Name: Erwinia typographi Y1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4408

Type strain:

Species: Erwinia typographi

Strain Designation: Y1

Culture col. no.: DSM 22678, LMG 25347

Strain history: <- V. Skrodenyte-Arbaciauskiene, Inst. Ecology, Vilnius Univ., Lithuania; Y1

NCBI tax ID(s): 371042 (species)

SI-ID 362992

LMG 25347, DSM 22678

Other strains from Erwinia typographi

E. typographi Y4, DSM 24222
E. typographi Y7, DSM 24223

Section

Erwinia typographi Y1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from gut of adult bark beetle Ips typographus.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Erwinia*
	Species	**Erwinia typographi**
	Full Scientific Name (LPSN)	Erwinia typographi Skrodenyt?-Arba?iauskien? et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30177]	Gram stain	negative

[Ref.: #30177]	Cell length	02-04 µm

[Ref.: #30177]	Cell width	0.7-0.8 µm

[Ref.: #30177]	Cell shape	rod-shaped

[Ref.: #30177]	Motility	yes

[Ref.: #30177]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16458]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #16458]

Culture medium growth

[Ref.: #16458]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16458]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16458]			growth	28 °C
[Ref.: #30177]			optimum	22-36 °C

[Ref.: #16458]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30177]

Oxygen tolerance

facultative anaerobe

[Ref.: #30177]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30177]	arabinose ChEBI	+	carbon source
[Ref.: #30177]	fructose ChEBI	+	carbon source
[Ref.: #30177]	galactose ChEBI	+	carbon source
[Ref.: #30177]	glucose ChEBI	+	carbon source
[Ref.: #30177]	malonate ChEBI	+	carbon source
[Ref.: #30177]	mannitol ChEBI	+	carbon source
[Ref.: #30177]	mannose ChEBI	+	carbon source
[Ref.: #30177]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30177]	ribose ChEBI	+	carbon source
[Ref.: #30177]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30177]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16458]	Sample type/isolated from	gut of adult bark beetle Ips typographus
[Ref.: #16458]	Host species	Ips typographus
[Ref.: #16458]	Country	Lithuania
[Ref.: #16458]	Country ISO 3 Code	LTU
[Ref.: #16458]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16458]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16458]	Erwinia typographi strain Y1 16S ribosomal RNA gene, partial sequence	GU166291	1406	ENA	371042 tax ID

[Ref.: #16458]	GC-content	49.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30177]	GC-content	49.1 mol%

Availability in culture collections External links

[Ref.: #16458]

Culture collection no.

DSM 22678, LMG 25347

[Ref.: #73899]

SI-ID 362992

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Erwinia typographi sp. nov., isolated from bark beetle (Ips typographus) gut.	Skrodenyte-Arbaciauskiene V, Radziute S, Stunzenas V, Buda V	Int J Syst Evol Microbiol	10.1099/ijs.0.030304-0	2011	*

References

#16458

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22678

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30177

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26526 (see below)

#73899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362992.1 )

#26526

IJSEM 942 2012 ( DOI 10.1099/ijs.0.030304-0 , PubMed 21669921 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Erwinia typographi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF