Edwardsiella tarda K 349 is a human pathogen that was isolated from human faeces.
human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Hafniaceae |
| Genus Edwardsiella |
| Species Edwardsiella tarda |
| Full scientific name Edwardsiella tarda Ewing and McWhorter 1965 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9101 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9101 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 33522 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 123429 | CIP Medium 72 | Medium recipe at CIP | |||
| 123429 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | - | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68374 | 16899 ChEBI | D-mannitol | - | builds acid from | from API ID32E |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68374 | 30849 ChEBI | L-arabinose | - | builds acid from | from API ID32E |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API ID32E |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API ID32E |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68374 | 27082 ChEBI | trehalose | - | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | - | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68374 | beta-galactosidase | - | 3.2.1.23 | from API ID32E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9101 | - | - | + | + | + | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 9101 | - | - | + | + | - | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44397 | + | - | + | - | - | - | - | - | - | - | - | + | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence JX866952 (>99% sequence identity) for Edwardsiella from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Edwardsiella tarda strain FDAARGOS_1473 | complete | 636 | 98.21 | ||||
| 66792 | Edwardsiella tarda strain FDAARGOS_1473 | complete | 636 | 98.21 | ||||
| 66792 | Edwardsiella tarda strain FDAARGOS_1473 | complete | 636 | 98.21 | ||||
| 67770 | ASM311349v2 assembly for Edwardsiella tarda ATCC 15947 = NBRC 105688 | complete | 667121 | 89.94 | ||||
| 124043 | ASM1993317v1 assembly for Edwardsiella tarda FDAARGOS_1473 | chromosome | 636 | 81.45 | ||||
| 67770 | ASM34150v1 assembly for Edwardsiella tarda ATCC 15947 = NBRC 105688 | contig | 667121 | 66.13 | ||||
| 67770 | 31340_A01 assembly for Edwardsiella tarda NCTC10396 | contig | 636 | 38.99 | ||||
| 67770 | ASM26480v1 assembly for Edwardsiella tarda ATCC 15947 = NBRC 105688 | contig | 667121 | 21.86 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Edwardsiella tarda gene for 16S rRNA, partial sequence, strain:ATCC15947 | AB050827 | 1399 | 667121 | ||
| 20218 | Edwardsiella tarda ATCC 15947 16S ribosomal RNA gene, partial sequence | JX866952 | 1294 | 667121 | ||
| 124043 | Edwardsiella tarda gene for 16S rRNA, partial sequence, strain: NBRC 105688. | AB682263 | 1469 | 636 | ||
| 124043 | Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence. | JX866953 | 1294 | 636 | ||
| 124043 | Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence. | JX866954 | 1294 | 636 | ||
| 124043 | Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence. | JX866955 | 1294 | 636 | ||
| 124043 | Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence. | JX866956 | 1294 | 636 | ||
| 124043 | Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence. | JX866957 | 1294 | 636 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 87.64 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.59 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 82.56 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.49 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 84.89 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 91.62 | no |
| 125438 | aerobic | aerobicⓘ | no | 78.15 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.64 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 69.85 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Common carp (Cyprinus carpio) blood cells are modulated by a parasitic antimicrobial peptide, A-2S and Edwardsiella spp. strains. | Okeleye OI, Majstorovic J, Sudharaka A, Triga A, Mandalakis M, Katharios P, Mladineo I. | Fish Shellfish Immunol | 10.1016/j.fsi.2025.110427 | 2025 | ||
| In Vitro Antimicrobial Activity of Volatile Compounds from the Lichen Pseudevernia furfuracea (L.) Zopf. Against Multidrug-Resistant Bacteria and Fish Pathogens. | Essadki Y, Hilmi A, Cascajosa-Lira A, Girao M, Darrag EM, Martins R, Romane A, El Amrani Zerrifi S, Mugani R, Tazart Z, Redouane EM, Jos A, Camean AM, Vasconcelos V, Campos A, El Khalloufi F, Oudra B, Barakate M, Carvalho MF. | Microorganisms | 10.3390/microorganisms12112336 | 2024 | ||
| Enzymology | First report of Edwardsiellosis in cage-cultured sharpsnout sea bream, Diplodus puntazzo from the Mediterranean. | Katharios P, Kokkari C, Dourala N, Smyrli M. | BMC Vet Res | 10.1186/s12917-015-0482-x | 2015 | |
| Metabolism | The Diverse Piscidin Repertoire of the European Sea Bass (Dicentrarchus labrax): Molecular Characterization and Antimicrobial Activities. | Barroso C, Carvalho P, Carvalho C, Santarem N, Goncalves JFM, Rodrigues PNS, Neves JV. | Int J Mol Sci | 10.3390/ijms21134613 | 2020 | |
| Diverse and abundant phages exploit conjugative plasmids. | Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castano CE, Petherbridge R, Paull JS, Baym M. | Nat Commun | 10.1038/s41467-024-47416-z | 2024 | ||
| Genetics | Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087. | Tekedar HC, Blom J, Kalindamar S, Nho S, Karsi A, Lawrence ML. | Microb Genom | 10.1099/mgen.0.000322 | 2020 | |
| Stimulatory effect of dietary alpha-lipoic acid on growth performance, antioxidant capacity, liver enzymes, immunity and protection of African catfish, Clarias gariepinus (B.), Edwardsiella tarda infection. | Adeshina I, Paray BA, Bhat EA, Ibrahim AD, Tiamiyu LO. | J Anim Physiol Anim Nutr (Berl) | 10.1111/jpn.13876 | 2024 | ||
| Genetics | Complete genome sequence analysis of Edwardsiella tarda SC002 from hatchlings of Siamese crocodile. | Rehman MNU, Dawar FU, Zeng J, Fan L, Feng W, Wang M, Yang N, Guo G, Zheng J. | Front Vet Sci | 10.3389/fvets.2023.1140655 | 2023 | |
| Glutamate-pantothenate pathway promotes antibiotic resistance of Edwardsiella tarda. | Yan BB, Dong XS, Wang JP, Li XY, An L, Wang XR, Zhang LG, Meng QL, Wang C. | Front Microbiol | 10.3389/fmicb.2023.1264602 | 2023 | ||
| Microwave-assisted synthesis, characterization, and in vitro biological evaluation of a novel nanocomposite using molybdenum and [2,2'-bipyridine]-4,4'-dicarboxylic acid. | J Saadh M, N A Jafar N, Altalbawy FMA, Sharma P, Kumar A, Alamir HTA, Ghazy H, Noori Shakir M, Khudhur Mohammed S, Muzammil K, Chasib Gabal B. | RSC Adv | 10.1039/d4ra03758h | 2024 | ||
| Antibacterial activity of a short de novo designed peptide against fish bacterial pathogens. | Bhat RAH, Khangembam VC, Pant V, Tandel RS, Pandey PK, Thakuria D. | Amino Acids | 10.1007/s00726-024-03388-4 | 2024 | ||
| Construction of Genomic Library and Screening of Edwardsiella tarda Immunogenic Proteins for Their Protective Efficacy Against Edwardsiellosis. | Bothammal P, Ganesh M, Vigneshwaran V, Anbarasu K, Ponmurugan K, Al-Dhabi NA, Natarajaseenivasan K. | Front Immunol | 10.3389/fimmu.2021.764662 | 2021 | ||
| Effect of plasma-activated water, used as a disinfectant, on the hatch rate of dormant cysts of the Artemia salina | Yun S, Yoon SY, Hong EJ, Giri SS, Kim SG, Kim SW, Han SJ, Kwon J, Oh WT, Lee SB, Park SC. | Aquaculture | 10.1016/j.aquaculture.2020.735232 | 2020 | ||
| Enzymology | Dietary Supplementation of Bacillus sp. PM8313 with beta-glucan Modulates the Intestinal Microbiota of Red Sea Bream (Pagrus major) to Increase Growth, Immunity, and Disease Resistance. | Jang WJ, Jeon MH, Lee SJ, Park SY, Lee YS, Noh DI, Hur SW, Lee S, Lee BJ, Lee JM, Kim KW, Lee EW, Hasan MT. | Front Immunol | 10.3389/fimmu.2022.960554 | 2022 | |
| Enzymology | First report of the occurrence and whole-genome characterization of Edwardsiella tarda in the false killer whale (Pseudorca crassidens). | Lee K, Kim HK, Park SK, Sohn H, Cho Y, Choi YM, Jeong DG, Kim JH. | J Vet Med Sci | 10.1292/jvms.17-0590 | 2018 | |
| Pathogenicity | Molecular characterization and immune role of TLR7 in Labeo rohita. | Pani S, Ganguly B, Mahapatra S, Dash SP, Das R, Saha A, Samanta M. | Front Immunol | 10.3389/fimmu.2025.1555048 | 2025 | |
| Evaluation of Dietary Probiotic Bacteria and Processed Yeast (GroPro-Aqua) as the Alternative of Antibiotics in Juvenile Olive Flounder Paralichthys olivaceus. | Choi W, Moniruzzaman M, Bae J, Hamidoghli A, Lee S, Choi YH, Min T, Bai SC. | Antibiotics (Basel) | 10.3390/antibiotics11020129 | 2022 | ||
| Antiparasitic and Antibacterial Functionality of Essential Oils: An Alternative Approach for Sustainable Aquaculture. | Dawood MAO, El Basuini MF, Zaineldin AI, Yilmaz S, Hasan MT, Ahmadifar E, El Asely AM, Abdel-Latif HMR, Alagawany M, Abu-Elala NM, Van Doan H, Sewilam H. | Pathogens | 10.3390/pathogens10020185 | 2021 | ||
| Expanding the Spectrum of Diseases and Disease Associations Caused by Edwardsiella tarda and Related Species. | Janda JM, Duman M. | Microorganisms | 10.3390/microorganisms12051031 | 2024 | ||
| Pathogenicity | Characteristics and biological control functions of Bacillus sp. PM8313 as a host-associated probiotic in red sea bream (Pagrus major) aquaculture. | Jang WJ, Lee KB, Jeon MH, Lee SJ, Hur SW, Lee S, Lee BJ, Lee JM, Kim KW, Lee EW. | Anim Nutr | 10.1016/j.aninu.2022.08.011 | 2023 | |
| Chemical composition and antimicrobial activity of Cymbopogon nardus citronella essential oil against systemic bacteria of aquatic animals. | Wei LS, Wee W. | Iran J Microbiol | 2013 | |||
| Biotechnology | Validation of the Peel Plate Staphylococcus Aureus (SA) Test for Enumeration of S. aureus in Selected Foods and Non-Cultured Dairy Products: AOAC Performance Tested MethodSM 082401. | Salter RS, Durbin GW, Li S, Gilbert M, Crowley ES, Deterding A, Bastin B. | J AOAC Int | 10.1093/jaoacint/qsae083 | 2025 | |
| Phylogeny | Comparative analysis of Edwardsiella isolates from fish in the eastern United States identifies two distinct genetic taxa amongst organisms phenotypically classified as E. tarda. | Griffin MJ, Quiniou SM, Cody T, Tabuchi M, Ware C, Cipriano RC, Mauel MJ, Soto E. | Vet Microbiol | 10.1016/j.vetmic.2013.03.027 | 2013 | |
| A zebrafish model of infection-associated acute kidney injury. | Wen X, Cui L, Morrisroe S, Maberry D, Emlet D, Watkins S, Hukriede NA, Kellum JA. | Am J Physiol Renal Physiol | 10.1152/ajprenal.00328.2017 | 2018 | ||
| Isolation and identification of fish pathogen Edwardsiella tarda from mariculture in China | Xiao J, Wang Q, Liu Q, Wang X, Liu H, Zhang Y. | Aquac Res | 10.1111/j.1365-2109.2008.02101.x | 2008 | ||
| Wide-genome selection of lactic acid bacteria harboring genes that promote the elimination of antinutritional factors. | Pham HH, Kim DH, Nguyen TL. | Front Plant Sci | 10.3389/fpls.2023.1145041 | 2023 | ||
| Endogenous Honeybee Gut Microbiota Metabolize the Pesticide Clothianidin. | El Khoury S, Giovenazzo P, Derome N. | Microorganisms | 10.3390/microorganisms10030493 | 2022 | ||
| Lrcasp9 shares similarity in structural motifs with human caspase-9 and is activated following bacterial infection and anti-viral vaccination. | Giri AK, Paichha M, Saha A, Das S, Samanta M. | 3 Biotech | 10.1007/s13205-018-1366-0 | 2018 | ||
| Zein Nanoparticles Impregnated with Eugenol and Garlic Essential Oils for Treating Fish Pathogens. | Luis AIS, Campos EVR, de Oliveira JL, Guilger-Casagrande M, de Lima R, Castanha RF, de Castro VLSS, Fraceto LF. | ACS Omega | 10.1021/acsomega.0c01716 | 2020 | ||
| Pathogenesis of and strategies for preventing Edwardsiella tarda infection in fish. | Park SB, Aoki T, Jung TS. | Vet Res | 10.1186/1297-9716-43-67 | 2012 | ||
| Enzymology | Isolation and characterization of native probiotics for fish farming. | Wanka KM, Damerau T, Costas B, Krueger A, Schulz C, Wuertz S. | BMC Microbiol | 10.1186/s12866-018-1260-2 | 2018 | |
| Phylogeny | Comparative Phenotypic and Genotypic Analysis of Edwardsiella Isolates from Different Hosts and Geographic Origins, with Emphasis on Isolates Formerly Classified as E. tarda, and Evaluation of Diagnostic Methods. | Reichley SR, Ware C, Steadman J, Gaunt PS, Garcia JC, LaFrentz BR, Thachil A, Waldbieser GC, Stine CB, Bujan N, Arias CR, Loch T, Welch TJ, Cipriano RC, Greenway TE, Khoo LH, Wise DJ, Lawrence ML, Griffin MJ. | J Clin Microbiol | 10.1128/jcm.00970-17 | 2017 | |
| Enzymology | Diversity and function of the Antarctic krill microorganisms from Euphausia superba. | Cui X, Zhu G, Liu H, Jiang G, Wang Y, Zhu W. | Sci Rep | 10.1038/srep36496 | 2016 | |
| Metabolism | Differential protein profiling of soil diazotroph Rhodococcus qingshengii S10107 towards low-temperature and nitrogen deficiency. | Suyal DC, Joshi D, Kumar S, Soni R, Goel R. | Sci Rep | 10.1038/s41598-019-56592-8 | 2019 | |
| Metabolism | Intestinal microbiota composition modulates choline bioavailability from diet and accumulation of the proatherogenic metabolite trimethylamine-N-oxide. | Romano KA, Vivas EI, Amador-Noguez D, Rey FE. | mBio | 10.1128/mbio.02481-14 | 2015 | |
| Pathogenicity | Natural antibiotic susceptibilities of Edwardsiella tarda, E. ictaluri, and E. hoshinae. | Stock I, Wiedemann B. | Antimicrob Agents Chemother | 10.1128/aac.45.8.2245-2255.2001 | 2001 | |
| A Novel Assay for Detection of Methicillin-Resistant Staphylococcus aureus Directly From Clinical Samples. | McClure JA, Conly JM, Obasuyi O, Ward L, Ugarte-Torres A, Louie T, Zhang K. | Front Microbiol | 10.3389/fmicb.2020.01295 | 2020 | ||
| Biotechnology | Validation of the One Broth One Plate for Salmonella Method for Detection of Salmonella Spp. in Select Food and Environmental Samples: AOAC Performance Tested MethodSM 102002. | Alles S, Roman B, Le QN, Kurteu M, Elmerhebi E, Potter C, Mozola M, Thompson W, Bastin B, Donofrio R. | J AOAC Int | 10.1093/jaoacint/qsaa149 | 2021 | |
| Pathogenicity | Comparative in vitro activities of selected antimicrobial agents against Edwardsiella tarda. | Reinhardt JF, Fowlston S, Jones J, George WL. | Antimicrob Agents Chemother | 10.1128/aac.27.6.966 | 1985 | |
| Enzymology | Isolation and characterization of Edwardsiella tarda from fall chinook salmon (Oncorhynchus tshawytscha). | Amandi A, Hiu SF, Rohovec JS, Fryer JL. | Appl Environ Microbiol | 10.1128/aem.43.6.1380-1384.1982 | 1982 | |
| Enzymology | BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. | Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB. | BMC Microbiol | 10.1186/1471-2180-12-56 | 2012 | |
| Enzymology | Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 10.1128/aem.00546-14 | 2014 | |
| AOAC-OMA/MicroVal Harmonized Validation of Peel PlateTM EB (Enterobacteriaceae Bacteria), First Action 2018.05. | Salter RS, Durbin GW, Martinez D, Bird P, Bastin B, Crowley E. | J AOAC Int | 10.1093/jaoacint/qsaa067 | 2020 | ||
| Metabolism | Identification of TonB homologs in the family Enterobacteriaceae and evidence for conservation of TonB-dependent energy transduction complexes. | Larsen RA, Myers PS, Skare JT, Seachord CL, Darveau RP, Postle K. | J Bacteriol | 10.1128/jb.178.5.1363-1373.1996 | 1996 | |
| Metabolism | The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 protease class of exported protein and is regulated by a novel mechanism involving Dam and oxyR. | Henderson IR, Owen P. | J Bacteriol | 10.1128/jb.181.7.2132-2141.1999 | 1999 | |
| Phylogeny | Evolution of aromatic amino acid biosynthesis and application to the fine-tuned phylogenetic positioning of enteric bacteria. | Ahmad S, Weisburg WG, Jensen RA. | J Bacteriol | 10.1128/jb.172.2.1051-1061.1990 | 1990 | |
| Enzymology | Evaluation of several selective media for recovery of Aeromonas hydrophila from polluted waters. | Arcos ML, de Vicente A, Morinigo MA, Romero P, Borrego JJ. | Appl Environ Microbiol | 10.1128/aem.54.11.2786-2792.1988 | 1988 | |
| Rapid plasmid analysis for identification of Edwardsiella ictaluri from infected channel catfish (Ictalurus punctatus). | Lobb CJ, Rhoades M. | Appl Environ Microbiol | 10.1128/aem.53.6.1267-1272.1987 | 1987 | ||
| Enzymology | In vivo formation of hybrid aspartate transcarbamoylases from native subunits of divergent members of the family Enterobacteriaceae. | Foltermann KF, Beck DA, Wild JR. | J Bacteriol | 10.1128/jb.167.1.285-290.1986 | 1986 | |
| Phylogeny | Combined PCR-oligonucleotide ligation assay for rapid detection of Salmonella serovars. | Stone GG, Oberst RD, Hays MP, McVey S, Chengappa MM. | J Clin Microbiol | 10.1128/jcm.33.11.2888-2893.1995 | 1995 | |
| Characterization of murine monoclonal antibodies against serogroup B salmonellae and application as serotyping reagents. | Tsang RS, Chan KH, Lau NW, Choi DK, Law DK, Ng MH. | J Clin Microbiol | 10.1128/jcm.29.9.1899-1903.1991 | 1991 | ||
| Biotechnology | Detection of Salmonella spp. in oysters by PCR. | Bej AK, Mahbubani MH, Boyce MJ, Atlas RM. | Appl Environ Microbiol | 10.1128/aem.60.1.368-373.1994 | 1994 | |
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| #9101 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30052 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #33522 | ; Curators of the CIP; |
| #44397 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1638 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68374 | Automatically annotated from API ID32E . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123429 | Collection of Institut Pasteur ; Curators of the CIP; CIP 78.61 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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