Name: Marinobacter bryozoorum 114-50-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 480

Type strain:

Species: Marinobacter bryozoorum

Strain Designation: 114-50-11

Culture col. no.: DSM 15401, KMM 3840

Strain history: <- L. A. Romanenko; 114-50-11

NCBI tax ID(s): 256324 (species)

SI-ID 127681

DSM 15401, KCTC 12479

Section

Marinobacter bryozoorum 114-50-11 is an aerobe, heterotroph, mesophilic bacterium that was isolated from sponge.

Gram-negative
motile
rod-shaped
aerobe
heterotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter bryozoorum**
	Full Scientific Name (LPSN)	Marinobacter bryozoorum Romanenko et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #23297]	Gram stain	negative

[Ref.: #23297]	Cell length	1.0-1.3 µm

[Ref.: #23297]	Cell width	0.4-0.5 µm

[Ref.: #23297]	Cell shape	rod-shaped

[Ref.: #23297]	Motility	yes

[Ref.: #23297]	Colony size	2-3 mm
[Ref.: #23297]	Colony color	whitish, translucent
[Ref.: #23297]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5896]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Marine agar (MA)

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #5896]		growth	28 °C
[Ref.: #23297]		growth	7-42 °C
[Ref.: #23297]	no	growth	43 °C

[Ref.: #5896]	Temperature range	mesophilic
[Ref.: #23297]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23297]

Oxygen tolerance

aerobe

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Nutrition type

heterotroph

	Salt	Tested relation		Salt conc.
[Ref.: #23297]	NaCl		growth	1-18	%
[Ref.: #23297]	NaCl	no	growth	18.5	%
[Ref.: #23297]	NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23297]	acetate ChEBI	-	assimilation
[Ref.: #23297]	adipate ChEBI	+	assimilation
[Ref.: #23297]	alpha-lactose ChEBI	-	assimilation
[Ref.: #23297]	arabinose ChEBI	-	builds acid from
[Ref.: #23297]	butyrate ChEBI	-	assimilation
[Ref.: #23297]	cellobiose ChEBI	-	assimilation
[Ref.: #23297]	cellobiose ChEBI	+	assimilation
[Ref.: #23297]	citrate ChEBI	-	assimilation
[Ref.: #23297]	D-arabitol ChEBI	-	assimilation
[Ref.: #23297]	D-fructose ChEBI	-	assimilation
[Ref.: #23297]	D-galactose ChEBI	-	assimilation
[Ref.: #23297]	D-gluconate ChEBI	-	assimilation
[Ref.: #23297]	D-glucose ChEBI	-	assimilation
[Ref.: #23297]	D-mannitol ChEBI	-	assimilation
[Ref.: #23297]	D-mannose ChEBI	-	assimilation
[Ref.: #23297]	D-mannose ChEBI	+	assimilation
[Ref.: #23297]	D-sorbitol ChEBI	-	assimilation
[Ref.: #23297]	D-trehalose ChEBI	-	assimilation
[Ref.: #23297]	decanoate ChEBI	-	assimilation
[Ref.: #23297]	erythritol ChEBI	-	assimilation
[Ref.: #23297]	esculin ChEBI	-	hydrolysis
[Ref.: #23297]	galactose ChEBI	-	builds acid from
[Ref.: #23297]	gelatin ChEBI	-	hydrolysis
[Ref.: #23297]	gentiobiose ChEBI	-	assimilation
[Ref.: #23297]	glucose ChEBI	-	builds acid from
[Ref.: #23297]	glycerol ChEBI	-	builds acid from
[Ref.: #23297]	L-alanine ChEBI	+	assimilation
[Ref.: #23297]	L-arabinose ChEBI	-	assimilation
[Ref.: #23297]	L-fucose ChEBI	-	assimilation
[Ref.: #23297]	L-glutamate ChEBI	-	assimilation
[Ref.: #23297]	L-leucine ChEBI	-	assimilation
[Ref.: #23297]	L-malate ChEBI	-	assimilation
[Ref.: #23297]	L-proline ChEBI	-	assimilation
[Ref.: #23297]	L-rhamnose ChEBI	-	assimilation
[Ref.: #23297]	L-serine ChEBI	+	assimilation
[Ref.: #23297]	lactate ChEBI	-	assimilation
[Ref.: #23297]	lactose ChEBI	-	builds acid from
[Ref.: #23297]	lactulose ChEBI	-	assimilation
[Ref.: #23297]	malate ChEBI	-	assimilation
[Ref.: #23297]	maltose ChEBI	-	assimilation
[Ref.: #23297]	maltose ChEBI	-	builds acid from
[Ref.: #23297]	mannitol ChEBI	-	builds acid from
[Ref.: #23297]	melibiose ChEBI	-	assimilation
[Ref.: #23297]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #23297]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #23297]	myo-inositol ChEBI	-	assimilation
[Ref.: #23297]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #23297]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #23297]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #23297]	nitrate ChEBI	-	reduction
[Ref.: #23297]	phenylacetate ChEBI	-	assimilation
[Ref.: #23297]	psicose ChEBI	-	assimilation
[Ref.: #23297]	raffinose ChEBI	-	assimilation
[Ref.: #23297]	rhamnose ChEBI	-	builds acid from
[Ref.: #23297]	ribitol ChEBI	-	assimilation
[Ref.: #23297]	sucrose ChEBI	-	assimilation
[Ref.: #23297]	sucrose ChEBI	-	builds acid from
[Ref.: #23297]	sucrose ChEBI	+	assimilation
[Ref.: #23297]	turanose ChEBI	-	assimilation
[Ref.: #23297]	tween 40 ChEBI	+	assimilation
[Ref.: #23297]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23297]	urea ChEBI	-	hydrolysis
[Ref.: #23297]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23297]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #23297]	acid phosphatase	+/-	3.1.3.2
[Ref.: #23297]	amylase	-
[Ref.: #23297]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23297]	caseinase	-	3.4.21.50
[Ref.: #23297]	catalase	+	1.11.1.6
[Ref.: #23297]	chitinase	-	3.2.1.14
[Ref.: #23297]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23297]	esterase (C 4)	-
[Ref.: #23297]	esterase lipase (C 8)	+/-
[Ref.: #23297]	leucine arylamidase	+	3.4.11.1
[Ref.: #23297]	urease	-	3.5.1.5
[Ref.: #23297]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5896]	Sample type/isolated from	sponge
[Ref.: #5896]	Geographic location (country and/or sea, region)	Bering Sea
[Ref.: #5896]	Country	Russia
[Ref.: #5896]	Country ISO 3 Code	RUS
[Ref.: #5896]	Continent	Europe

[Ref.: #23297]	Sample type/isolated from	Bryozoa specimen
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ609271 (>99% sequence identity) for Marinobacter bryozoorum from Microbeatlas

Aquatic Samples	30
Soil Samples	1
Animal Samples
Plant Samples	1
Total Samples	32

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5896]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5896]	Marinobacter bryozoanae 16S rRNA gene, type strain 50-11T	AJ609271	1507	ENA	256324 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter bryozoorum DSM 15401	GCA_023156245	scaffold	GenBank	256324 tax ID	*

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GC-content

59.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter bryozoorum DSM 15401 NCBI: GCA_023156245.1
[Ref.: #69480]	flagellated	yes	85.193	no
[Ref.: #69480]	gram-positive	no	98.192	yes
[Ref.: #69480]	anaerobic	no	96.823	yes
[Ref.: #69480]	aerobic	yes	86.628	yes
[Ref.: #69480]	halophile	yes	79.008	no
[Ref.: #69480]	spore-forming	no	95.569	no
[Ref.: #69480]	motile	yes	90.418	yes
[Ref.: #69480]	glucose-ferment	no	88.433	no
[Ref.: #69480]	thermophile	no	98.917	no
[Ref.: #69480]	glucose-util	no	59.627	yes

Availability in culture collections External links

[Ref.: #5896]

Culture collection no.

DSM 15401, KMM 3840

[Ref.: #70159]

SI-ID 127681

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea.	Gao W, Cui Z, Li Q, Xu G, Jia X, Zheng L	Antonie Van Leeuwenhoek	10.1007/s10482-012-9830-z	2012	*
Phylogeny	Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain.	Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.007518-0	2009	*
Phylogeny	Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment.	Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.63258-0	2005	*

References

#5896

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15401

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23297

Lyudmila A. Romanenko, Peter Schumann, Manfred Rohde, Natalia V. Zhukova, Valery V. Mikhailov, Erko Stackebrandt: Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. IJSEM 55: 143 - 148 2005 ( DOI 10.1099/ijs.0.63258-0 , PubMed 15653867 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70159

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127681.1 )

* These data were automatically processed and therefore are not curated

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Marinobacter bryozoorum DSM 15401

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