Citrobacter gillenii (DSM 13694, ATCC 51117, CCUG 30796)

Name: Citrobacter gillenii (DSM 13694, ATCC 51117, CCUG 30796)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4336

Type strain

Strain Designation 3-85, 4693-86

Culture col. no. DSM 13694 ATCC 51117 CCUG 30796 CDC 4693-86 CIP 106783 2 more

NCBI tax ID(s) 67828

Special Collections DSMZ CCUG CIP

History <- ATCC <- C. F. Riddle <- P. Grimont; 3-85 CIP <- 2000, CCUG <- 1992, R.E. Weaver, CDC, Atlanta, Georgia, USA: strain 4693-86 <- 1986, P.A.D. Grimont, Institut Pasteur, Paris, France

Links

Citrobacter gillenii 3-85 is an aerobe, Gram-negative, motile bacterium that was isolated from human faeces.

Gram-negative motile oval-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42812

ATCC 51117,DSM 13694,CCUG 30796,CIP 106783,CNCTC 5065

@ref 20215

Last LPSN update 2026-02-09 11:18:42

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Citrobacter

Species Citrobacter gillenii

Full scientific name Citrobacter gillenii Brenner et al. 2000

BacDive ID	Other strains from **Citrobacter gillenii** (3)	Type strain
139071	C. gillenii CIP A245
141539	C. gillenii CCUG 2749
158025	C. gillenii MASE-SM7, DSM 102847

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119617	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5118	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40596	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119617	CIP Medium 72	Medium recipe at CIP
119617	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5118	positive	growth	37
40596	positive	growth	37
50276	positive	growth	37
119617	positive	growth	5-41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
50276	aerobe
119617	facultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
119617	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
119617	17234 ChEBI	glucose	+	fermentation
119617	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
119617	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
119617	15792 ChEBI	malonate	+	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
119617	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
119617	17632 ChEBI	nitrate	+	reduction
119617	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
119617	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119617	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119617	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119617	15688 ChEBI	acetoin	-
119617	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119617	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
119617	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119617	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119617	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119617	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119617	ornithine decarboxylase	-	4.1.1.17
119617	oxidase	-
119617	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
119617	tryptophan deaminase	-
119617	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119617	-	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119617	not determinedn.d.	+	-	+	+	+	+	-	-	-	+	+	+	+	-	+	-	+	+	+	-	-	+	-	+/-	-	+/-	+	+	+	+	-	+	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119617	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	+	+	+	+	+	+	+	-	+	+	+	-	+	+	-	-	-	-	-	-	+	+	+	-	-	+	-	-	+	-	-	-	+	+	-	-	-	-	+	+	-	-	+	+	+	+	+	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	+	-	-	+	+	+	-	-	+	-	-	+	-	+	+	+	+	+	+	+	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5118	human faeces	France	FRA	Europe
50276	Human feces	France	FRA	Europe
119617	Human, Feces	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF025367 (>99% sequence identity) for Citrobacter from Microbeatlas

Aquatic Samples	162
Soil Samples	59
Animal Samples	1658
Plant Samples	212
Total Samples	2091

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5118	2	Risk group (German classification) According to TRBA 466
119617	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Citrobacter sp. 'genomospecies 10' 16S ribosomal RNA gene, partial sequence	AF025367	1527		67828
124043	Citrobacter gillenii strain CIP 106783 16S ribosomal RNA gene, partial sequence.	KM515970	1449		67828

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Gram-Negative Microbiota Derived from Trout Fished in Slovakian Water Sources and Their Relationship to Postbiotics.	Laukova A, Kandricakova A, Scerbova J, Pogany Simonova M, Zitnan R.	Pathogens	10.3390/pathogens14070644	2025
Genetics	CRISPR/Cas9-Mediated Genome Editing of the Komagataella phaffii to Obtain a Phytase-Producer Markerless Strain.	Tkachenko AA, Borshchevskaya LN, Sineoky SP, Gordeeva TL.	Biochemistry (Mosc)	10.1134/s0006297923090134	2023
Phylogeny	APH(3')-Ie, an aminoglycoside-modifying enzyme discovered in a rabbit-derived Citrobacter gillenii isolate.	Lin N, Sha Y, Zhang G, Song C, Zhang Y, Zhao J, Huang D, Lu J, Bao Q, Pan W.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1435123	2024
	Fatal Pneumonia Caused by Beauveria bassiana in a Kemp's Ridley Sea Turtle (Lepidochelys kempii, Garman, 1880) on the Portuguese Coast: Case Report and Review of Beauveria spp. Infections in Reptiles.	Marques GN, Lopes R, Peleteiro MC, Bento JT, Mesquita JR, Dos Santos FA, Delgado L, Coelho AC, Lourenco M, Leal M, Lopes V, Castro AP, Barny R, Guerra J, Urbani N, Nunes A, Santos Y, Gaspar I, Garces A, Neves J.	Microorganisms	10.3390/microorganisms13092092	2025
	Detection and Antimicrobial Resistance of Enterobacteriaceae other than Escherichia Coli in Raccoons from the Madrid Region of Spain.	Orden JA, Martinez-Rodrigo A, Vela AI, Fernandez-Garayzabal JF, Hurtado-Morillas C, Mas A, Dominguez-Bernal G.	J Vet Res	10.2478/jvetres-2022-0058	2022
	The first outbreak of citrobacteriosis caused by Citrobacter gillenii in reared Russian sturgeon (Acipenser gueldenstaedtii) in Turkiye.	Ture M, Cebeci A, Ozcelep T.	Vet Res Forum	10.30466/vrf.2021.137808.3076	2022
	Effect of Essential Oils and Dried Herbs on the Shelf Life of Fresh Goat Lump Cheese.	Kacaniova M, Joanidis P, Lakatosova J, Kunova S, Benesova L, Ikromi K, Akhmedov F, Boboev K, Gulmahmad M, Niyatbekzoda F, Toshkhodjaev N, Bobokalonov F, Kamolov N, Cmikova N.	Foods	10.3390/foods13132016	2024
Enzymology	A novel phytase from Citrobactergillenii: characterization and expression in Pichia pastoris (Komagataella pastoris).	Tkachenko AA, Kalinina AN, Borshchevskaya LN, Sineoky SP, Gordeeva TL.	FEMS Microbiol Lett	10.1093/femsle/fnaa217	2021
	Unique Regulation of Sed-1 beta-Lactamase in Citrobacter sedlakii: Insights on Resistance to Third-Generation Cephalosporin	Watanabe M, Nakano R, Yamamoto K, Nakano A, Suzuki Y, Saito K, Nakashima S, Endo K, Narita K, Yano H.	Antibiotics (Basel)		2025
	Characterization of a Novel Variant of the Quinolone-Resistance Gene qnrB (qnrB89) Carried by a Multi-Drug Resistant Citrobacter gillenii Strain Isolated from Farmed Salmon in Chile.	Concha C, Miranda CD, Rojas R, Godoy FA, Romero J.	Antibiotics (Basel)	10.3390/antibiotics10030236	2021
	Epidemiological Description and Detection of Antimicrobial Resistance in Various Aquatic Sites in Marseille, France.	El-Sawalhi S, Revol O, Chamieh A, Lacoste A, Annessi A, La Scola B, Rolain JM, Pagnier I.	Microbiol Spectr	10.1128/spectrum.01426-22	2023
	Culturomics Profiling of Nasal Cavities of European Wild Rabbits on the Iberian Peninsula: Antimicrobial Resistance and Detection of Microorganisms of Public Health Interest.	Gonzalez-Azcona C, Jimenez-Ruiz S, Santos N, Del Campo-Fernandez I, Rojas-Tigasi K, Alvarez-Gomez T, Maranon-Clemente I, Eguizabal P, Abdullahi IN, Alonso CA, Torres C, Lozano C.	Pathogens	10.3390/pathogens14040317	2025
Enzymology	A comparison of photolytic, photochemical and photocatalytic processes for disinfection of recirculation aquaculture systems (RAS) streams.	Moreno-Andres J, Rueda-Marquez JJ, Homola T, Vielma J, Morinigo MA, Mikola A, Sillanpaa M, Acevedo-Merino A, Nebot E, Levchuk I.	Water Res	10.1016/j.watres.2020.115928	2020
Genetics	Molecular characterization and antimicrobial resistance profile of atypical Citrobacter gillenii and Citrobacter sp. isolated from diseased rainbow trout (Oncorhynchus mykiss).	Duman M, Saticioglu IB, Buyukekiz AG, Balta F, Altun S.	J Glob Antimicrob Resist	10.1016/j.jgar.2017.05.014	2017
	Tracking Microbial Diversity and Hygienic-Sanitary Status during Processing of Farmed Rainbow Trout (Oncorhynchus mykiss).	Serrano Heredia SM, Sanchez-Martin J, Romero Gil V, Arroyo-Lopez FN, Benitez-Cabello A, Carrasco Jimenez E, Valero Diaz A.	Foods	10.3390/foods12203718	2023
	Inter- and intra-species interactions between meat plant environmental bacteria and a non-biofilm-forming Escherichia coli O157:H7 strain in co-culture biofilms.	Visvalingam J, Zhang P, Yang X.	Front Microbiol	10.3389/fmicb.2024.1517732	2024
Genetics	Nationwide molecular epidemiology of carbapenemase-producing Citrobacter spp. in France in 2019 and 2020.	Biez L, Bonnin RA, Emeraud C, Birer A, Jousset AB, Naas T, Dortet L.	mSphere	10.1128/msphere.00366-23	2023
	The Impact of Urban Pollution on Plasmid-Mediated Resistance Acquisition in Enterobacteria from a Tropical River.	Mendoza-Guido B, Barrantes K, Rodriguez C, Rojas-Jimenez K, Arias-Andres M.	Antibiotics (Basel)	10.3390/antibiotics13111089	2024
	Genome analysis of Bifidobacterium adolescentis and investigation of its effects on inflammation and intestinal barrier function.	Li B, Wang H, Wang M, Liang H, Hu T, Yang J, Li S, You X, Xia B, Yuan Y, Zou Y, Miao Y, Sun Y.	Front Microbiol	10.3389/fmicb.2024.1496280	2024
	Effect of quorum quenching bacteria on growth, virulence factors and biofilm formation of Yersinia ruckeri in vitro and an in vivo evaluation of their probiotic effect in rainbow trout.	Torabi Delshad S, Soltanian S, Soltanian S, Sharifiyazdi H, Bossier P.	J Fish Dis	10.1111/jfd.12840	2018
Metabolism	Identification of N-acyl homoserine lactone-degrading bacteria isolated from rainbow trout (Oncorhynchus mykiss).	Torabi Delshad S, Soltanian S, Soltanian S, Sharifiyazdi H, Haghkhah M, Bossier P.	J Appl Microbiol	10.1111/jam.13891	2018
Pathogenicity	In vitro synergy between sodium deoxycholate and furazolidone against enterobacteria.	Le VVH, Olivera C, Spagnuolo J, Davies IG, Rakonjac J.	BMC Microbiol	10.1186/s12866-019-1668-3	2020
Genetics	Characterization of cephalosporin and fluoroquinolone resistant Enterobacterales from Irish farm waste by whole genome sequencing.	Prendergast DM, Slowey R, Burgess CM, Murphy D, Johnston D, Morris D, O' Doherty A, Moriarty J, Gutierrez M.	Front Microbiol	10.3389/fmicb.2023.1118264	2023
	A Surveillance Study of Culturable and Antimicrobial-Resistant Bacteria in Two Urban WWTPs in Northern Spain.	Pino-Hurtado MS, Fernandez-Fernandez R, Campana-Burguet A, Gonzalez-Azcona C, Lozano C, Zarazaga M, Torres C.	Antibiotics (Basel)	10.3390/antibiotics13100955	2024
	Geographic and environmental impacts on gut microbiome in Himalayan langurs (Semnopithecus schistaceus) and Xizang macaques (Macaca mulatta vestita).	Wang X, Li H, Yang Y, Wu Z, Wang Z, Li D, Xia W, Zou S, Liu Y, Wang F.	Front Microbiol	10.3389/fmicb.2024.1452101	2024
	The Role of the Microbiome in Gastroentero-Pancreatic Neuroendocrine Neoplasms (GEP-NENs).	Mohamed A, Asa SL, McCormick T, Al-Shakhshir H, Dasari A, Mauricio R, Salem I, Ocuin LM, Bajor D, Lee RT, Selfridge JE, Kardan A, Lee Z, Avril N, Kopp S, Winter JM, Hardacre JM, Ammori JB, Ghannoum MA.	Curr Issues Mol Biol	10.3390/cimb44050136	2022
	Endogenous Bacteremia Caused by Intestinal Colonization of Carbapenem-Resistant Enterobacteriaceae (CRE) in Immunocompromised Children.	Almasian Tehrani N, Azimi L, Armin S, Soleimani N, Fallah F, Karimi A, Shamsian BS, Nazari S, Alebouyeh M.	Trop Med Infect Dis	10.3390/tropicalmed8080402	2023
Pathogenicity	In vitro synergy of 5-nitrofurans, vancomycin and sodium deoxycholate against Gram-negative pathogens.	Olivera C, Le VVH, Davenport C, Rakonjac J.	J Med Microbiol	10.1099/jmm.0.001304	2021
	Structural and Serological Studies of the O6-Related Antigen of Aeromonas veronii bv. sobria Strain K557 Isolated from Cyprinus carpio on a Polish Fish Farm, which Contains L-perosamine (4-amino-4,6-dideoxy-L-mannose), a Unique Sugar Characteristic for Aeromonas Serogroup O6.	Dworaczek K, Drzewiecka D, Pekala-Safinska A, Turska-Szewczuk A.	Mar Drugs	10.3390/md17070399	2019
Metabolism	Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria.	Tran PQ, Bachand SC, Hotvedt JC, Kieft K, McDaniel EA, McMahon KD, Anantharaman K.	mSystems	10.1128/msystems.00201-23	2023
Phylogeny	Characterization of Microbiological Quality of Whole and Gutted Baltic Herring.	Huotari J, Tsitko I, Honkapaa K, Alakomi HL.	Foods	10.3390/foods11040492	2022
	Molecular analysis of intestinal microbiota of rainbow trout (Oncorhynchus mykiss).	Navarrete P, Magne F, Mardones P, Riveros M, Opazo R, Suau A, Pochart P, Romero J.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2009.00769.x	2010
Biotechnology	Study of the bacterial ecosystem in tropical cooked and peeled shrimps using a polyphasic approach.	Jaffres E, Sohier D, Leroi F, Pilet MF, Prevost H, Joffraud JJ, Dousset X.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2008.05.017	2009
	Occurrence of Transferable Integrons and sul and dfr Genes Among Sulfonamide-and/or Trimethoprim-Resistant Bacteria Isolated From Chilean Salmonid Farms.	Dominguez M, Miranda CD, Fuentes O, de la Fuente M, Godoy FA, Bello-Toledo H, Gonzalez-Rocha G.	Front Microbiol	10.3389/fmicb.2019.00748	2019
Phylogeny	Diversity of endophytic bacteria in medicinally important Nepenthes species.	Bhore SJ, Komathi V, Kandasamy KI.	J Nat Sci Biol Med	10.4103/0976-9668.117022	2013
	Microbial Safety of Smoothie Drinks from Fresh Bars Collected in Slovakia.	Krahulcova M, Micajova B, Olejnikova P, Cverenkarova K, Birosova L.	Foods	10.3390/foods10030551	2021
	Bacterial Morphotypes as Important Trait for Uropathogenic E. coli Diagnostic; a Virulence-Phenotype-Phylogeny Study.	Ballesteros-Monrreal MG, Arenas-Hernandez MMP, Barrios-Villa E, Juarez J, Alvarez-Ainza ML, Taboada P, De la Rosa-Lopez R, Bolado-Martinez E, Valencia D.	Microorganisms	10.3390/microorganisms9112381	2021
	Structures of two O-chain polysaccharides of Citrobacter gillenii O9a,9b lipopolysaccharide. A new homopolymer of 4-amino-4,6-dideoxy-D-mannose (perosamine).	Lipinski T, Zatonsky GV, Kocharova NA, Jaquinod M, Forest E, Shashkov AS, Gamian A, Knirel YA.	Eur J Biochem	10.1046/j.0014-2956.2001.02638.x	2002
	Bats (Mammalia: Chiroptera) in urban-rural interfaces: community structure associated with pathogen screening in São Paulo-the largest metropolitan region in Brazil.	Brito JEC, de Mello BGV, Gaeta NC, Batista JMN, Brito TR, Agostinho WC, Brandao PE, Heinemann MB, Dias RA.	Vet Res Commun	10.1007/s11259-023-10112-2	2023
	Mechanisms Used by Probiotics to Confer Pathogen Resistance to Teleost Fish.	Simon R, Docando F, Nunez-Ortiz N, Tafalla C, Diaz-Rosales P.	Front Immunol	10.3389/fimmu.2021.653025	2021
Biotechnology	Soleris®Enterobacteriaceae for the Detection of Enterobacteriaceae in Select Foods: AOAC Performance Tested MethodSM 121901.	Alles S, Roman B, Betts G, Jordan S, Everis L, Montei C, Biswas P, Mozola M, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa001	2020
	The Porcine Nasal Microbiota with Particular Attention to Livestock-Associated Methicillin-Resistant Staphylococcus aureus in Germany-A Culturomic Approach.	Schlattmann A, von Lutzau K, Kaspar U, Becker K.	Microorganisms	10.3390/microorganisms8040514	2020
Enzymology	Chromosome-encoded narrow-spectrum Ambler class A beta-lactamase GIL-1 from Citrobacter gillenii.	Naas T, Aubert D, Ozcan A, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.01152-06	2007
	Regulation of Class A beta-Lactamase CzoA by CzoR and IscR in Comamonas testosteroni S44.	Zhuang W, Liu H, Li J, Chen L, Wang G.	Front Microbiol	10.3389/fmicb.2017.02573	2017
	The microbial diversity of traditional spontaneously fermented lambic beer.	Spitaels F, Wieme AD, Janssens M, Aerts M, Daniel HM, Van Landschoot A, De Vuyst L, Vandamme P.	PLoS One	10.1371/journal.pone.0095384	2014
	Fecal Indole as a Biomarker of Susceptibility to Cryptosporidium Infection.	Chappell CL, Darkoh C, Shimmin L, Farhana N, Kim DK, Okhuysen PC, Hixson J.	Infect Immun	10.1128/iai.00336-16	2016
	Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers.	Koiv V, Roosaare M, Vedler E, Kivistik PA, Toppi K, Schryer DW, Remm M, Tenson T, Mae A.	Sci Rep	10.1038/srep11606	2015
Enzymology	Insertion sequence ISEcp1B is involved in expression and mobilization of a bla(CTX-M) beta-lactamase gene.	Poirel L, Decousser JW, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.47.9.2938-2945.2003	2003
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Phylogeny	Biochemical identification of Citrobacter species defined by DNA hybridization and description of Citrobacter gillenii sp. nov. (formerly Citrobacter genomospecies 10) and Citrobacter murliniae sp. nov. (formerly Citrobacter genomospecies 11).	Brenner DJ, O'Hara CM, Grimont PA, Janda JM, Falsen E, Aldova E, Ageron E, Schindler J, Abbott SL, Steigerwalt AG.	J Clin Microbiol	10.1128/jcm.37.8.2619-2624.1999	1999

References

#5118	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13694
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40596	; Curators of the CIP;
#50276	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30796
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119617	Collection of Institut Pasteur ; Curators of the CIP; CIP 106783
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Citrobacter gillenii (DSM 13694, ATCC 51117, CCUG 30796)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

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Antibiotic resistance

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Metabolite tests

Enzymes

API zym

API 50CHac

API biotype100

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16S sequences

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