Name: Enterobacter cloacae subsp. cloacae DSM 30054
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4373

Type strain:

Species: Enterobacter cloacae subsp. cloacae

Culture col. no.: DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083, NCDC 279-56, JCM 1232, ACM 1975, BCRC 10401, CCUG 28448, CCUG 29301, CCUG 6323, CDC 442-68, CECT 194, HAMBI 1295, HAMBI 96, HUT 8108, IAM 12349, KCTC 2361, LMG 2783, NCIMB 10101, VTT E-84198

Strain history: CIP <- 1960, NCTC, Enterobacter cloacae <- P.R. Edwards, CDC: strain 279-56, Aerobacter cloacae (Cloaca A)

NCBI tax ID(s): 716541 (strain), 550 (species), 336306 (subspecies)

SI-ID 13640

LMG 2783, ATCC 13047, CCUG 6323, CECT 194, DSM 30054, IAM 12349, IFO 13535, JCM 1232, NCIB 10101, NCTC 10005, CCUG 28448, CCUG 29301, CCRC 10401, NCIMB 10101, CCUG 18448, HAMBI 96, HAMBI 1295, VTT E-84198, KCTC 2361, HUT 8108, NBRC 13535, BCRC 10401, CCT 0546, ICMP 7613, NCAIM B.02073, CDBB 963, ACM 1975, ICMP 15661, CIP 60.85, CNCTC 5734

Special Collections

Section

When using BacDive for research please cite our paper

Enterobacter cloacae subsp. cloacae DSM 30054 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that has multiple antibiotic resistances and was isolated from spinal fluid.

antibiotic resistance
Gram-negative
motile
rod-shaped
facultative anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Enterobacter*
	Species	**Enterobacter cloacae subsp. cloacae**
	Full Scientific Name (LPSN)	Enterobacter cloacae subsp. cloacae (Jordan 1890) Hoffmann et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #118316]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.5
[Ref.: #125439]	Gram stain	negative Confidence in %96.9

[Ref.: #118316]	Cell shape	rod-shaped

[Ref.: #118316]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9103]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #9103]

Culture medium growth

[Ref.: #9103]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9103]

Culture medium composition

expand / minimize

[Ref.: #41820]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41820]

Culture medium growth

[Ref.: #41820]

Culture medium composition

expand / minimize

[Ref.: #9103]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9103]

Culture medium growth

[Ref.: #9103]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9103]

Culture medium composition

expand / minimize

[Ref.: #9103]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #9103]

Culture medium growth

[Ref.: #9103]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9103]

Culture medium composition

expand / minimize

[Ref.: #118316]

Culture medium

CIP Medium 72

[Ref.: #118316]

Culture medium growth

[Ref.: #118316]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9103]		growth	30 °C
[Ref.: #41820]		growth	30 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #118316]		growth	10-41 °C
[Ref.: #118316]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118316]

Oxygen tolerance

facultative anaerobe

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Reference

[Ref.: #9103]
Mueller-Hinton Agar
30
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
20
20
resistant0
resistant0
28
30
30
28
24
20
22
6
10-12
resistant0
38-40
40
14
32
18
resistant0
16
22
18
20
26
resistant0
24
32
resistant0
resistant0
resistant0
resistant0
20

[Ref.: #9103]
Mueller-Hinton Agar
30

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
18
20
resistant0
6
28
30
30
26
26-28
22
24
resistant0
12
resistant0
38
32
14
30
16-18
resistant0
16
22
18
18-20
26-28
resistant0
26
34
resistant0
resistant0
resistant0
resistant0
20

[Ref.: #9103]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
20-22
20-22
resistant0
resistant0
30
32
30
26-28
28
22
24
resistant0
12
resistant0
38
40
14
30-32
18
resistant0
16
34
20
20
28
resistant0
28
34
resistant0
resistant0
resistant0
resistant0
22

[Ref.: #9103]
Mueller Hinton
30

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
16-18
20
resistant0
resistant0
26
30
28
24-26
20
20-22
22-24
resistant0
12
resistant0
30-32
32
12
30
14
resistant0
14
22
20
20
26
resistant0
24
30
resistant0
resistant0
resistant0
resistant0
18

Only first 15 entries are displayed. Click here to see all.

[Ref.: #118316]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %93.4

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #118316]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #118316]	glucose ChEBI	+	fermentation
[Ref.: #118316]	glucose ChEBI	+	degradation
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #118316]	lactose ChEBI	+	fermentation
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #118316]	malonate ChEBI	+	assimilation
[Ref.: #118316]	mannitol ChEBI	+	fermentation
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #118316]	nitrate ChEBI	+	reduction
[Ref.: #118316]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #118316]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118316]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #118316]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #118316]	acetoin ChEBI	+
[Ref.: #118316]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118316]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #118316]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118316]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118316]	gelatinase	-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118316]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118316]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #118316]	oxidase	-
[Ref.: #118316]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #118316]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #118316]	urease	-	3.5.1.5
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9103]	19833	+	+	-	+	+	-	-	-	-	+	-	+	+	+/-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9103]	19697	+	+	-	+	+	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9103]	19351	+	+	-	+	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9103]	18299	+	+	-	+	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #118316]	3171	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	-	-	-	-	+	+	+	+	-	+	-	-	-	-	+	-	+	+	-	-	-	-	+	+	+	-	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	+	-	+	-	-	-	+	-	+	+	+	+	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118316]	13008	-	+	+	+	-	+	-	-	+	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9103]	Sample type/isolated from	spinal fluid

[Ref.: #67770]	Sample type/isolated from	Spinal fluid

[Ref.: #118316]	Sample type/isolated from	Human, Spinal fluid
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Cerebrospinal fluid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9103]	Pathogenicity (human)	yes
[Ref.: #9103]	Pathogenicity (animal)	yes
[Ref.: #9103]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #118316]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9103]	Enterobacter cloacae subsp. cloacae partial 16S rRNA gene, type strain DSM 30054T	HE978272	1529	GenBank ENA	336306 tax ID
[Ref.: #20218]	Enterobacter cloacae 16S ribosomal RNA gene, partial sequence	U65720	517	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	KC768786	1369	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	KC768826	699	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae subsp. cloacae gene for 16S rRNA, partial sequence, strain: NBRC 13535	AB680426	1465	GenBank ENA	336306 tax ID	*
[Ref.: #124043]	Enterobacter cloacae strain DSM 30054 16S ribosomal RNA gene, partial sequence.	OP818070	1402	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	FJ971883	795	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae partial 16S rRNA gene, strain ATCC13047T	AJ251469	1511	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae 16S ribosomal RNA, partial 3' end, strain NCTC 10005 T	AJ001236	509	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae 16S ribosomal RNA, partial 5' end, strain NCTC 10005 T	AJ001245	509	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047	FM207092	397	GenBank ENA	550 tax ID	*
[Ref.: #20218]	Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047T	AJ417484	420	GenBank ENA	550 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enterobacter cloacae ATCC 13047	GCA_001299075	scaffold	GenBank ENA	550 tax ID
[Ref.: #67770]	Enterobacter cloacae ATCC 13047	GCA_000755525	scaffold	GenBank ENA	550 tax ID
[Ref.: #67770]	Enterobacter cloacae ATCC 13047	GCA_001997105	scaffold	GenBank ENA	550 tax ID
[Ref.: #67770]	Enterobacter cloacae NCTC10005	GCA_900447605	contig	GenBank ENA	550 tax ID
[Ref.: #66792]	Enterobacter cloacae DSM 30054	GCA_021469225	contig	GenBank ENA	550 tax ID	*
[Ref.: #66792]	Enterobacter cloacae strain DSM 30054	550.2797	complete	PATRIC	550 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterobacter cloacae subsp. cloacae ATCC 13047 ATCC 13047 NCBI: GCA_000025565.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.358	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	64.867	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.773	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	80.753	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterobacter cloacae DSM 30054 NCBI: GCA_013376815
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	93.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	64.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	96.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	83.2

Availability in culture collections External links

[Ref.: #9103]

Culture collection no.

DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083, NCDC 279-56, JCM 1232, ACM 1975, BCRC 10401, CCUG 28448, CCUG 29301, CCUG 6323, CDC 442-68, CECT 194, HAMBI 1295, HAMBI 96, HUT 8108, IAM 12349, KCTC 2361, LMG 2783, NCIMB 10101, VTT E-84198

[Ref.: #73864]

SI-ID 13640

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Pathogenicity	Antimicrobial activity of MccJ25(G12Y) against gram-negative foodborne pathogens in vitro and in food models.	Corbalan N, Quiroga M, Masias E, Peralta D, Barros Velazquez J, Acuna L, Vincent P	Int J Food Microbiol	10.1016/j.ijfoodmicro.2021.109267	2021	*
Pathogenicity	Characterization and proteomic analysis of outer membrane vesicles from a commensal microbe, Enterobacter cloacae.	Bhar S, Edelmann MJ, Jones MK	J Proteomics	10.1016/j.jprot.2020.103994	2020	*
Phylogeny	Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation.	Mustafa A, Ibrahim M, Rasheed MA, Kanwal S, Hussain A, Sami A, Ahmed R, Bo Z	Sci Rep	10.1038/s41598-020-65001-4	2020	*
Pathogenicity	Dominant symbiotic bacteria associated with wild medfly populations reveal a bacteriocin-like killing phenotype: a 'cold-case' study.	Ciolfi S, Marri L	Bull Entomol Res	10.1017/S0007485319000816	2019	*
Metabolism	The Transcriptional Repressor SmvR Is Important for Decreased Chlorhexidine Susceptibility in Enterobacter cloacae Complex.	Guerin F, Gravey F, Plesiat P, Aubourg M, Beyrouthy R, Bonnet R, Cattoir V, Giard JC	Antimicrob Agents Chemother	10.1128/AAC.01845-19	2019	*
Enzymology	Stability and low induction propensity of cefiderocol against chromosomal AmpC beta-lactamases of Pseudomonas aeruginosa and Enterobacter cloacae.	Ito A, Nishikawa T, Ota M, Ito-Horiyama T, Ishibashi N, Sato T, Tsuji M, Yamano Y	J Antimicrob Chemother	10.1093/jac/dky317	2018	*
Pathogenicity	In vitro antimicrobial effects of a novel Pentaherbs concoction for atopic dermatitis.	Hon KL, Ip M, Wong CK, Chan BCL, Leung PC, Leung TF	J Dermatolog Treat	10.1080/09546634.2017.1395804	2017	*
Enzymology	Bactericidal and antioxidant properties of essential oils from the fruits Dennettia tripetala G. Baker.	Okoh SO, Iweriegbor BC, Okoh OO, Nwodo UU, I Okoh A	BMC Complement Altern Med	10.1186/s12906-016-1459-4	2016	*
Metabolism	Feasibility of biohydrogen production from industrial wastes using defined microbial co-culture.	Chen P, Wang Y, Yan L, Wang Y, Li S, Yan X, Wang N, Liang N, Li H	Biol Res	10.1186/s40659-015-0015-x	2015	*
Enzymology	Kinetics of biological decolorisation of anthraquinone based Reactive Blue 19 using an isolated strain of Enterobacter sp.F NCIM 5545.	Holkar CR, Pandit AB, Pinjari DV	Bioresour Technol	10.1016/j.biortech.2014.09.108	2014	*
Enzymology	Development of indole-3-acetic acid-producing Escherichia coli by functional expression of IpdC, AspC, and Iad1.	Romasi EF, Lee J	J Microbiol Biotechnol	10.4014/jmb.1308.08082	2013	*
Phylogeny	Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand.	Khunthongpan S, Bourneow C, H-Kittikun A, Tanasupawat S, Benjakul S, Sumpavapol P	J Gen Appl Microbiol	10.2323/jgam.59.135	2013	*
Phylogeny	Pathogen identification with laser-induced breakdown spectroscopy: the effect of bacterial and biofluid specimen contamination.	Mohaidat QI, Sheikh K, Palchaudhuri S, Rehse SJ	Appl Opt	10.1364/AO.51.000B99	2012	*
Metabolism	EmmdR, a new member of the MATE family of multidrug transporters, extrudes quinolones from Enterobacter cloacae.	He GX, Thorpe C, Walsh D, Crow R, Chen H, Kumar S, Varela MF	Arch Microbiol	10.1007/s00203-011-0738-1	2011	*
Metabolism	SugE, a new member of the SMR family of transporters, contributes to antimicrobial resistance in Enterobacter cloacae.	He GX, Zhang C, Crow RR, Thorpe C, Chen H, Kumar S, Tsuchiya T, Varela MF	Antimicrob Agents Chemother	10.1128/AAC.00094-11	2011	*
Pathogenicity	Novel depsides as potential anti-inflammatory agents with potent inhibitory activity against Escherichia coli-induced interleukin-8 production.	Lv PC, Xiong J, Chen J, Wang KR, Mao WJ, Zhu HL	J Enzyme Inhib Med Chem	10.3109/14756360903357551	2010	*
Genetics	Complete genome sequence of Enterobacter cloacae subsp. cloacae type strain ATCC 13047.	Ren Y, Ren Y, Zhou Z, Guo X, Li Y, Feng L, Wang L	J Bacteriol	10.1128/JB.00067-10	2010	*
Enzymology	High prevalence of mutators among Enterobacter cloacae nosocomial isolates and their association with antimicrobial resistance and repetitive detection.	Matsushima A, Takakura S, Fujihara N, Saito T, Ito I, Iinuma Y, Ichiyama S	Clin Microbiol Infect	10.1111/j.1469-0691.2009.03145.x	2010	*
Phylogeny	Enterobacter oryzae sp. nov., a nitrogen-fixing bacterium isolated from the wild rice species Oryza latifolia.	Peng G, Zhang W, Luo H, Xie H, Lai W, Tan Z	Int J Syst Evol Microbiol	10.1099/ijs.0.65484-0	2009	*
Phylogeny	Simultaneous cellulose degradation and electricity production by Enterobacter cloacae in a microbial fuel cell.	Rezaei F, Xing D, Wagner R, Regan JM, Richard TL, Logan BE	Appl Environ Microbiol	10.1128/AEM.02600-08	2009	*
Pathogenicity	Synthesis, characterization and structure-activity relationship analysis of novel depsides as potential antibacterials.	Lv PC, Xiao ZP, Fang RQ, Li HQ, Zhu HL, Liu CH	Eur J Med Chem	10.1016/j.ejmech.2008.04.019	2008	*
Phylogeny	Involvement of Enterobacter cloacae in the mortality of the fish, Mugil cephalus.	Sekar VT, Santiago TC, Vijayan KK, Alavandi SV, Raj VS, Rajan JJ, Sanjuktha M, Kalaimani N	Lett Appl Microbiol	10.1111/j.1472-765X.2008.02365.x	2008	*
Pathogenicity	[Detection of plasmid-mediated carbapenem-hydrolyzing beta-lactamase KPC-2 in a strain of carbapenem-resistant Enterobacter cloacae].	Cai JC, Zhou HW, Chen GX, Zhang R	Zhonghua Yi Xue Za Zhi		2008	*
Phylogeny	A toxaphene-degrading bacterium related to Enterobacter cloacae, strain D1 isolated from aged contaminated soil in Nicaragua.	Lacayo-Romero M, Quillaguaman J, van Bavel B, Mattiasson B	Syst Appl Microbiol	10.1016/j.syapm.2005.03.015	2005	*
Biotechnology	A simple method for semi-preparative-scale production and recovery of enterocin AS-48 derived from Enterococcus faecalis subsp. liquefaciens A-48-32.	Abriouel H, Valdivia E, Martinez-Bueno M, Maqueda M, Galvez A	J Microbiol Methods	10.1016/s0167-7012(03)00202-1	2003	*
Pathogenicity	Growth inhibition of intestinal bacteria and mutagenicity of 2-, 3-, 4-aminobiphenyls, benzidine, and biphenyl.	Chung KT, Adris P	Toxicol In Vitro	10.1016/s0887-2333(02)00131-5	2003	*
Pathogenicity	Remarkable substituent effects on antimicrobial activities of 1,3-diorganylimidazolidinium salts.	Cetinkaya E, Denizci A, Ozdemir I, Ozturk HT, Karaboz I, Cetinkaya B	J Chemother	10.1179/joc.2002.14.3.241	2002	*
Phylogeny	PCR analyses of tRNA intergenic spacer, 16S-23S internal transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains.	Clementino MM, de Filippis I, Nascimento CR, Branquinho R, Rocha CL, Martins OB	J Clin Microbiol	10.1128/JCM.39.11.3865-3870.2001	2001	*
Phylogeny	[Application of gas chromatography in the identification of Enterobacter cloacae, Enterobacter aerogenes, and Enterobacter agglomerans].	Robles Valderrama E, Ramirez Garcia P, Gonzalez Arreaga ME, Sainz Morales MG, Martinez Rodriguez B, Duran Diaz A, Chavez Ramirez D	Rev Latinoam Microbiol		1999	*
Pathogenicity	Analysis of mutations to gyrA in quinolone-resistant clinical isolates of Enterobacter cloacae.	Dekitsch C, Schein R, Markopulos E, Kuen B, Graninger W, Georgopoulos A	J Med Microbiol	10.1099/00222615-48-1-73	1999	*
Metabolism	Mechanism of inhibition of tannic acid and related compounds on the growth of intestinal bacteria.	Chung KT, Lu Z, Chou MW	Food Chem Toxicol	10.1016/s0278-6915(98)00086-6	1998	*
Pathogenicity	Initial concentration-time profile of gentamicin determines efficacy against Enterobacter cloacae ATCC 13047.	Rayner CR, Ioannides-Demos LL, Brien JA, Liolios LL, Spicer WJ	Antimicrob Agents Chemother	10.1128/AAC.42.6.1370	1998	*
Enzymology	Ascorbate as an induction inhibitor of beta-lactamase in a strain of Enterobacter cloacae.	Shoeb HA, Al-Shora HI, Abdel-Salam T	Lett Appl Microbiol	10.1111/j.1472-765x.1995.tb01091.x	1995	*
Metabolism	Peptidoglycan tripeptide content and cross-linking are altered in Enterobacter cloacae induced to produce AmpC beta-lactamase by glycine and D-amino acids.	Ottolenghi AC, Caparros M, de Pedro MA	J Bacteriol	10.1128/jb.175.5.1537-1542.1993	1993	*
Pathogenicity	An electronmicroscope study of the effect of sulphadiazine and trimethoprim on Enterobacter cloacae.	Richards RM, Xing JZ, Gregory DW, Marshall D	J Med Microbiol	10.1099/00222615-38-1-64	1993	*
Pathogenicity	In vitro phagocytic interaction between Trichomonas vaginalis isolates and bacteria.	Juliano C, Cappuccinelli P, Mattana A	Eur J Clin Microbiol Infect Dis	10.1007/BF01963936	1991	*
Metabolism	Direct evidence of the Entner-Doudoroff pathway operating in the metabolism of D-glucosamine in bacteria.	Iwamoto R, Imanaga Y	J Biochem		1991	*
Biotechnology	[Microbial growth in parenteral nutrition. II. Effects of osmolality].	Vilchez Medina T, Montero Herrero CG, Garcia Curiel A, Lluch Colomer A, Rodriguez Cobacho A, Atienza Fernandez M	Nutr Hosp		1990	*
Enzymology	A comparison of aztreonam and imipenem induction of class I beta-lactamase in Enterobacter cloacae ATCC 13047.	Gatus BJ, Bell SM, Jimenez AS	J Antimicrob Chemother	10.1093/jac/24.6.841	1989	*
Enzymology	[A microbial growth study in parenteral nutrition].	Vilchez Medina T, Montero Herrero CG, Garcia Curiel A, Atienza Fernandez M	Nutr Hosp		1989	*
Pathogenicity	Comparison of glycine enhancement with cefoxitin induction of class 1 beta-lactamase production in Enterobacter cloacae ATCC 13047.	Gatus BJ, Bell SM, Jimenez AS	J Antimicrob Chemother	10.1093/jac/21.2.163	1988	*
	Biologically formed silver nanoparticles and in vitro study of their antimicrobial activities on resistant pathogens.	Ali AR, Anani HAA, Selim FM	Iran J Microbiol	10.18502/ijm.v13i6.8090	2021	*
	Two Type VI Secretion Systems of Enterobacter cloacae Are Required for Bacterial Competition, Cell Adherence, and Intestinal Colonization.	Soria-Bustos J, Ares MA, Gomez-Aldapa CA, Gonzalez-Y-Merchand JA, Giron JA, De la Cruz MA	Front Microbiol	10.3389/fmicb.2020.560488	2020	*
	Landscape of in vivo Fitness-Associated Genes of Enterobacter cloacae Complex.	Guerin F, Lallement C, Goudergues B, Isnard C, Sanguinetti M, Cacaci M, Torelli R, Cattoir V, Giard JC	Front Microbiol	10.3389/fmicb.2020.01609	2020	*
	Proteomics and bioinformatics analysis reveal potential roles of cadmium-binding proteins in cadmium tolerance and accumulation of Enterobacter cloacae.	Chuanboon K, Na Nakorn P, Pannengpetch S, Laengsri V, Nuchnoi P, Isarankura-Na-Ayudhya C, Isarankura-Na-Ayudhya P	PeerJ	10.7717/peerj.6904	2019	*
	Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.	Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo Z	Evol Bioinform Online	10.1177/1176934318754878	2018	*
	Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.	Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL	Genome Announc	10.1128/genomeA.01073-14	2014	*

References

#9103

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30054

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41820 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#73864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13640.1 )

#118316 Collection of Institut Pasteur ; Curators of the CIP; CIP 60.85

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Enterobacter cloacae subsp. cloacae ATCC 13047 ATCC 13047

Enterobacter cloacae DSM 30054

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