Name: Edwardsiella tarda K 349
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4355

Type strain:

Species: Edwardsiella tarda

Strain Designation: K 349, K349, 4-78, 1483-59

Culture col. no.: DSM 30052, NBRC 105688, ATCC 15947, ATCC 23656, CCM 2238, NCTC 10396, CCUG 1638, LMG 2793, CIP 78.61, JCM 1656, NCDC 1483-59, BCRC 10670, CDC 1483-59, CECT 849

Strain history: CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 4-78 <- NCTC <- CDC: strain 1483-59 <- Kentucky State Hlth. Dept., USA: strain K349

NCBI tax ID(s): 667121 (strain), 636 (species)

SI-ID 389406

LMG 2793, ATCC 15947, ATCC 23656, CCM 2238, CCUG 1638, JCM 1656, NCTC 10396, DSM 13696, CCRC 10670, CIP 78.61, CECT 849, ICMP 7611, NCCB 73021, LMD 73.21, BCRC 10670, CCT 1353, KCTC 12267, CNCTC 7384, CGMCC 1.1872, DSM 30052

Special Collections

Other strains from Edwardsiella tarda

Section

When using BacDive for research please cite our paper

Edwardsiella tarda K 349 is a mesophilic, Gram-negative human pathogen that was isolated from human faeces.

Gram-negative
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Hafniaceae*
	Genus	*Edwardsiella*
	Species	**Edwardsiella tarda**
	Full Scientific Name (LPSN)	Edwardsiella tarda Ewing and McWhorter 1965 (Approved Lists 1980)

	Synonym	Edwardsiella anguillimortifera
	Synonym	"Paracolobactrum* anguillimortiferum"*

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %100
[Ref.: #125439]	Gram stain	negative Confidence in %99.4

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9101]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #9101]

Culture medium growth

[Ref.: #9101]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9101]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9101]

Culture medium growth

[Ref.: #9101]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #33522]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #33522]

Culture medium growth

[Ref.: #33522]

Culture medium composition

expand / minimize

[Ref.: #123429]

Culture medium

CIP Medium 72

[Ref.: #123429]

Culture medium growth

[Ref.: #123429]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123429]

Culture medium

CIP Medium 3

[Ref.: #123429]

Culture medium growth

[Ref.: #123429]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9101]	growth	30 °C
[Ref.: #33522]	growth	30 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.616
[Ref.: #125439]	Ability of spore formation	no Confidence in %98.2

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E, API 20E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	lysine ChEBI	+	degradation	* from API ID32E, API 20E
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	ornithine ChEBI	+	degradation	* from API ID32E, API 20E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	+	energy source	* from API ID32E, API 20E
[Ref.: #68374]	urea ChEBI	-	hydrolysis	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68374]	indole ChEBI	yes	* from API ID32E, API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68374]		indole ChEBI		+	* from API ID32E, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	-	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20E
[Ref.: #68374]	beta-galactosidase	-	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	-	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68374]	L-aspartate arylamidase	-	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	+	4.1.1.18	* from API ID32E, API 20E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	+	4.1.1.17	* from API ID32E, API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9101]	18335	-	-	+	+	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9101]	18297	-	-	+	+	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #44397]	690	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9101]	Sample type/isolated from	human faeces

[Ref.: #44397]	Sample type/isolated from	Human feces
[Ref.: #44397]	Geographic location (country and/or sea, region)	Kentucky
[Ref.: #44397]	Country	USA
[Ref.: #44397]	Country ISO 3 Code	USA
[Ref.: #44397]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human feces

[Ref.: #123429]	Sample type/isolated from	Human, Feces
[Ref.: #123429]	Geographic location (country and/or sea, region)	Kentucky
[Ref.: #123429]	Country	United States of America
[Ref.: #123429]	Country ISO 3 Code	USA
[Ref.: #123429]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX866952 (>99% sequence identity) for Edwardsiella from Microbeatlas

Aquatic Samples	2305
Soil Samples	509
Animal Samples	19360
Plant Samples	542
Total Samples	22716

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9101]	Pathogenicity (human)	yes
[Ref.: #9101]	Pathogenicity (animal)	yes
[Ref.: #9101]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123429]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Edwardsiella tarda gene for 16S rRNA, partial sequence, strain: NBRC 105688.	AB682263	1469	GenBank ENA	636 tax ID	*
[Ref.: #124043]	Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence.	JX866953	1294	GenBank ENA	636 tax ID	*
[Ref.: #124043]	Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence.	JX866954	1294	GenBank ENA	636 tax ID	*
[Ref.: #124043]	Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence.	JX866955	1294	GenBank ENA	636 tax ID	*
[Ref.: #20218]	Edwardsiella tarda gene for 16S rRNA, partial sequence, strain:ATCC15947	AB050827	1399	GenBank ENA	667121 tax ID	*
[Ref.: #124043]	Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence.	JX866956	1294	GenBank ENA	636 tax ID	*
[Ref.: #124043]	Edwardsiella ictaluri strain S97-773 16S ribosomal RNA gene, partial sequence.	JX866957	1294	GenBank ENA	636 tax ID	*
[Ref.: #20218]	Edwardsiella tarda ATCC 15947 16S ribosomal RNA gene, partial sequence	JX866952	1294	GenBank ENA	667121 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Edwardsiella tarda ATCC 15947 = NBRC 105688	GCA_000264805	contig	GenBank ENA	667121 tax ID
[Ref.: #67770]	Edwardsiella tarda ATCC 15947 = NBRC 105688	GCA_000341505	contig	GenBank ENA	667121 tax ID
[Ref.: #67770]	Edwardsiella tarda ATCC 15947 = NBRC 105688	GCA_003113495	complete	GenBank ENA	667121 tax ID
[Ref.: #67770]	Edwardsiella tarda NCTC10396	GCA_900447455	contig	GenBank ENA	636 tax ID
[Ref.: #66792]	Edwardsiella tarda strain FDAARGOS_1473	636.48	complete	PATRIC	636 tax ID	*
[Ref.: #66792]	Edwardsiella tarda ATCC 15947	2547132207	draft	JGI IMG/M	667121 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Edwardsiella tarda strain FDAARGOS_1473 strain Not applicable PATRIC: 636.42
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	84.893	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.616	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	78.151	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.643	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	69.85	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Edwardsiella tarda ATCC 15947 = NBRC 105688 NCBI: GCA_003113495
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative aerobe	63.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	89.9
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.2

Availability in culture collections External links

[Ref.: #9101]

Culture collection no.

DSM 30052, NBRC 105688, ATCC 15947, ATCC 23656, CCM 2238, NCTC 10396, CCUG 1638, LMG 2793, CIP 78.61, JCM 1656, NCDC 1483-59, BCRC 10670, CDC 1483-59, CECT 849

[Ref.: #73846]

SI-ID 389406

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Cloning and characterization of two chondroitin sulfate ABC lyases from Edwardsiella tarda LMG2793.	Song G, Sun J, Zhao M, Wang Z, Gong Q, Yu W	Enzyme Microb Technol	10.1016/j.enzmictec.2020.109701	2020	*
Stress	Stable isotope labelling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Edwardsiella tarda ATCC 15947 under prolonged cold stress.	Ma W, Jia J, Huang X, Xie W, Zhang X, Tang J, Lin C, Zhao L, Fang P	Microb Pathog	10.1016/j.micpath.2018.09.006	2018	*
Phylogeny	Phenotypic diversity of Edwardsiella tarda isolated from different origins.	He Y, Xu T, Han Y, Shi X, Zhang XH	Lett Appl Microbiol	10.1111/j.1472-765X.2011.03103.x	2011	*
Enzymology	[Analys of outer membrane protein and drug-resistant of Edwardsiella tarda].	Huang X, Lu C	Wei Sheng Wu Xue Bao		2001	*
Enzymology	Rapid identification of Enterobacteriaceae using a novel 23S rRNA-targeted oligonucleotide probe.	Bohnert J, Hubner B, Botzenhart K	Int J Hyg Environ Health	10.1078/S1438-4639(04)70011-5	2000	*
Pathogenicity	Phenotypic and genotypic analysis of Edwardsiella isolates from Taiwan indicates wide variation with a particular reference to Edwardsiella tarda and Edwardsiella anguillarum.	Rahmawaty A, Chen MY, Byadgi OV, Wang PC, Chen SC	J Fish Dis	10.1111/jfd.13688	2022	*
	Construction and evaluation of a live vaccine against Edwardsiella tarda and Vibrio harveyi: laboratory vs. mock field trial.	Hu YH, Cheng S, Zhang M, Sun L	Vaccine	10.1016/j.vaccine.2011.04.025	2011	*
	Analysis of the vaccine potential of a natural avirulent Edwardsiella tarda isolate.	Cheng S, Hu YH, Zhang M, Sun L	Vaccine	10.1016/j.vaccine.2010.01.023	2010	*

References

#9101

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30052

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33522 ; Curators of the CIP;
#44397 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1638

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73846

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389406.1 )

#123429 Collection of Institut Pasteur ; Curators of the CIP; CIP 78.61

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

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Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Edwardsiella tarda in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Edwardsiella tarda strain FDAARGOS_1473 strain Not applicable

Edwardsiella tarda ATCC 15947 = NBRC 105688

Change proposal

Change proposal