Name: Alteromonas genovensis DSM 23844
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 450

Type strain:

Species: Alteromonas genovensis

Culture col. no.: DSM 23844, CCUG 55340, LMG 24078

Strain history: <- CCUG <- I. Vandecandelaere, LMG

NCBI tax ID(s): 471225 (species)

SI-ID 307691

LMG 24078, CCUG 55340, DSM 23844

Section

Alteromonas genovensis DSM 23844 is an aerobe, moderately halophilic, heterotroph bacterium that forms circular colonies and was isolated from marine electroactive biofilm.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
heterotroph
mesophilic
moderately halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas genovensis**
	Full Scientific Name (LPSN)	Alteromonas genovensis Vandecandelaere et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #23290]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #23290]	Cell length	1.8 µm

[Ref.: #23290]	Cell width	0.9 µm

[Ref.: #23290]	Cell shape	rod-shaped

[Ref.: #23290]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.28

[Ref.: #23290]	Flagellum arrangement	monotrichous, polar

[Ref.: #23290]	Colony size	2 mm
[Ref.: #23290]	Colony color	beige
[Ref.: #23290]	Colony shape	circular
[Ref.: #23290]	Incubation period	2 days
[Ref.: #23290]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17399]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17399]

Culture medium growth

[Ref.: #17399]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17399]

Culture medium composition

expand / minimize

[Ref.: #23290]

Culture medium

Marine agar (MA)

[Ref.: #23290]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #17399]		growth	28 °C
[Ref.: #23290]		growth	4-37 °C
[Ref.: #23290]	no	growth	40 °C
[Ref.: #60537]		growth	30 °C

[Ref.: #17399]	Temperature range	mesophilic
[Ref.: #23290]	Temperature range	thermophilic
[Ref.: #60537]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23290]			optimum	7.0-8.0
[Ref.: #23290]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23290]	Oxygen tolerance	aerobe
[Ref.: #60537]	Oxygen tolerance	aerobe

[Ref.: #23290]

Nutrition type

heterotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

[Ref.: #23290]

Halophily / tolerance level

moderately halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #23290]	NaCl		growth	2-15	%
[Ref.: #23290]	NaCl	no	growth	1	%
[Ref.: #23290]	NaCl	no	growth	20	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23290]	adipate ChEBI	-	assimilation
[Ref.: #23290]	arabinose ChEBI	-	assimilation
[Ref.: #23290]	casein	+	degradation
[Ref.: #23290]	citrate ChEBI	-	assimilation
[Ref.: #23290]	decanoate ChEBI	-	assimilation
[Ref.: #23290]	dna ChEBI	-	degradation
[Ref.: #23290]	esculin ChEBI	+	degradation
[Ref.: #23290]	gelatin ChEBI	+/-	hydrolysis
[Ref.: #23290]	gluconate ChEBI	-	assimilation
[Ref.: #23290]	glucose ChEBI	-	assimilation
[Ref.: #23290]	glucose ChEBI	-	fermentation
[Ref.: #23290]	malate ChEBI	-	assimilation
[Ref.: #23290]	maltose ChEBI	-	assimilation
[Ref.: #23290]	mannitol ChEBI	-	assimilation
[Ref.: #23290]	mannose ChEBI	-	assimilation
[Ref.: #23290]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #23290]	nitrate ChEBI	-	reduction
[Ref.: #23290]	phenylacetate ChEBI	-	assimilation
[Ref.: #23290]	starch ChEBI	+/-	hydrolysis
[Ref.: #23290]	tween 80 ChEBI	+/-	assimilation
[Ref.: #23290]	tyrosine ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic intermediate	Concentration		Antibiotic resistance	Concentration
[Ref.: #23290]	ampicillin ChEBI							yes	25	µg
[Ref.: #23290]	cefoxitin ChEBI							yes	30	µg
[Ref.: #23290]	erythromycin ChEBI	yes	15	µg
[Ref.: #23290]	gentamicin ChEBI	yes	10	µg
[Ref.: #23290]	kanamycin ChEBI				yes	30	µg

	Metabolite production	Metabolite	Production
[Ref.: #23290]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #23290]	acid phosphatase	+	3.1.3.2
[Ref.: #23290]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23290]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #23290]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23290]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23290]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23290]	beta-galactosidase	+	3.2.1.23
[Ref.: #23290]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23290]	catalase	+	1.11.1.6
[Ref.: #23290]	cystine arylamidase	+	3.4.11.3
[Ref.: #23290]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23290]	esterase (C 4)	+
[Ref.: #23290]	esterase lipase (C 8)	+
[Ref.: #23290]	leucine arylamidase	+	3.4.11.1
[Ref.: #23290]	lipase (C 14)	+/-
[Ref.: #23290]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23290]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23290]	trypsin	+/-	3.4.21.4
[Ref.: #23290]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17399]	Sample type/isolated from	marine electroactive biofilm
[Ref.: #17399]	Geographic location (country and/or sea, region)	Genova
[Ref.: #17399]	Country	Italy
[Ref.: #17399]	Country ISO 3 Code	ITA
[Ref.: #17399]	Continent	Europe

[Ref.: #23290]	Sample type/isolated from	marine electroactive biofilm grown on a stainless steel cathode

[Ref.: #60537]	Sample type/isolated from	Marine electroactive biofilm
[Ref.: #60537]	Sampling date	2004-10-01
[Ref.: #60537]	Geographic location (country and/or sea, region)	Genova
[Ref.: #60537]	Country	Italy
[Ref.: #60537]	Country ISO 3 Code	ITA
[Ref.: #60537]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	#Marine
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM885866 (>99% sequence identity) for Alteromonas genovensis from Microbeatlas

Aquatic Samples	620
Soil Samples	1
Animal Samples	10
Plant Samples	2
Total Samples	633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17399]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17399]	Alteromonas genovensis partial 16S rRNA gene, type strain LMG 24078T	AM885866	1501	ENA	471225 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alteromonas genovensis LMG 24078	GCA_010500895	contig	GenBank	471225 tax ID	*
[Ref.: #66792]	Alteromonas genovensis strain LMG 24078	471225.5	wgs	PATRIC	471225 tax ID	*

[Ref.: #17399]	GC-content	44.5 mol%
[Ref.: #23290]	GC-content	44.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alteromonas genovensis strain LMG 24078 PATRIC: 471225.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alteromonas genovensis strain LMG 24078 PATRIC: 471225.5
[Ref.: #69480]	gram-positive	no	99.089	yes
[Ref.: #69480]	anaerobic	no	98.58	yes
[Ref.: #69480]	halophile	yes	85.699	no
[Ref.: #69480]	spore-forming	no	96.991	no
[Ref.: #69480]	glucose-util	yes	86.521	no
[Ref.: #69480]	aerobic	yes	90.231	yes
[Ref.: #69480]	flagellated	yes	90.088	yes
[Ref.: #69480]	thermophile	no	99.558	no
[Ref.: #69480]	motile	yes	91.526	no
[Ref.: #69480]	glucose-ferment	no	87.871	yes

Availability in culture collections External links

[Ref.: #17399]

Culture collection no.

DSM 23844, CCUG 55340, LMG 24078

[Ref.: #70129]

SI-ID 307691

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alteromonas profundi sp. nov., isolated from the Indian Ocean.	Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004308	2020	*
Phylogeny	Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone.	Chen YG, Xiao HD, Tang SK, Zhang YQ, Borrathybay E, Cui XL, Li WJ, Liu YQ	Antonie Van Leeuwenhoek	10.1007/s10482-009-9341-8	2009	*
Phylogeny	Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (approved lists 1980).	Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Mollica A, Faimali M, De Vos P, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65691-0	2008	*

References

#17399

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23844

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23290

Ilse Vandecandelaere, Olivier Nercessian, Eveline Segaert, Wafa Achouak, Alfonso Mollica, Marco Faimali, Paul De Vos, Peter Vandamme: Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980). IJSEM 58: 2589 - 2596 2008 ( DOI 10.1099/ijs.0.65691-0 , PubMed 18984698 )

#60537 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55340

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70129

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307691.1 )

* These data were automatically processed and therefore are not curated

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Alteromonas genovensis strain LMG 24078

Alteromonas genovensis strain LMG 24078

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