Paraglaciecola mesophila (DSM 15026, CIP 108360, KMM 241)

Name: Paraglaciecola mesophila (DSM 15026, CIP 108360, KMM 241)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 452

Type strain

Culture col. no. DSM 15026 CIP 108360 KMM 241 LMG 22017

NCBI tax ID(s) 1128912 197222

Special Collections DSMZ CIP

History DSMZ <- E. Stackebrandt <- L. A. Romanenko CIP <- 2004, DSMZ <- L. A. Romanenko, Russian Academy Sciences, Vladivostok, Russia

Links

Paraglaciecola mesophila DSM 15026 is a Gram-negative, motile, rod-shaped bacterium that was isolated from liquor of ascidian Halocynthia aurantium.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88313

DSM 15026,LMG 22017,CIP 108360

@ref 20215

Last LPSN update 2026-05-29 08:25:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Paraglaciecola

Species Paraglaciecola mesophila

Full scientific name Paraglaciecola mesophila (Romanenko et al. 2003) Shivaji and Reddy 2014

Synonyms (1)

Glaciecola mesophila

BacDive ID	Other strains from **Paraglaciecola mesophila** (3)	Type strain
156262	P. mesophila CCUG 60901
156313	P. mesophila CCUG 61126
156316	P. mesophila CCUG 61129

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120910	negative	rod-shaped
125438	negative		99.5
125439	negative		98.215

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5677	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36577	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120910	CIP Medium 13	Medium recipe at CIP
120910	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5677	positive	growth	25
36577	positive	growth	25
120910	positive	growth	5-30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.87

Spore formation

@ref	Spore formation	Confidence
125439		99.881

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120910	NaCl	positive	growth	2-6 %
120910	NaCl		growth	0 %
120910	NaCl		growth	8 %
120910	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120910	4853 ChEBI	esculin	-	hydrolysis
120910	17632 ChEBI	nitrate	-	reduction
120910	16301 ChEBI	nitrite	-	reduction
120910	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120910	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120910	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120910	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
120910	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
120910	caseinase	+	3.4.21.50
120910	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120910	gelatinase	+/-
120910	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120910	lipase	+
68382	lipase (C 14)	-		from API zym
120910	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120910	ornithine decarboxylase	-	4.1.1.17
120910	oxidase	-
120910	protease	+
68382	trypsin	+	3.4.21.4	from API zym
120910	tryptophan deaminase	-
120910	tween esterase	+
120910	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120910	-	+	+	+	-	+	-	-	+	-	+	+	+	+	+	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Tunicata
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
5677	liquor of ascidian Halocynthia aurantium	Halocynthia aurantium	Troista Bay, Peter the Great Bay	Russia	RUS	Asia
120910	Liquor of ascidian Halocynthia aurantium			Russian Federation	RUS	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ488501 (>99% sequence identity) for Paraglaciecola from Microbeatlas

Aquatic Samples	6393
Soil Samples	201
Animal Samples	5596
Plant Samples	60
Total Samples	12250

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5677	1	Risk group (German classification) According to TRBA 466
120910	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM31501v1 assembly for Paraglaciecola mesophila KMM 241	contig	GCA_000315015	1128912.3	2531839187	1128912	61.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5677	Glaciecola sp. KMM 241 partial 16S rRNA gene, strain KMM 241	AJ488501	1499		1128912

GC content

5677

GC-content (mol%)44.6-44.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM31501v1 assembly for Paraglaciecola mesophila KMM 241
NCBI: GCA_000315015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.87	no
125439	gram_stain	BacteriaNetⓘ	negative	98.22	no
125439	motility	BacteriaNetⓘ	yes	62.08	no
125439	spore_formation	BacteriaNetⓘ	no	99.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Glaciecola mesophila KMM 241
PATRIC: 1128912.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	95.76	no
125438	spore-forming	spore-formingⓘ	no	87.65	no
125438	aerobic	aerobicⓘ	yes	69.55	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	85.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Paraglaciecola agarilytica (Yong et al. 2007) Shivaji and Reddy 2014 as a later heterotypic synonym of Paraglaciecola chathamensis (Matsuyama et al. 2006) Shivaji and Reddy 2014 and an emended description of Paraglaciecola chathamensis.	Zou W, Tang T, Ming Y, Liu J, Zheng Y, Li K, Mo P, Li B.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006758	2025
Pathogenicity	Structure and in vitro antiproliferative activity of the acidic capsular polysaccharide from the deep-sea bacterium Psychrobacter submarinus KMM 225^T.	Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV.	Carbohydr Polym	10.1016/j.carbpol.2021.117941	2021
Genetics	Structure of a Sulfated Capsular Polysaccharide from the Marine Bacterium Cobetia marina KMM 1449 and a Genomic Insight into Its Biosynthesis.	Kokoulin MS, Savicheva YV, Filshtein AP, Romanenko LA, Isaeva MP.	Mar Drugs	10.3390/md23010029	2025
Enzymology	Identification and Characterization of a Novel, Cold-Adapted d-Xylobiose- and d-Xylose-Releasing Endo-beta-1,4-xylanase from an Antarctic Soil Bacterium, Duganella sp. PAMC 27433.	Kim DY, Kim J, Lee YM, Lee JS, Shin DH, Ku BH, Son KH, Park HY.	Biomolecules	10.3390/biom11050680	2021
	Xylanase from Marine Filamentous Fungus Pestalotiopsis sp. AN-7 Was Activated with Diluted Salt Solution Like Brackish Water.	Koh S, Mizuno M, Izuoka Y, Fujino N, Hamada-Sato N, Amano Y.	J Appl Glycosci (1999)	10.5458/jag.jag.jag-2020_0011	2021
	Unraveling the Diverse Profile of N-Acyl Homoserine Lactone Signals and Their Role in the Regulation of Biofilm Formation in Porphyra haitanensis-Associated Pseudoalteromonas galatheae.	Aslam M, Pei P, Ye P, Li T, Liang H, Zhang Z, Ke X, Chen W, Du H.	Microorganisms	10.3390/microorganisms11092228	2023
Enzymology	Kinetic and thermodynamic characterization of a novel low-temperature-active xylanase from Arthrobacter sp. GN16 isolated from the feces of Grus nigricollis.	Zhou J, Liu Y, Shen J, Zhang R, Tang X, Li J, Wang Y, Huang Z.	Bioengineered	10.1080/21655979.2014.1004021	2015
	Gene Expression and Molecular Characterization of a Xylanase from Chicken Cecum Metagenome.	Al-Darkazali H, Meevootisom V, Isarangkul D, Wiyakrutta S.	Int J Microbiol	10.1155/2017/4018398	2017
	Emiliania huxleyi-Bacteria Interactions under Increasing CO₂ Concentrations.	Barcelos E Ramos J, Ribeiro SC, Schulz KG, Coelho FJRDC, Oliveira V, Cunha A, Gomes NCM, Brownlee C, Passow U, de Azevedo EB.	Microorganisms	10.3390/microorganisms10122461	2022
	Molecular and Biochemical Characterization of a Bimodular Xylanase From Marinifilaceae Bacterium Strain SPP2.	Han Z, Shang-Guan F, Yang J.	Front Microbiol	10.3389/fmicb.2019.01507	2019
	Data supporting functional diversity of the marine bacterium Cobetia amphilecti KMM 296.	Balabanova L, Nedashkovskaya O, Podvolotskaya A, Slepchenko L, Golotin V, Belik A, Shevchenko L, Son O, Rasskazov V.	Data Brief	10.1016/j.dib.2016.06.034	2016
Pathogenicity	Tolerance to cadmium of free-living and associated with marine animals and eelgrass marine gamma-proteobacteria.	Ivanova EP, Kurilenko VV, Kurilenko AV, Gorshkova NM, Shubin FN, Nicolau DV, Chelomin VP.	Curr Microbiol	10.1007/s00284-001-0017-5	2002
	Structure of a highly acidic O-specific polysaccharide of lipopolysaccharide of Pseudoalteromonas haloplanktis KMM 223 (44-1) containing L-iduronic acid and D-QuiNHb4NHb.	Hanniffy OM, Shashkov AS, Senchenkova SN, Tomshich SV, Komandrova NA, Romanenko LA, Knirel YA, Savage AV.	Carbohydr Res	10.1016/s0008-6215(97)10108-2	1998
Enzymology	Cloning, expression and characteristics of a novel alkalistable and thermostable xylanase encoding gene (Mxyl) retrieved from compost-soil metagenome.	Verma D, Kawarabayasi Y, Miyazaki K, Satyanarayana T.	PLoS One	10.1371/journal.pone.0052459	2013
Genetics	Pangenome Evolution in the Marine Bacterium Alteromonas.	Lopez-Perez M, Rodriguez-Valera F.	Genome Biol Evol	10.1093/gbe/evw098	2016
Enzymology	Insight into glycoside hydrolases for debranched xylan degradation from extremely thermophilic bacterium Caldicellulosiruptor lactoaceticus.	Jia X, Mi S, Wang J, Qiao W, Peng X, Han Y.	PLoS One	10.1371/journal.pone.0106482	2014
Enzymology	A novel bifunctional hybrid with marine bacterium alkaline phosphatase and Far Eastern holothurian mannan-binding lectin activities.	Balabanova L, Golotin V, Kovalchuk S, Bulgakov A, Likhatskaya G, Son O, Rasskazov V.	PLoS One	10.1371/journal.pone.0112729	2014
Phylogeny	A New Group of Modular Xylanases in Glycoside Hydrolase Family 8 from Marine Bacteria.	Chen XL, Zhao F, Yue YS, Zhang XY, Zhang YZ, Li PY	Appl Environ Microbiol	10.1128/AEM.01785-18	2018
Enzymology	Gene cloning, expression and characterization of a novel xylanase from the marine bacterium, Glaciecola mesophila KMM241.	Guo B, Li PY, Yue YS, Zhao HL, Dong S, Song XY, Sun CY, Zhang WX, Chen XL, Zhang XY, Zhou BC, Zhang YZ	Mar Drugs	10.3390/md11041173	2013
Enzymology	Gene cloning, expression and characterization of a new cold-active and salt-tolerant endo-beta-1,4-xylanase from marine Glaciecola mesophila KMM 241.	Guo B, Chen XL, Sun CY, Zhou BC, Zhang YZ	Appl Microbiol Biotechnol	10.1007/s00253-009-2056-y	2009
Phylogeny	Paraglaciecola marina sp. nov., isolated from marine alga (Sargassum natans (L.) Gaillon).	Wang Y, Zhang Y, Liu T, Zhu X, Ma J, Su X, Kang J, Guo C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004132	2020
Phylogeny	Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater.	Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003222	2019
Phylogeny	Phylogenetic analyses of the genus Glaciecola: emended description of the genus Glaciecola, transfer of Glaciecola mesophila, G. agarilytica, G. aquimarina, G. arctica, G. chathamensis, G. polaris and G. psychrophila to the genus Paraglaciecola gen. nov. as Paraglaciecola mesophila comb. nov., P. agarilytica comb. nov., P. aquimarina comb. nov., P. arctica comb. nov., P. chathamensis comb. nov., P. polaris comb. nov. and P. psychrophila comb. nov., and description of Paraglaciecola oceanifecundans sp. nov., isolated from the Southern Ocean.	Shivaji S, Reddy GS	Int J Syst Evol Microbiol	10.1099/ijs.0.065409-0	2014
Phylogeny	Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea.	Yong JJ, Park SJ, Kim HJ, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.64723-0	2007
Phylogeny	Glaciecola mesophila sp. nov., a novel marine agar-digesting bacterium.	Romanenko LA, Zhukova NV, Rohde M, Lysenko AM, Mikhailov VV, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02469-0	2003

References

#5677	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15026
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36577	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120910	Collection of Institut Pasteur ; Curators of the CIP; CIP 108360
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraglaciecola mesophila (DSM 15026, CIP 108360, KMM 241)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000315015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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