Edwardsiella ictaluri GA 77-52 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that was isolated from channel catfish, Ictalurus punctatus.
Gram-negative motile rod-shaped facultative anaerobe mesophilic human pathogen genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Hafniaceae |
| Genus Edwardsiella |
| Species Edwardsiella ictaluri |
| Full scientific name Edwardsiella ictaluri Hawke et al. 1981 |
| @ref | Name | Growth | Composition | |
|---|---|---|---|---|
| 37629 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | ||
| 120041 | CIP Medium 3 | |||
| 120041 | CIP Medium 72 | |||
| 5120 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 5120 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 120041 | Oxygen tolerancefacultative anaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | + | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120041 | 17632 ChEBI | nitrate | + | reduction | |
| 120041 | 17632 ChEBI | nitrate | + | respiration | |
| 120041 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120041 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120041 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 120041 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120041 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 120041 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 120041 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5120 | - | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120041 | not determinedn.d. | +/- | - | - | +/- | + | +/- | - | - | - | + | + | + | + | - | - | + | - | + | - | - | - | + | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | + | - | + |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 5120 | channel catfish, Ictalurus punctatus | Ictalurus punctatus | Georgia | USA | USA | North America | |
| 46881 | Channel catfish | ||||||
| 67770 | Channel catfish (Ictalurus punctatus) | Ictalurus punctatus | |||||
| 120041 | Animal, Catfish, enteric septicemia | Georgia | United States of America | USA | North America |
Global distribution of 16S sequence AB050826 (>99% sequence identity) for Edwardsiella from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | 51726_D01 assembly for Edwardsiella ictaluri NCTC12122 | contig | 67780 | 68.41 | ||||
| 67770 | ASM26478v1 assembly for Edwardsiella ictaluri ATCC 33202 | contig | 1027360 | 46.32 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Edwardsiella ictaluri ATCC 33202 16S ribosomal RNA gene, partial sequence; short 16S-23S intergenic spacer and tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequence | AY706738 | 673 | 1027360 | ||
| 20218 | Edwardsiella ictaluri gene for 16S rRNA, partial sequence | AB050826 | 1466 | 1027360 | ||
| 124043 | Edwardsiella ictaluri gene for 16S rRNA, partial sequence, strain: NBRC 105724. | AB682288 | 1469 | 67780 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative aerobe | 73.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 90.10 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 91.87 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 90.64 | no |
| 125438 | aerobic | aerobicⓘ | no | 77.44 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.82 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 70.50 | no |
| Title | Authors | Journal | Year | |
|---|---|---|---|---|
| Genomic Insights into Edwardsiella ictaluri: Molecular Epidemiology and Antimicrobial Resistance in Striped Catfish (Pangasianodon hypophthalmus) Aquaculture in Vietnam | Erickson V, Dung T, Khoi L, Hounmanou Y, Phu T, Dalsgaard A. | Microorganisms | 2024 | |
| Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087. | Tekedar HC, Blom J, Kalindamar S, Nho S, Karsi A, Lawrence ML. | Microb Genom | 2020 | |
| The Effects of Water Volume and Bacterial Concentration on the Water Filtration Assay Used in Zebrafish Health Surveillance. | Garcia KD, Coda KA, Smith AA, Condren AR, Deng Y, Perkins C, Sanchez LM, Fortman JD. | J Am Assoc Lab Anim Sci | 2021 | |
| Wide-genome selection of lactic acid bacteria harboring genes that promote the elimination of antinutritional factors. | Pham HH, Kim DH, Nguyen TL. | Front Plant Sci | 2023 | |
| Edwardsiellosis caused by Edwardsiella ictaluri in laboratory populations of Zebrafish Danio rerio. | Hawke JP, Kent M, Rogge M, Baumgartner W, Wiles J, Shelley J, Savolainen LC, Wagner R, Murray K, Peterson TS. | J Aquat Anim Health | 2013 | |
| Cross-protection elicited in channel catfish (Ictalurus punctatus Rafinesque) immunized with a low dose of virulent Edwardsiella ictaluri strains | Panangala VS, Shoemaker CA, Klesius PH, Mitra A, Russo R. | Aquac Res | 2009 | |
| The aspartate-semialdehyde dehydrogenase of Edwardsiella ictaluri and its use as balanced-lethal system in fish vaccinology. | Santander J, Xin W, Yang Z, Curtiss R. | PLoS One | 2010 | |
| Mechanisms of intrinsic resistance to antimicrobial peptides of Edwardsiella ictaluri and its influence on fish gut inflammation and virulence. | Santander J, Martin T, Loh A, Pohlenz C, Gatlin DM, Curtiss R. | Microbiology (Reading) | 2013 | |
| Plasmid and serological differences between Edwardsiella ictaluri strains. | Lobb CJ, Ghaffari SH, Hayman JR, Thompson DT. | Appl Environ Microbiol | 1993 | |
| Rapid plasmid analysis for identification of Edwardsiella ictaluri from infected channel catfish (Ictalurus punctatus). | Lobb CJ, Rhoades M. | Appl Environ Microbiol | 1987 | |
| Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms. | Yang M, Lv Y, Xiao J, Wu H, Zheng H, Liu Q, Zhang Y, Wang Q. | PLoS One | 2012 | |
| Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 2014 | |
| Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. | Warsen AE, Krug MJ, LaFrentz S, Stanek DR, Loge FJ, Call DR. | Appl Environ Microbiol | 2004 | |
| Bacterial identification for publication: when is enough enough? | Janda JM, Abbott SL. | J Clin Microbiol | 2002 | |
| Natural antibiotic susceptibilities of Edwardsiella tarda, E. ictaluri, and E. hoshinae. | Stock I, Wiedemann B. | Antimicrob Agents Chemother | 2001 | |
| Isolation and characterization of Edwardsiella tarda from fall chinook salmon (Oncorhynchus tshawytscha). | Amandi A, Hiu SF, Rohovec JS, Fryer JL. | Appl Environ Microbiol | 1982 | |
| Expression during host infection and localization of Yersinia pestis autotransporter proteins. | Lenz JD, Lawrenz MB, Cotter DG, Lane MC, Gonzalez RJ, Palacios M, Miller VL. | J Bacteriol | 2011 | |
| Optimization of Low-Biomass Sample Collection and Quantitative PCR-Based Titration Impact 16S rRNA Microbiome Resolution. | Clokie BGJ, Elsheshtawy A, Albalat A, Nylund A, Beveridge A, Payne CJ, MacKenzie S. | Microbiol Spectr | 2022 | |
| Characterization of External Mucosal Microbiomes of Nile Tilapia and Grey Mullet Co-cultured in Semi-Intensive Pond Systems. | Elsheshtawy A, Clokie BGJ, Albalat A, Beveridge A, Hamza A, Ibrahim A, MacKenzie S. | Front Microbiol | 2021 | |
| Investigating the Effect of an Oxytetracycline Treatment on the Gut Microbiome and Antimicrobial Resistance Gene Dynamics in Nile Tilapia (Oreochromis niloticus). | Payne CJ, Turnbull JF, MacKenzie S, Crumlish M. | Antibiotics (Basel) | 2021 | |
| A new zebrafish model of oro-intestinal pathogen colonization reveals a key role for adhesion in protection by probiotic bacteria. | Rendueles O, Ferrieres L, Fretaud M, Begaud E, Herbomel P, Levraud JP, Ghigo JM. | PLoS Pathog | 2012 | |
| Detection of Quorum Sensing Signal Molecules in Edwardsiella ictaluri Ei-151. | Yang Q, Han Y, Tinh NT, Hien NT, Bossier P | Indian J Microbiol | 2012 | |
| Comparison of Vietnamese and US isolates of Edwardsiella ictaluri. | Rogge ML, Dubytska L, Jung TS, Wiles J, Elkamel AA, Rennhoff A, Oanh DT, Thune RL | Dis Aquat Organ | 2013 | |
| Secreted glyceraldehyde-3-phosphate dehydrogenase as a broad spectrum vaccine candidate against microbial infection in aquaculture. | Li X, Wu H, Zhang M, Liang S, Xiao J, Wang Q, Liu Q, Zhang Y | Lett Appl Microbiol | 2011 | |
| Outer membrane protein profiles of Edwardsiella ictaluri from fish. | Newton JC, Blevins WT, Wilt GR, Wolfe LG | Am J Vet Res | 1990 | |
| Isolation, characterization, and molecular cloning of cryptic plasmids isolated from Edwardsiella ictaluri. | Newton JC, Bird RC, Blevins WT, Wilt GR, Wolfe LG | Am J Vet Res | 1988 |
| #5120 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13697 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #37629 | ; Curators of the CIP; |
| #46881 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18764 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120041 | Collection of Institut Pasteur ; Curators of the CIP; CIP 81.96 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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