Lelliottia nimipressuralis (DSM 18955, ATCC 9912, CIP 104980)

Name: Lelliottia nimipressuralis (DSM 18955, ATCC 9912, CIP 104980)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4379

Type strain

Strain Designation E 62

Culture col. no. DSM 18955 ATCC 9912 CIP 104980 LMG 10245 NCPPB 2045 4 more

NCBI tax ID(s) 69220

Special Collections DSMZ CCUG JCM CIP

Links

Lelliottia nimipressuralis E 62 is an aerobe, mesophilic, Gram-negative plant pathogen that was isolated from elm tree.

Gram-negative motile rod-shaped aerobe mesophilic plant pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 11790

LMG 10245,ATCC 9912,ICMP 1577,NCPPB 2045,CCUG 25894,CIP 104980,JCM 6050,DSM 18955

@ref 20215

Last LPSN update 2025-12-16 09:47:48

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Lelliottia

Species Lelliottia nimipressuralis

Full scientific name Lelliottia nimipressuralis (Carter 1945) Brady et al. 2013

Synonyms (3)

Enterobacter nimipressuralis
"Erwinia nimipressuralis"
Erwinia nimipressuralis

BacDive ID	Other strains from **Lelliottia nimipressuralis** (4)	Type strain
134471	L. nimipressuralis CIP 105005
138421	L. nimipressuralis CIP 104979
157166	L. nimipressuralis CCUG 69901
157349	L. nimipressuralis IMI 347424

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121304	negative	rod-shaped
125439	negative		97.6
125438	negative		100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7801	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
32834	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
121304	CIP Medium 3	Medium recipe at CIP
121304	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7801	positive	growth	30	mesophilic
32834	positive	growth	30	mesophilic
48286	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
121304	positive	growth	30-41
121304	negative	growth	5
121304	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
48286	aerobe
121304	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
121304	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
121304	17234 ChEBI	glucose	+	fermentation
121304	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
121304	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
121304	15792 ChEBI	malonate	+	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
121304	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121304	17632 ChEBI	nitrate	+	reduction
121304	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
121304	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
121304	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
121304	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
121304	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	+			from API 20E
121304	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121304	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
121304	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121304	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121304	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121304	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121304	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
121304	oxidase	-
121304	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121304	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
121304	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7801	+	+	-	+	+	-	-	-	-	+	-	+	+	-	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121304	-	+	-	-	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121304	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	-	+	-	-	-	-	-	-	+	-	+/-	+	-	-	-	-	-	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121304	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	+	+	-	+	+	-	+	-	-	+	-	+	-	+	+	-	-	-	-	+	-	-	-	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7801	elm tree	USA	USA	North America
48286	Elm,Ulmus sp.	USA	USA	North America
67770	Elm tree	USA	USA	North America
121304	Elm	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence Z96077 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	49
Soil Samples	67
Animal Samples	316
Plant Samples	45
Total Samples	477

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7801		1	Risk group (German classification) According to TRBA 466
121304		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM411592v1 assembly for Lelliottia nimipressuralis CCUG 25894	contig	GCA_004115925	69220.11	8075365542	69220	66.17
67770	ASM187564v1 assembly for Lelliottia nimipressuralis CIP 104980	contig	GCA_001875645	69220.3	2843132434	69220	50.89

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lelliottia nimipressuralis strain DSMZ 18955 16S ribosomal RNA gene, partial sequence	KF516260	1347	69220
7801	Enterobacter nimipressuralis LMG 10245-T 16S ribosomal RNA	Z96077	1498	69220
7801	Enterobacter nimipressuralis strain LMG 10245 16S ribosomal RNA gene, partial sequence	JF430421	616	69220
124043	Lelliottia nimipressuralis strain ICMP 1577 16S ribosomal RNA gene, partial sequence.	MT759996	1367	69220
124043	Lelliottia nimipressuralis strain ICMP 1577 16S ribosomal RNA gene, partial sequence.	MT758027	1368	69220

GC content

@ref	GC-content (mol%)	Method
67770	58.4-59.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lelliottia nimipressuralis CIP 104980
NCBI: GCA_001875645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.90	no
125439	motility	BacteriaNetⓘ	yes	57.20	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	74.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lelliottia nimipressuralis strain CCUG 25894
PATRIC: 69220.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.63	yes
125438	spore-forming	spore-formingⓘ	no	89.63	no
125438	aerobic	aerobicⓘ	no	63.48	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	80.66	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification and characterization of pathogenicity of Lelliottia nimipressuralis causing soft rot of Codonopsis pilosula (dangshen) roots in China	Zhao X, Tian Y, Yue L, Liu Y, Yan Y, Zhou Q, Wang Y, Zhang Y, Wang R.	Plant Pathol	10.1111/ppa.13606	2022
Genetics	Rare Lelliottia nimipressuralis from a wound infection case report using whole genome sequencing-based bacterial identification.	Choi H, Hwang M, Chatterjee P, Jinadatha C, Navarathna DH.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2021.115538	2021
	Correction for Heinle et al., "Complete Genome Sequence of Lelliottia nimipressuralis Strain SGAir0187, Isolated from Tropical Air Collected in Singapore".	Heinle CE, Junqueira ACM, Uchida A, Purbojati RW, Houghton JNI, Chenard C, Drautz-Moses DI, Wong A, Kolundzija S, Clare ME, Kushwaha KK, Panicker D, Putra A, Gaultier NE, Premkrishnan BNV, Vettath VK, Schuster SC.	Microbiol Resour Announc	10.1128/mra.00739-19	2019
	Complete Genome Sequence of Lelliottia nimipressuralis Type Strain SGAir0187, Isolated from Tropical Air Collected in Singapore.	Heinle CE, Junqueira ACM, Uchida A, Purbojati RW, Houghton JNI, Chenard C, Drautz-Moses DI, Wong A, Kolundzija S, Clare ME, Kushwaha KK, Panicker D, Putra A, Gaultier NE, Premkrishnan BNV, Vettath VK, Schuster SC.	Genome Announc	10.1128/genomea.00231-18	2018
Phylogeny	Endophytic bacteria of desert cactus (Euphorbia trigonas Mill) confer drought tolerance and induce growth promotion in tomato (Solanum lycopersicum L.).	Eke P, Kumar A, Sahu KP, Wakam LN, Sheoran N, Ashajyothi M, Patel A, Fekam FB.	Microbiol Res	10.1016/j.micres.2019.126302	2019
	Isolation and draft genome sequence of Enterobacter asburiae strain i6 amenable to genetic manipulation.	Kato A.	J Genomics	10.7150/jgen.91337	2024
Genetics	Comparative genomics of Vibrio toranzoniae strains.	Barcia-Cruz R, Balboa S, Lema A, Romalde JL.	Int Microbiol	10.1007/s10123-024-00557-z	2025
	A cell-cell communication signal from Enterobacter cloacae interfering with the signaling systems and virulence in Shigella sonnei.	Chen X, Wang M, Zhao Z, Ling X, Peng G, Cui B, Wang Q, Gu B, Deng Y.	Appl Environ Microbiol	10.1128/aem.00510-25	2025
Genetics	Draft Genome Sequence of the Urinary Catheter Isolate Enterobacter ludwigii CEB04 with High Biofilm Forming Capacity.	Shafeeq S, Wang X, Lunsdorf H, Brauner A, Romling U.	Microorganisms	10.3390/microorganisms8040522	2020
	Lelliottia amnigena recovered from the lung of a harbour porpoise, and comparative analyses with Lelliottia spp.	Negus D, Foster G, Hoyles L.	Access Microbiol	10.1099/acmi.0.000694.v3	2023
Phylogeny	Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter.	Brady C, Cleenwerck I, Venter S, Coutinho T, De Vos P.	Syst Appl Microbiol	10.1016/j.syapm.2013.03.005	2013
Phylogeny	A Comparison of Methods for Identifying Enterobacterales Isolates from Fish and Prawns.	Zakrzewski AJ, Zarzecka U, Chajecka-Wierzchowska W, Zadernowska A.	Pathogens	10.3390/pathogens11040410	2022
	Identification of qnrE3 and qnrE4, New Transferable Quinolone Resistance qnrE Family Genes Originating from Enterobacter mori and Enterobacter asburiae, Respectively.	Wang C, Yin M, Zhang X, Guo Q, Wang M.	Antimicrob Agents Chemother	10.1128/aac.00456-21	2021
Phylogeny	Spread of Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates Producing NDM-Type Metallo-beta-Lactamase in Myanmar.	Takei S, Lu YJ, Tohya M, Watanabe S, Misawa S, Tabe Y, Miida T, Mya S, Tin HH, Tada T, Kirikae T.	Microbiol Spectr	10.1128/spectrum.00673-22	2022
	Characterization and identification of a novel chromosomal class C beta-lactamase, LAQ-1, and comparative genomic analysis of a multidrug resistance plasmid in Lelliottia amnigena P13.	Li A, Yan C, Zhang L, Liu S, Feng C, Zhang L, Dong F, Sheng X, Wang L, Zhang Y, Lu J, Xu J, Zheng L, Bao Q, Cheng C, Huang D.	Front Microbiol	10.3389/fmicb.2022.990736	2022
	Unraveling Nitrogen Fixing Potential of Endophytic Diazotrophs of Different Saccharum Species for Sustainable Sugarcane Growth.	Singh RK, Singh P, Sharma A, Guo DJ, Upadhyay SK, Song QQ, Verma KK, Li DP, Malviya MK, Song XP, Yang LT, Li YR.	Int J Mol Sci	10.3390/ijms23116242	2022
Phylogeny	Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing.	McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson BT, Hoffman NG, Salipante SJ.	J Clin Microbiol	10.1128/jcm.00986-19	2019
	Genome Analysis of Enterobacter asburiae and Lelliottia spp. Proliferating in Oligotrophic Drinking Water Reservoirs and Lakes.	Leister C, Hugler M.	Appl Environ Microbiol	10.1128/aem.00471-22	2022
	Two Novel Plant-Growth-Promoting Lelliottia amnigena Isolates from Euphorbia prostrata Aiton Enhance the Overall Productivity of Wheat and Tomato.	Parashar M, Dhar SK, Kaur J, Chauhan A, Tamang J, Singh GB, Lyudmila A, Perveen K, Khan F, Bukhari NA, Mudgal G, Gururani MA.	Plants (Basel)	10.3390/plants12173081	2023
Genetics	Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK.	Matlock W, Lipworth S, Chau KK, AbuOun M, Barker L, Kavanagh J, Andersson M, Oakley S, Morgan M, Crook DW, Read DS, Anjum M, Shaw LP, Stoesser N, REHAB Consortium.	Elife	10.7554/elife.85302	2023
Phylogeny	Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies).	Pot M, Reynaud Y, Couvin D, Ducat C, Ferdinand S, Gravey F, Gruel G, Guerin F, Malpote E, Breurec S, Talarmin A, Guyomard-Rabenirina S.	Front Microbiol	10.3389/fmicb.2021.628058	2021
	Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.	Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo Z	Evol Bioinform Online	10.1177/1176934318754878	2018
	Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov.	Wu W, Feng Y, Zong Z.	mSystems	10.1128/msystems.00527-20	2020
Genetics	Huaxiibacter chinensis gen. nov., sp. nov., recovered from human sputum.	He Y, Wu S, Feng Y, Zong Z.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005484	2022
Phylogeny	Lelliottia wanjuensis sp. nov. Isolated from Korean Lettuce in Wanju, South Korea.	Lee J, Tai E, Jeong S, Kim I, Kim BE, Jeong MI, Oh KK, Biere N, Franz CMAP, Cho GS.	Curr Microbiol	10.1007/s00284-024-03911-6	2024
Phylogeny	Lelliottia aquatilis sp. nov., isolated from drinking water.	Kampfer P, Glaeser SP, Packroff G, Behringer K, Exner M, Chakraborty T, Schmithausen RM, Doijad S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002854	2018
Genetics	Scandinavium goeteborgense gen. nov., sp. nov., a New Member of the Family Enterobacteriaceae Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant.	Marathe NP, Salva-Serra F, Karlsson R, Larsson DGJ, Moore ERB, Svensson-Stadler L, Jakobsson HE.	Front Microbiol	10.3389/fmicb.2019.02511	2019
Phylogeny	Enterobacterhormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes.	Sutton GG, Brinkac LM, Clarke TH, Fouts DE.	F1000Res	10.12688/f1000research.14566.2	2018
Phylogeny	Lelliottia jeotgali sp. nov., isolated from a traditional Korean fermented clam.	Yuk KJ, Kim YT, Huh CS, Lee JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002737	2018
Phylogeny	Lelliottia steviae sp. nov. isolated from Stevia rebaudiana Bertoni.	Lin J, Huang K, Huang JY, Xiong YR, Wei MM, Xiao N, Gao J, Ding XK, Ma ZY, Sang JH, Kong LX, Hong ZY, Li O	Arch Microbiol	10.1007/s00203-022-03033-2	2022

References

#7801	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18955
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32834	; Curators of the CIP;
#48286	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 25894
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121304	Collection of Institut Pasteur ; Curators of the CIP; CIP 104980
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lelliottia nimipressuralis (DSM 18955, ATCC 9912, CIP 104980)

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