632	1495	GenBank	262076 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter flavimaris KCTC 12185	GCA_003363485	contig	GenBank	262076 tax ID	*
[Ref.: #66792]	Marinobacter flavimaris strain KCTC 12185	262076.4	wgs	PATRIC	262076 tax ID	*

[Ref.: #23298]	GC-content	58.00 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	58 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #6256]

Culture collection no.

DSM 16070, JCM 12323, CGMCC 1.8487, KCTC 12185

[Ref.: #20218]

Associated Passport(s) in StrainInfo

381444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates.	Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJS	Int J Syst Evol Microbiol	10.1099/ijs.0.63447-0	2006	*
Phylogeny	Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea.	Yoon JH, Yeo SH, Kim IG, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63151-0	2004	*

References

#6256

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16070

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23298

Jung-Hoon Yoon, Soo-Hwan Yeo, In-Gi Kim, Tae-Kwang Oh: Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. IJSEM 54: 1799 - 1803 2004 ( DOI 10.1099/ijs.0.63151-0 , PubMed 15388746 )

#37266 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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