Marinobacter flavimaris (DSM 16070, SW145, KCTC 12185)

Name: Marinobacter flavimaris (DSM 16070, SW145, KCTC 12185)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 481

Type strain

Strain Designation SW145

Culture col. no. DSM 16070 SW145 KCTC 12185 CGMCC 1.8487 JCM 12323 1 more

NCBI tax ID(s) 262076

Special Collections DSMZ JCM KCTC Literature strains CIP

History <- J.-H. Yoon; SW145 J.-H. Yoon SW-145. CIP <- 2005, KCTC <- J. H. Yoon, Korea: strain SW145

Links

Marinobacter flavimaris SW145 is an anaerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from sea water of tidal flat.

Gram-negative motile rod-shaped colony-forming anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 134296

DSM 16070,KCTC 12185,JCM 12323,CIP 108615,LMG 23834

@ref 20215

Last LPSN update 2026-02-09 11:17:52

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter flavimaris

Full scientific name Marinobacter flavimaris Yoon et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23298	negative	1.5-3.0 µm	0.6-0.9 µm	rod-shaped	monotrichous, polar
119378	negative			rod-shaped
125438						90.864
125438	negative					98.494
125439	negative					99.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23298	1-2 mm	cream	circular	3 days	MA

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6256	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23298	Marine agar (MA)
37266	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119378	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6256	positive	growth	30	mesophilic
23298	positive	growth	4	psychrophilic
23298	positive	maximum	45	thermophilic
23298	positive	optimum	37	mesophilic
37266	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
119378	positive	growth	5-41

Culture pH

@ref	Ability	Type	PH
23298	positive	optimum	7.0-8.0
23298	positive	growth	5.5
23298		growth	5.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23298	anaerobe
119378	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
23298
125439		99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration	Halophily level
23298	NaCl	positive	optimum	2-6 %
23298	NaCl	positive	growth	20 %
23298	NaCl		growth	>21 %
23298					slightly halophilic
23298	NaCl		growth	0 %
119378	NaCl	positive	growth	2-10 %
119378	NaCl		growth	0 %

Observation

67770

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23298	35391 ChEBI	aspartate	-	assimilation
23298		casein	-	hydrolysis
23298	17057 ChEBI	cellobiose	-	builds acid from
23298	15824 ChEBI	D-fructose	+	assimilation
23298	15824 ChEBI	D-fructose	+	builds acid from
23298	12936 ChEBI	D-galactose	-	builds acid from
23298	8391 ChEBI	D-gluconate	+	assimilation
23298	17634 ChEBI	D-glucose	-	assimilation
23298	17634 ChEBI	D-glucose	-	builds acid from
23298	16899 ChEBI	D-mannitol	-	assimilation
23298	16899 ChEBI	D-mannitol	-	builds acid from
23298	16024 ChEBI	D-mannose	-	builds acid from
23298	16988 ChEBI	D-ribose	-	builds acid from
23298	17924 ChEBI	D-sorbitol	-	builds acid from
23298	16551 ChEBI	D-trehalose	-	builds acid from
23298	65327 ChEBI	D-xylose	-	builds acid from
23298	16449 ChEBI	dl-alanine	-	assimilation
23298	4853 ChEBI	esculin	-	hydrolysis
119378	4853 ChEBI	esculin	-	hydrolysis
23298	5291 ChEBI	gelatin	-	hydrolysis
23298	17754 ChEBI	glycerol	-	carbon source
23298	17754 ChEBI	glycerol	-	energy source
23298	45296 ChEBI	hexadecane	-	carbon source
23298	45296 ChEBI	hexadecane	-	energy source
23298	17368 ChEBI	hypoxanthine	-	hydrolysis
23298	30849 ChEBI	L-arabinose	-	builds acid from
23298	16467 ChEBI	L-arginine	-	assimilation
23298	29985 ChEBI	L-glutamate	-	assimilation
23298	62345 ChEBI	L-rhamnose	-	builds acid from
23298	17115 ChEBI	L-serine	-	carbon source
23298	17115 ChEBI	L-serine	-	energy source
23298	17716 ChEBI	lactose	-	builds acid from
23298	17306 ChEBI	maltose	-	builds acid from
23298	6731 ChEBI	melezitose	-	builds acid from
23298	28053 ChEBI	melibiose	-	builds acid from
23298	17268 ChEBI	myo-inositol	-	builds acid from
23298	17632 ChEBI	nitrate	+	reduction
119378	17632 ChEBI	nitrate	-	builds gas from
119378	17632 ChEBI	nitrate	+	reduction
119378	17632 ChEBI	nitrate	-	respiration
23298	16301 ChEBI	nitrite	-	reduction
119378	16301 ChEBI	nitrite	-	builds gas from
119378	16301 ChEBI	nitrite	-	reduction
23298	16634 ChEBI	raffinose	-	builds acid from
23298	15963 ChEBI	ribitol	-	builds acid from
23298	28017 ChEBI	starch	-	hydrolysis
23298	30031 ChEBI	succinate	+	assimilation
23298	17992 ChEBI	sucrose	-	builds acid from
23298	53424 ChEBI	tween 20	+	hydrolysis
23298	53423 ChEBI	tween 40	+	hydrolysis
23298	53425 ChEBI	tween 60	+	hydrolysis
23298	53426 ChEBI	tween 80	+	hydrolysis
23298	18186 ChEBI	tyrosine	-	hydrolysis
23298	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119378	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119378	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119378	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
119378	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119378	caseinase	-	3.4.21.50
119378	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
119378	gamma-glutamyltransferase	+	2.3.2.2
119378	gelatinase	-
119378	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119378	lipase	-
23298	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
119378	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119378	ornithine decarboxylase	-	4.1.1.17
119378	oxidase	+
119378	phenylalanine ammonia-lyase	+	4.3.1.24
119378	protease	-
68382	trypsin	-	3.4.21.4	from API zym
119378	tryptophan deaminase	-
119378	tween esterase	+
23298	urease	-	3.5.1.5
119378	urease	-	3.5.1.5
23298	valine arylamidase	-
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119378	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6256	sea water of tidal flat	Daepo Beach of Yellow Sea	Republic of Korea	KOR	Asia
67770	Seawater of the Yellow Sea		Republic of Korea	KOR	Asia
119378	Environment, Sea water of tidal flat	Yellow Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY517632 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	3127
Soil Samples	149
Animal Samples	133
Plant Samples	29
Total Samples	3438

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6256	1	Risk group (German classification) According to TRBA 466
119378	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM336348v1 assembly for Marinobacter flavimaris KCTC 12185	contig	GCA_003363485	262076.4	8069064229	262076	71.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23298	Marinobacter flavimaris strain SW-145 16S ribosomal RNA gene, partial sequence	AY517632	1495		262076

GC content

@ref	GC-content (mol%)	Method
23298	58.00	high performance liquid chromatography (HPLC)
67770	58	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter flavimaris KCTC 12185
NCBI: GCA_003363485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	79.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	54.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter flavimaris strain KCTC 12185
PATRIC: 262076.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	yes
125438	anaerobic	anaerobicⓘ	no	95.41	no
125438	spore-forming	spore-formingⓘ	no	85.83	yes
125438	aerobic	aerobicⓘ	yes	85.31	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	90.86	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates.	Green DH, Bowman JP, Smith EA, Gutierrez T, Bolch CJS	Int J Syst Evol Microbiol	10.1099/ijs.0.63447-0	2006
Phylogeny	Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea.	Yoon JH, Yeo SH, Kim IG, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63151-0	2004

References

#6256	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16070
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23298	Jung-Hoon Yoon, Soo-Hwan Yeo, In-Gi Kim, Tae-Kwang Oh: Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. IJSEM 54: 1799 - 1803 2004 ( DOI 10.1099/ijs.0.63151-0 , PubMed 15388746 )
#37266	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119378	Collection of Institut Pasteur ; Curators of the CIP; CIP 108615
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacter flavimaris (DSM 16070, SW145, KCTC 12185)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003363485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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