Name: Enterobacter mori R18-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4384

Type strain:

Species: Enterobacter mori

Strain Designation: R18-2

Culture col. no.: DSM 26271, CGMCC 1.10322, LMG 25706

Strain history: <- LMG <- Zhejiang Univ., Hangzhou, China

NCBI tax ID(s): 980518 (strain), 539813 (species)

SI-ID 369642

LMG 25706, CGMCC 1.10322, CCUG 73596

Special Collections

Other strains from Enterobacter mori

Section

Enterobacter mori R18-2 is an anaerobe, spore-forming, Gram-variable plant pathogen that was isolated from roots of diseased white mulberry plant Morus alba L..

Gram-variable
rod-shaped
spore-forming
anaerobe
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Enterobacter*
	Species	**Enterobacter mori**
	Full Scientific Name (LPSN)	Enterobacter mori Zhu et al. 2011

Synonym

Enterobacter tabaci

Information on morphological and physiological properties Morphology

[Ref.: #31037]	Gram stain	variable
[Ref.: #69480]	Gram stain	negative Confidence in %99.478

[Ref.: #31037]	Cell length	2.5 µm

[Ref.: #31037]	Cell width	0.8 µm

[Ref.: #31037]	Cell shape	rod-shaped

Multimedia content

[Ref.: #18181]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18181]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #18181]

Culture medium growth

[Ref.: #18181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18181]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18181]	growth	28 °C
[Ref.: #31037]	growth	50-70 °C
[Ref.: #31037]	optimum	65 °C

	pH	Kind of pH		pH
[Ref.: #31037]			optimum	7.5
[Ref.: #31037]			growth	5.7-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31037]

Oxygen tolerance

anaerobe

[Ref.: #31037]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #31037]	fructose ChEBI	+	carbon source
[Ref.: #31037]	galactose ChEBI	+	carbon source
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #31037]	glucose ChEBI	+	carbon source
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #31037]	mannose ChEBI	+	carbon source
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #31037]	pyruvate ChEBI	+	carbon source
[Ref.: #31037]	raffinose ChEBI	+	carbon source
[Ref.: #31037]	ribose ChEBI	+	carbon source
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #31037]	sucrose ChEBI	+	carbon source
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #31037]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18181]	17728	+	+	-	+	+	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18181]	Sample type/isolated from	roots of diseased white mulberry plant Morus alba L.
[Ref.: #18181]	Host species	Morus alba
[Ref.: #18181]	Geographic location (country and/or sea, region)	Zhejiang province, Hangzhou, Tonglu
[Ref.: #18181]	Country	China
[Ref.: #18181]	Country ISO 3 Code	CHN
[Ref.: #18181]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	-	-
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU721605 (>99% sequence identity) for Enterobacterales from Microbeatlas

Aquatic Samples	888
Soil Samples	575
Animal Samples	11838
Plant Samples	920
Total Samples	14221

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18181]	Pathogenicity (plant)	yes
[Ref.: #18181]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18181]	Enterobacter mori strain R18-2 16S ribosomal RNA gene, partial sequence	EU721605	1285	GenBank ENA	980518 tax ID
[Ref.: #124043]	Enterobacter mori LMG 25706 16S ribosomal RNA gene, partial sequence.	OP818078	1405	GenBank ENA	980518 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enterobacter mori LMG 25706	GCA_000211415	scaffold	GenBank ENA	980518 tax ID	*
[Ref.: #66792]	Enterobacter mori LMG 25706	980518.3	wgs	PATRIC	980518 tax ID	*
[Ref.: #66792]	Enterobacter mori LMG 25706	2547132296	draft	JGI IMG/M	980518 tax ID	*

[Ref.: #31037]

GC-content

54.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Enterobacter mori LMG 25706 LMG 25706 NCBI: GCA_000211415.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enterobacter mori LMG 25706 LMG 25706 NCBI: GCA_000211415.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.478	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	73.327	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	63.697	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.387	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.368	no

Availability in culture collections External links

[Ref.: #18181]

Culture collection no.

DSM 26271, CGMCC 1.10322, LMG 25706

[Ref.: #73875]

SI-ID 369642

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterobacter tabaci sp. nov., a novel member of the genus Enterobacter isolated from a tobacco stem.	Duan YQ, Zhou XK, Di-Yan L, Li QQ, Dang LZ, Zhang YG, Qiu LH, Nimaichand S, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0569-1	2015	*
Phylogeny	Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.064709-0	2014	*
Genetics	Genome sequence of the Enterobacter mori type strain, LMG 25706, a pathogenic bacterium of Morus alba L.	Zhu B, Zhang GQ, Lou MM, Tian WX, Li B, Zhou XP, Wang GF, Liu H, Xie GL, Jin GL	J Bacteriol	10.1128/JB.05200-11	2011	*
Phylogeny	Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L.	Zhu B, Lou MM, Xie GL, Wang GF, Zhou Q, Wang F, Fang Y, Su T, Li B, Duan YP	Int J Syst Evol Microbiol	10.1099/ijs.0.028613-0	2011	*
	First Report of Bacterial Wilt Caused by Enterobacter mori of Strawberry in Beijing, China.	Ji S, Li H, Zhou Y, Li X, Yan J, Zhang W	Plant Dis	10.1094/PDIS-08-22-1895-PDN	2022	*

References

#18181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26271

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31037

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27367 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73875

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369642.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27367

IJSEM 4072 2013 ( DOI 10.1099/ijs.0.050369-0 , PubMed 23749275 )

* These data were automatically processed and therefore are not curated

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Enterobacter mori LMG 25706 LMG 25706

Enterobacter mori LMG 25706 LMG 25706

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