Franconibacter pulveris 601/05 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Fruit powder.
Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Franconibacter |
| Species Franconibacter pulveris |
| Full scientific name Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014 |
| Synonyms (2) |
| BacDive ID | Other strains from Franconibacter pulveris (3) | Type strain |
|---|---|---|
| 4381 | F. pulveris E441, DSM 19145 | |
| 4382 | F. pulveris 1160/04, E908, DSM 19146 | |
| 156820 | F. pulveris CCUG 65679 |
| 32394 | Productionyes |
| @ref: | 7841 |
| multimedia content: | DSM_19144.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_19144.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7841 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 7841 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 7841 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 122051 | CIP Medium 72 | Medium recipe at CIP |
| 32394 | Oxygen tolerancefacultative anaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 32394 | 16808 ChEBI | 2-dehydro-D-gluconate | + | carbon source | |
| 32394 | 58143 ChEBI | 5-dehydro-D-gluconate | + | carbon source | |
| 32394 | 16449 ChEBI | alanine | + | carbon source | |
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 32394 | 22599 ChEBI | arabinose | + | carbon source | |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 32394 | 35391 ChEBI | aspartate | + | carbon source | |
| 32394 | 17057 ChEBI | cellobiose | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 32394 | 28757 ChEBI | fructose | + | carbon source | |
| 32394 | 28260 ChEBI | galactose | + | carbon source | |
| 32394 | 24175 ChEBI | galacturonate | + | carbon source | |
| 32394 | 24265 ChEBI | gluconate | + | carbon source | |
| 32394 | 5417 ChEBI | glucosamine | + | carbon source | |
| 32394 | 17234 ChEBI | glucose | + | carbon source | |
| 32394 | 29987 ChEBI | glutamate | + | carbon source | |
| 32394 | 17754 ChEBI | glycerol | + | carbon source | |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 32394 | 18403 ChEBI | L-arabitol | + | carbon source | |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 32394 | 24996 ChEBI | lactate | + | carbon source | |
| 32394 | 17716 ChEBI | lactose | + | carbon source | |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 32394 | 25115 ChEBI | malate | + | carbon source | |
| 32394 | 17306 ChEBI | maltose | + | carbon source | |
| 32394 | 29864 ChEBI | mannitol | + | carbon source | |
| 32394 | 37684 ChEBI | mannose | + | carbon source | |
| 32394 | 28053 ChEBI | melibiose | + | carbon source | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 32394 | 506227 ChEBI | N-acetylglucosamine | + | carbon source | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 32394 | 26271 ChEBI | proline | + | carbon source | |
| 32394 | 26490 ChEBI | quinate | + | carbon source | |
| 32394 | 16634 ChEBI | raffinose | + | carbon source | |
| 32394 | 26546 ChEBI | rhamnose | + | carbon source | |
| 32394 | 33942 ChEBI | ribose | + | carbon source | |
| 32394 | 17822 ChEBI | serine | + | carbon source | |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 32394 | 17992 ChEBI | sucrose | + | carbon source | |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 32394 | 27082 ChEBI | trehalose | + | carbon source | |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 32394 | 18222 ChEBI | xylose | + | carbon source |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 32394 | catalase | + | 1.11.1.6 | |
| 32394 | cytochrome oxidase | + | 1.9.3.1 | |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | ||
| 66794 | sulfoquinovose degradation | 100 | 3 of 3 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | vitamin B6 metabolism | 100 | 11 of 11 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | quinate degradation | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | ketogluconate metabolism | 100 | 8 of 8 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | glutathione metabolism | 92.86 | 13 of 14 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | metabolism of disaccharids | 90.91 | 10 of 11 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | glutamate and glutamine metabolism | 89.29 | 25 of 28 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | purine metabolism | 82.98 | 78 of 94 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 77.78 | 7 of 9 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | pyrimidine metabolism | 73.33 | 33 of 45 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | degradation of sugar acids | 72 | 18 of 25 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | citric acid cycle | 71.43 | 10 of 14 | ||
| 66794 | non-pathway related | 71.05 | 27 of 38 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | oxidative phosphorylation | 70.33 | 64 of 91 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | degradation of pentoses | 67.86 | 19 of 28 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | cysteine metabolism | 66.67 | 12 of 18 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | lipid metabolism | 64.52 | 20 of 31 | ||
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | arginine metabolism | 62.5 | 15 of 24 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | degradation of hexoses | 61.11 | 11 of 18 | ||
| 66794 | tryptophan metabolism | 60.53 | 23 of 38 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | lysine metabolism | 54.76 | 23 of 42 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 50 | 3 of 6 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | d-xylose degradation | 45.45 | 5 of 11 | ||
| 66794 | phenol degradation | 45 | 9 of 20 | ||
| 66794 | allantoin degradation | 44.44 | 4 of 9 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | polyamine pathway | 43.48 | 10 of 23 | ||
| 66794 | carotenoid biosynthesis | 40.91 | 9 of 22 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | propionate fermentation | 40 | 4 of 10 | ||
| 66794 | myo-inositol biosynthesis | 40 | 4 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 40 | 4 of 10 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | vitamin B12 metabolism | 32.35 | 11 of 34 | ||
| 66794 | phenylpropanoid biosynthesis | 30.77 | 4 of 13 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7841 | + | - | - | - | - | - | - | - | - | - | + | + | + | - | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 7841 | + | - | - | - | - | - | - | - | - | - | - | + | + | - | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM62118v1 assembly for Franconibacter pulveris DSM 19144 | scaffold | 1121863 | 46.69 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7841 | Enterobacter pulveris strain 601/05 16S ribosomal RNA gene, partial sequence | DQ273684 | 1325 | 435910 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 67.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 65.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 95.20 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 88.26 | no |
| 125438 | aerobic | aerobicⓘ | no | 71.24 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 100.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.97 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| The Small RNA NcS25 Regulates Biological Amine-Transporting Outer Membrane Porin BCAL3473 in Burkholderia cenocepacia. | Sass AM, Coenye T. | mSphere | 10.1128/msphere.00083-23 | 2023 | ||
| Pathogenicity | Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate. | Huber-Ruano I, Calvo E, Mayneris-Perxachs J, Rodriguez-Pena MM, Ceperuelo-Mallafre V, Cedo L, Nunez-Roa C, Miro-Blanch J, Arnoriaga-Rodriguez M, Balvay A, Maudet C, Garcia-Roves P, Yanes O, Rabot S, Grimaud GM, De Prisco A, Amoruso A, Fernandez-Real JM, Vendrell J, Fernandez-Veledo S. | Microbiome | 10.1186/s40168-022-01306-y | 2022 | |
| Pathogenicity | Isolation and characterization of bacteria resistant to metallic copper surfaces. | Santo CE, Morais PV, Grass G. | Appl Environ Microbiol | 10.1128/aem.01952-09 | 2010 | |
| Emergence of Cronobacter sakazakii in Cases of Neonatal Sepsis in Upper Egypt: First Report in North Africa. | Elkhawaga AA, Hetta HF, Osman NS, Hosni A, El-Mokhtar MA. | Front Microbiol | 10.3389/fmicb.2020.00215 | 2020 | ||
| Enzymology | Detection of Cronobacter Genus in Powdered Infant Formula by Enzyme-linked Immunosorbent Assay Using Anti-Cronobacter Antibody. | Song X, Shukla S, Lee G, Park S, Kim M | Front Microbiol | 10.3389/fmicb.2016.01124 | 2016 | |
| Phylogeny | Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively. | Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BD | Int J Syst Evol Microbiol | 10.1099/ijs.0.059832-0 | 2014 | |
| Genetics | Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder. | Gopinath GR, Grim CJ, Tall BD, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Stephan R | Genome Announc | 10.1128/genomeA.00991-13 | 2013 | |
| Phylogeny | Natronobacterium texcoconense sp. nov., a haloalkaliphilic archaeon isolated from soil of a former lake. | Ruiz-Romero E, Sanchez-Lopez KB, Coutino-Coutino MLA, Gonzalez-Pozos S, Bello-Lopez JM, Lopez-Ramirez MP, Ramirez-Villanueva DA, Dendooven L. | Int J Syst Evol Microbiol | 10.1099/ijs.0.053629-0 | 2013 | |
| Phylogeny | Limimonas halophila gen. nov., sp. nov., an extremely halophilic bacterium in the family Rhodospirillaceae. | Amoozegar MA, Makhdoumi-Kakhki A, Ramezani M, Nikou MM, Fazeli SAS, Schumann P, Ventosa A. | Int J Syst Evol Microbiol | 10.1099/ijs.0.041236-0 | 2013 | |
| Phylogeny | Franconibacter daqui sp. nov., a facultatively alkaliphilic species isolated from a Daqu sample. | Gao Z, Su C, Yang X, Sun D, Zeng C, Chen M, Hu W, Zhang C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002358 | 2017 | |
| Phylogeny | Enterobacter pulveris sp. nov., isolated from fruit powder, infant formula and an infant formula production environment. | Stephan R, Van Trappen S, Cleenwerck I, Iversen C, Joosten H, De Vos P, Lehner A | Int J Syst Evol Microbiol | 10.1099/ijs.0.65427-0 | 2008 |
| #7841 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19144 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #28618 | IJSEM 237 2008 ( DOI 10.1099/ijs.0.65427-0 , PubMed 18175715 ) |
| #32394 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28618 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #122051 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110811 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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