Name: Glaciecola pallidula ICO29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 451

Type strain:

Species: Glaciecola pallidula

Strain Designation: ICO29, C12ST5

Culture col. no.: DSM 14239, ACAM 615, CIP 105819

Strain history: CIP <- 1998, ACAM <- 1997, G. Bowman: strain ICO29 <- D. Nichols: strain C12ST5

NCBI tax ID(s): 1121922 (strain), 56807 (species)

SI-ID 46254

ATCC 700757, CIP 105819, LMG 21427, DSM 14239

Section

Glaciecola pallidula ICO29 is a facultative aerobe, slightly halophilic, chemoheterotroph bacterium that was isolated from sea ice.

Gram-negative
motile
rod-shaped
chemoheterotroph
facultative aerobe
psychrophilic
slightly halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Glaciecola*
	Species	**Glaciecola pallidula**
	Full Scientific Name (LPSN)	Glaciecola pallidula Bowman et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #23291]	Gram stain	negative
[Ref.: #121512]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #23291]	Cell shape	rod-shaped
[Ref.: #121512]	Cell shape	rod-shaped

[Ref.: #23291]	Motility	yes
[Ref.: #121512]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.824

[Ref.: #23291]	Cell length	1-5 µm

[Ref.: #23291]	Cell width	0.2-0.4 µm

[Ref.: #23291]	Colony size	3-5 mm
[Ref.: #23291]	Incubation period	14 days

[Ref.: #23291]	Colony color	pale pink
[Ref.: #23291]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5267]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5267]

Culture medium growth

[Ref.: #5267]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5267]

Culture medium composition

expand / minimize

[Ref.: #36585]

Culture medium

Marine agar (MA)

[Ref.: #36585]

Culture medium growth

[Ref.: #36585]

Culture medium composition

expand / minimize

[Ref.: #121512]

Culture medium

CIP Medium 13

[Ref.: #121512]

Culture medium growth

[Ref.: #121512]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5267]		growth	2-15 °C
[Ref.: #23291]		maximum	18-20 °C
[Ref.: #23291]		optimum	10-15 °C
[Ref.: #36585]		growth	10 °C
[Ref.: #121512]	no	growth	37 °C
[Ref.: #121512]	no	growth	30 °C
[Ref.: #121512]	no	growth	25 °C
[Ref.: #121512]	no	growth	22 °C
[Ref.: #121512]		growth	5-18 °C
[Ref.: #121512]	no	growth	41 °C

[Ref.: #5267]	Temperature range	psychrophilic
[Ref.: #23291]	Temperature range	psychrophilic
[Ref.: #36585]	Temperature range	psychrophilic
[Ref.: #121512]	Temperature range	mesophilic
[Ref.: #121512]	Temperature range	psychrophilic
[Ref.: #121512]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23291]

Oxygen tolerance

facultative aerobe

[Ref.: #23291]

Nutrition type

chemoheterotroph

[Ref.: #23291]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

[Ref.: #23291]

Halophily / tolerance level

slightly halophilic

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23291]	acetate ChEBI	+	carbon source
[Ref.: #23291]	acetate ChEBI	+	energy source
[Ref.: #23291]	butyrate ChEBI	+/-	carbon source
[Ref.: #23291]	butyrate ChEBI	+/-	energy source
[Ref.: #23291]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #23291]	D-glucose ChEBI	+/-	builds acid from
[Ref.: #121512]	esculin ChEBI	-	hydrolysis
[Ref.: #23291]	fumarate ChEBI	-	assimilation
[Ref.: #23291]	glycerol ChEBI	+	carbon source
[Ref.: #23291]	glycerol ChEBI	+	energy source
[Ref.: #23291]	glycerol ChEBI	+/-	builds acid from
[Ref.: #23291]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #23291]	glycerol 1-phosphate ChEBI	+	energy source
[Ref.: #23291]	glycogen ChEBI	+	carbon source
[Ref.: #23291]	glycogen ChEBI	+	energy source
[Ref.: #23291]	L-glutamate ChEBI	+	carbon source
[Ref.: #23291]	L-glutamate ChEBI	+	energy source
[Ref.: #23291]	L-proline ChEBI	-	assimilation
[Ref.: #23291]	L-tyrosine ChEBI	-	assimilation
[Ref.: #23291]	lactate ChEBI	+	carbon source
[Ref.: #23291]	lactate ChEBI	+	energy source
[Ref.: #23291]	maltose ChEBI	+/-	builds acid from
[Ref.: #23291]	melibiose ChEBI	+/-	builds acid from
[Ref.: #121512]	nitrate ChEBI	-	reduction
[Ref.: #121512]	nitrite ChEBI	-	reduction
[Ref.: #23291]	oxaloacetate ChEBI	+	carbon source
[Ref.: #23291]	oxaloacetate ChEBI	+	energy source
[Ref.: #23291]	pyruvate ChEBI	+	carbon source
[Ref.: #23291]	pyruvate ChEBI	+	energy source
[Ref.: #23291]	starch ChEBI	+/-	degradation
[Ref.: #23291]	tween 80 ChEBI	+	hydrolysis
[Ref.: #23291]	yeast extract	-	required for growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121512]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #23291]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121512]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23291]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #23291]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121512]	amylase	-
[Ref.: #121512]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121512]	caseinase	-	3.4.21.50
[Ref.: #23291]	catalase	+	1.11.1.6
[Ref.: #121512]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23291]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121512]	gelatinase	-
[Ref.: #121512]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121512]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121512]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121512]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121512]	oxidase	+
[Ref.: #121512]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121512]	tryptophan deaminase	-
[Ref.: #121512]	tween esterase	+
[Ref.: #121512]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121512]	9019	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5267]	Sample type/isolated from	sea ice
[Ref.: #5267]	Geographic location (country and/or sea, region)	Taynaya Bay
[Ref.: #5267]	Continent	Australia and Oceania

[Ref.: #23291]	Sample type/isolated from	Antarctic sea-ice diatom assemblages

[Ref.: #121512]	Sample type/isolated from	Environment, Sea ice
[Ref.: #121512]	Country	Antarctica
[Ref.: #121512]	Country ISO 3 Code	ATA
[Ref.: #121512]	Continent	Antarctica
[Ref.: #121512]	Isolation date	1994
* marker position based on {}

Isolation sources categories

#Host	#Algae	-
#Climate	#Cold	#Polar
#Environmental	#Aquatic	#Ice
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U85854 (>99% sequence identity) for Glaciecola pallidula subclade from Microbeatlas

Aquatic Samples	1533
Soil Samples	26
Animal Samples	74
Plant Samples	2
Total Samples	1635

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5267]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121512]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Glaciecola pallidula ACAM 615T 16S ribosomal RNA gene, partial sequence	U85854	1475	ENA	1121922 tax ID	*
[Ref.: #20218]	Glaciecola pallidula partial 16S rRNA gene, type strain DSM 14239T	FR746107	1522	ENA	1121922 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glaciecola pallidula DSM 14239 = ACAM 615	GCA_000428905	scaffold	GenBank	1121922 tax ID	*
[Ref.: #66792]	Glaciecola pallidula DSM 14239 = ACAM 615	GCA_000315035	contig	GenBank	1121922 tax ID	*
[Ref.: #66792]	Glaciecola pallidula DSM 14239 = ACAM 615	1121922.3	wgs	PATRIC	1121922 tax ID	*
[Ref.: #66792]	Glaciecola pallidula DSM 14239	2531839186	draft	JGI IMG/M	1121922 tax ID	*
[Ref.: #66792]	Glaciecola pallidula DSM 14239	2524023167	draft	JGI IMG/M	1121922 tax ID	*

[Ref.: #23291]

GC-content

40.00 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glaciecola pallidula DSM 14239 = ACAM 615 DSM 14239 NCBI: GCA_000428905.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glaciecola pallidula DSM 14239 = ACAM 615 DSM 14239 NCBI: GCA_000428905.1
[Ref.: #69480]	motile	yes	88.988	yes
[Ref.: #69480]	flagellated	yes	81.605	no
[Ref.: #69480]	gram-positive	no	98.888	yes
[Ref.: #69480]	anaerobic	no	98.367	yes
[Ref.: #69480]	aerobic	yes	79.225	yes
[Ref.: #69480]	halophile	yes	65.963	no
[Ref.: #69480]	spore-forming	no	96.1	yes
[Ref.: #69480]	glucose-util	yes	81.368	no
[Ref.: #69480]	thermophile	no	99.756	no
[Ref.: #69480]	glucose-ferment	no	86.94	no

Availability in culture collections External links

[Ref.: #5267]

Culture collection no.

DSM 14239, ACAM 615, CIP 105819

[Ref.: #70130]

SI-ID 46254

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater.	Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003222	2019	*
Phylogeny	Glaciecola nitratireducens sp. nov., isolated from seawater.	Baik KS, Park YD, Seong CN, Kim EM, Bae KS, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.64330-0	2006	*

References

#5267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14239

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23291

JOHN P. BOWMAN, SHAREE A. McCAMMON, JANELLE L. BROWN, TOM A. McMEEKIN: Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. IJSEM 48: 1213 - 1222 1998 ( DOI 10.1099/00207713-48-4-1213 )

#36585 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70130

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46254.1 )

#121512 Collection of Institut Pasteur ; Curators of the CIP; CIP 105819
* These data were automatically processed and therefore are not curated

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Glaciecola pallidula DSM 14239 = ACAM 615 DSM 14239

Glaciecola pallidula DSM 14239 = ACAM 615 DSM 14239

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