Citrobacter freundii (CCUG 53829, CCM 7187, CIP 103547)

Name: Citrobacter freundii (CCUG 53829, CCM 7187, CIP 103547)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4326

Type strain

Strain Designation LRA 117.03.76

Culture col. no. CCUG 53829 CCM 7187 CIP 103547 DSM 24397 ATCC 43864 5 more

NCBI tax ID(s) 546

Special Collections DSMZ CCUG CIP

History <- LMG; LMG 21265 <- ATCC; ATCC 43864 <- bioMerieux; CIP <- 1992, R. Mercier, bioMérieux, La Balme les Grottes, France: strain LRA 117.03.76 <- Mandrin, Saint Eloi Hosp., Montpellier, France

Links

Citrobacter freundii LRA 117.03.76 is an aerobe, mesophilic, Gram-negative prokaryote of the family Enterobacteriaceae.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 42090

NCTC 13639,ATCC 43864,CIP 103547,LMG 21265,CCM 7187,CCUG 53829,CECT 7464,DSM 24397

@ref 20215

Last LPSN update 2026-02-09 11:18:41

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Citrobacter

Species Citrobacter freundii

Full scientific name Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)

Synonyms (2)

"Bethesda ballerupensis"
"Bacterium freundii"

BacDive ID	Other strains from **Citrobacter freundii** (86)	Type strain
4325	C. freundii DSM 30039, ATCC 8090, IFO 12681, NBRC 12681, ... (type strain)
130908	C. freundii 1024, DSM 24120
4324	C. freundii B080, DSM 15979, NCIMB 12203
4327	C. freundii B, strain B, DSM 25735, NCIMB 8645, NCTC ...
100071	C. freundii STI08304(IMET), INA 166, IMET 8304
130291	C. freundii DSM 14984, WA 1
136896	C. freundii CIP 55.60
137337	C. freundii 621-64, CIP 104557
139596	C. freundii CIP 110120
141171	C. freundii CCUG 1
141564	C. freundii CCUG 3076 A
141619	C. freundii CCUG 3829 B
141708	C. freundii CCUG 5019
141714	C. freundii CCUG 5111
143593	C. freundii CCUG 20503
144409	C. freundii CCUG 24902
144566	C. freundii CCUG 25707
144616	C. freundii CCUG 25953 C
144661	C. freundii CCUG 26133
144662	C. freundii CCUG 26134
144663	C. freundii CCUG 26135
144668	C. freundii CCUG 26140
144671	C. freundii CCUG 26144
144697	C. freundii CCUG 26307
144764	C. freundii CCUG 26485
144853	C. freundii CCUG 26829
144856	C. freundii CCUG 26837
144905	C. freundii CCUG 27023
145417	C. freundii CCUG 28422
145885	C. freundii CCUG 29879
146545	C. freundii CCUG 31407
147693	C. freundii CCUG 34013
147976	C. freundii CCUG 34608
148362	C. freundii CCUG 35284
149111	C. freundii CCUG 36867
149911	C. freundii CCUG 38664
149925	C. freundii CCUG 38691
150640	C. freundii CCUG 41842
150803	C. freundii CCUG 42385
150804	C. freundii CCUG 42386
151274	C. freundii CCUG 43597
152759	C. freundii CCUG 47561
154230	C. freundii CCUG 52851
154309	C. freundii CCUG 53014
154551	C. freundii CCUG 54378
154742	C. freundii CCUG 55068
156739	C. freundii CCUG 64719
157319	C. freundii IMI 349011
158901	C. freundii BWKH 142, DSM 110183
163269	C. freundii JCM 24004
163274	C. freundii JCM 24058
163372	C. freundii JCM 2621
163373	C. freundii JCM 2622
163374	C. freundii JCM 2623
163375	C. freundii JCM 2624
163376	C. freundii JCM 2625
163377	C. freundii JCM 2626
163378	C. freundii JCM 2627
163379	C. freundii JCM 2628
163380	C. freundii JCM 2629
163381	C. freundii JCM 2630
163382	C. freundii JCM 2631
163383	C. freundii JCM 2632
163384	C. freundii JCM 2633
163385	C. freundii JCM 2634
163386	C. freundii JCM 2635
163387	C. freundii JCM 2636
163388	C. freundii JCM 2637
163389	C. freundii JCM 2640
163390	C. freundii JCM 2641
163391	C. freundii JCM 2642
163392	C. freundii JCM 2643
163393	C. freundii JCM 2644
163394	C. freundii JCM 2645
163395	C. freundii JCM 2646
163396	C. freundii JCM 2647
163397	C. freundii JCM 2648
163398	C. freundii JCM 2649
172823	C. freundii CIMB 05-2142, CRBIP17.45
174384	C. freundii 2053, TX 2053, DSM 117612
174385	C. freundii 2055, TX 2055, DSM 117613
174386	C. freundii TRS1-B4, DSM 117645
174387	C. freundii 1485, DSM 117906
174388	C. freundii 2167, DSM 117908
174389	C. freundii 4734, DSM 118267
176410	C. freundii TX 5622, DSM 118500

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119458	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17656	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41707	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
17656	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119458	CIP Medium 72	Medium recipe at CIP
119458	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17656	positive	growth	37	mesophilic
41707	positive	growth	30	mesophilic
60027	positive	growth	30	mesophilic
119458	positive	growth	10-41
119458	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
60027	aerobe
119458	facultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
119458	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	+	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	+	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
119458	15792 ChEBI	malonate	-	assimilation
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	+	builds acid from	from API ID32E
119458	17632 ChEBI	nitrate	+	reduction
119458	16301 ChEBI	nitrite	+	reduction
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	+	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	+	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119458	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
119458	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
119458	15688 ChEBI	acetoin		-
119458	17234 ChEBI	glucose			+
68374	35581 ChEBI	indole	-			from API ID32E
68368	35581 ChEBI	indole	-			from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119458	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68382	beta-galactosidase	-	3.2.1.23	from API zym
119458	beta-galactosidase	+	3.2.1.23
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
119458	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
119458	gelatinase	-
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	+	3.4.11.21	from API ID32E
68382	leucine arylamidase	-	3.4.11.1	from API zym
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
119458	lysine decarboxylase	-	4.1.1.18
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119458	ornithine decarboxylase	-	4.1.1.17
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
119458	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
119458	urease	-	3.5.1.5
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

60027

Fatty acid	Percentage	ECL
C16:1 ω7c	29.2	15.819
C16:0	23.4	16
C18:1 ω7c /12t/9t	16.9	17.824
C14:0	8.4	14
C14:0 3OH/C16:1 ISO I	7.9	15.485
C12:0	4.3	12
C15:0	4.1	15
C17:0 CYCLO	3	16.888
C17:0	1.2	17
C13:0 3OH/C15:1 i I/H	1	14.469
C13:0	0.7	13

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
17656	+	-	-	-	+	+	-	-	-	-	-	+	+	+	+	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
17656	+	-	-	-	+	+	-	+	-	+	-	+	+	+/-	+	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
17656	+	+	-	-	+	+	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
17656	+	+	-	-	+	+	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119458	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
60027	-	-	-	-	-	+	+	-	+	+	+	+	-	-	-	-	-	-	+	+	+	+	-	-	+	+	+	+	-	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119458	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Infection	#Patient	-
#Infection	#Medical environment	#Clinic
#Infection	#Patient	#Specimen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
41707		Montpellier	France	FRA	Europe
60027	Human clinical isolate	Montpellier	France	FRA	Europe
119458		Montpellier	France	FRA	Europe	1976

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17656	2	Risk group (German classification) According to TRBA 466
119458	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM5152345v1 assembly for Citrobacter freundii ATCC 43864	contig	GCA_051523455		546	69.65
124043	32875_C01 assembly for Citrobacter freundii NCTC13639	contig	GCA_900460895	546.601	546	38.15

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biological Activity and Phytochemical Characteristics of Star Anise (Illicium verum) Essential Oil and Its Anti-Salmonella Activity on Sous Vide Pumpkin Model.	Kacaniova M, Vukovic NL, Cmikova N, Bianchi A, Garzoli S, Ben Saad R, Ben Hsouna A, Elizondo-Luevano JH, Said-Al Ahl HAH, Hikal WM, Vukic MD.	Foods	10.3390/foods13101505	2024
	An In-Depth Study on the Chemical Composition and Biological Effects of Pelargonium graveolens Essential Oil.	Kacaniova M, Vukic M, Vukovic NL, Cmikova N, Veresova A, Schwarzova M, Babosova M, Porhajasova JI, Kluz M, Waszkiewicz-Robak B, Hsouna AB, Saad RB, Garzoli S.	Foods	10.3390/foods13010033	2023
	Formulation, Characterization and Properties of Hemp Seed Oil and Its Emulsions.	Mikulcova V, Kasparkova V, Humpolicek P, Bunkova L.	Molecules	10.3390/molecules22050700	2017
Pathogenicity	Antimicrobial and Antiviral (SARS-CoV-2) Potential of Cannabinoids and Cannabis sativa: A Comprehensive Review.	Mahmud MS, Hossain MS, Ahmed ATMF, Islam MZ, Sarker ME, Islam MR.	Molecules	10.3390/molecules26237216	2021
	Evaluation of the Antimicrobial Activity of Leaf Extracts of Acokanthera schimperi against Various Disease-Causing Bacteria.	Kenubih A, Belay E, Lemma K.	J Exp Pharmacol	10.2147/jep.s322396	2021
	Fluoroquinolones' Biological Activities against Laboratory Microbes and Cancer Cell Lines.	Suaifan GARY, Mohammed AAM, Alkhawaja BA.	Molecules	10.3390/molecules27051658	2022
	Polyaniline-Pectin nanoparticles immobilized paper based colorimetric sensor for detection of Escherichia coli in milk and milk products.	Anjali MK, Bharath G, Rashmi HM, Avinash J, Naresh K, Raju PN, Raghu HV.	Curr Res Food Sci	10.1016/j.crfs.2022.04.006	2022
Pathogenicity	Isolation and identification of a bacteriocin with antibacterial and antibiofilm activity from Citrobacter freundii.	Shanks RM, Dashiff A, Alster JS, Kadouri DE.	Arch Microbiol	10.1007/s00203-012-0793-2	2012
	First determination of some phenolic compounds and antimicrobial activities of Geranium ibericum subsp. jubatum: A plant endemic to Turkey.	Seker ME, Ay E, AktaS KaraCelIk A, HUseyInoGlu R, Efe D.	Turk J Chem	10.3906/kim-2005-38	2021
	Purification and characterization of a broad spectrum bacteriocin produced by a selected Lactococcus lactis strain 63 isolated from Indian dairy products.	Goyal C, Malik RK, Pradhan D.	J Food Sci Technol	10.1007/s13197-018-3298-4	2018
Pathogenicity	Synthesis and Biological Evaluation of Quinoline Derivatives as a Novel Class of Broad-Spectrum Antibacterial Agents.	Fu HG, Li ZW, Hu XX, Si SY, You XF, Tang S, Wang YX, Song DQ.	Molecules	10.3390/molecules24030548	2019
	Assessment of the Potential Role of Streptomyces in Cave Moonmilk Formation.	Maciejewska M, Adam D, Naome A, Martinet L, Tenconi E, Calusinska M, Delfosse P, Hanikenne M, Baurain D, Compere P, Carnol M, Barton HA, Rigali S.	Front Microbiol	10.3389/fmicb.2017.01181	2017
Enzymology	Sensitive detection of a bacterial pathogen using allosteric probe-initiated catalysis and CRISPR-Cas13a amplification reaction.	Shen J, Zhou X, Shan Y, Yue H, Huang R, Hu J, Xing D.	Nat Commun	10.1038/s41467-019-14135-9	2020
	BaCf3: highly thermostable bacteriocin from Bacillus amyloliquefaciens BTSS3 antagonistic on food-borne pathogens.	Bindiya ES, Tina KJ, Sasidharan RS, Bhat SG.	3 Biotech	10.1007/s13205-019-1639-2	2019
	Photo-induced antibacterial activity of four graphene based nanomaterials on a wide range of bacteria.	Markovic ZM, Jovanovic SP, Maskovic PZ, Danko M, Micusik M, Pavlovic VB, Milivojevic DD, Kleinova A, Spitalsky Z, Todorovic Markovic BM.	RSC Adv	10.1039/c8ra04664f	2018
	Isolation, Characterization, and Antibacterial Activity of Hard-to-Culture Actinobacteria from Cave Moonmilk Deposits.	Adam D, Maciejewska M, Naome A, Martinet L, Coppieters W, Karim L, Baurain D, Rigali S.	Antibiotics (Basel)	10.3390/antibiotics7020028	2018
Pathogenicity	Motile aeromonads from farmed and wild freshwater fish in northern Italy: an evaluation of antimicrobial activity and multidrug resistance during 2013 and 2016.	Borella L, Salogni C, Vitale N, Scali F, Moretti VM, Pasquali P, Alborali GL.	Acta Vet Scand	10.1186/s13028-020-0504-y	2020
Pathogenicity	Synthesis and In Vitro Antimycobacterial and Antibacterial Activity of 8-OMe Ciprofloxacin-Hydrozone/Azole Hybrids.	Xu Z, Zhang S, Feng LS, Li XN, Huang GC, Chai Y, Lv ZS, Guo HY, Liu ML.	Molecules	10.3390/molecules22071171	2017
	GABA-Producing Natural Dairy Isolate From Artisanal Zlatar Cheese Attenuates Gut Inflammation and Strengthens Gut Epithelial Barrier in vitro.	Sokovic Bajic S, Djokic J, Dinic M, Veljovic K, Golic N, Mihajlovic S, Tolinacki M.	Front Microbiol	10.3389/fmicb.2019.00527	2019
Genetics	Lunaemycins, New Cyclic Hexapeptide Antibiotics from the Cave Moonmilk-Dweller Streptomyces lunaelactis MM109^T.	Martinet L, Naome A, Rezende LCD, Tellatin D, Pignon B, Docquier JD, Sannio F, Baiwir D, Mazzucchelli G, Frederich M, Rigali S.	Int J Mol Sci	10.3390/ijms24021114	2023
	Rapid identification of Stenotrophomonas maltophilia by peptide nucleic acid fluorescence in situ hybridization.	Hansen N, Rasmussen AK, Fiandaca MJ, Kragh KN, Bjarnsholt T, Hoiby N, Stender H, Guardabassi L.	New Microbes New Infect	10.1002/nmi2.38	2014
	Potential application of novel technology developed for instant decontamination of personal protective equipment before the doffing step.	Breda Mascarenhas LA, Machado BAS, Rodrigues LAP, Saraiva Hodel KV, Bandeira Santos AA, Freitas Neves PR, da Silva Andrade LPC, Soares MB, de Andrade JB, Badaro R.	PLoS One	10.1371/journal.pone.0250854	2021
Enzymology	Neo-actinomycins A and B, natural actinomycins bearing the 5H-oxazolo[4,5-b]phenoxazine chromophore, from the marine-derived Streptomyces sp. IMB094.	Wang Q, Zhang Y, Wang M, Tan Y, Hu X, He H, Xiao C, You X, Wang Y, Gan M.	Sci Rep	10.1038/s41598-017-03769-8	2017
	Salmonella identification from foods in eight hours: A prototype study with Salmonella Typhimurium.	Koluman A, Celik G, Unlu T.	Iran J Microbiol		2012
	A Novel Assay for Detection of Methicillin-Resistant Staphylococcus aureus Directly From Clinical Samples.	McClure JA, Conly JM, Obasuyi O, Ward L, Ugarte-Torres A, Louie T, Zhang K.	Front Microbiol	10.3389/fmicb.2020.01295	2020
	Characterization of surface proteins of Cronobacter muytjensii using monoclonal antibodies and MALDI-TOF Mass spectrometry.	Jaradat ZW, Rashdan AM, Ababneh QO, Jaradat SA, Bhunia AK.	BMC Microbiol	10.1186/1471-2180-11-148	2011
	Ionic Liquid-Based Materials for Biomedical Applications.	Correia DM, Fernandes LC, Fernandes MM, Hermenegildo B, Meira RM, Ribeiro C, Ribeiro S, Reguera J, Lanceros-Mendez S.	Nanomaterials (Basel)	10.3390/nano11092401	2021
Pathogenicity	Antibiofilm activity of Actinobacillus pleuropneumoniae serotype 5 capsular polysaccharide.	Karwacki MT, Kadouri DE, Bendaoud M, Izano EA, Sampathkumar V, Inzana TJ, Kaplan JB.	PLoS One	10.1371/journal.pone.0063844	2013
Metabolism	A Phenotypic and Genotypic Analysis of the Antimicrobial Potential of Cultivable Streptomyces Isolated from Cave Moonmilk Deposits.	Maciejewska M, Adam D, Martinet L, Naome A, Calusinska M, Delfosse P, Carnol M, Barton HA, Hayette MP, Smargiasso N, De Pauw E, Hanikenne M, Baurain D, Rigali S.	Front Microbiol	10.3389/fmicb.2016.01455	2016
Enzymology	Towards a pathogenic Escherichia coli detection platform using multiplex SYBR®Green Real-time PCR methods and high resolution melting analysis.	Kagkli DM, Folloni S, Barbau-Piednoir E, Van den Eede G, Van den Bulcke M.	PLoS One	10.1371/journal.pone.0039287	2012
Phylogeny	Application of the modular approach to an in-house validation study of real-time PCR methods for the detection and serogroup determination of verocytotoxigenic Escherichia coli.	Kagkli DM, Weber TP, Van den Bulcke M, Folloni S, Tozzoli R, Morabito S, Ermolli M, Gribaldo L, Van den Eede G.	Appl Environ Microbiol	10.1128/aem.05357-11	2011
Phylogeny	Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening of canine fecal samples.	Chaban B, Musil KM, Himsworth CG, Hill JE.	Appl Environ Microbiol	10.1128/aem.00101-09	2009
Phylogeny	Identification by subtractive hybridization of sequences specific for Salmonella enterica serovar enteritidis.	Agron PG, Walker RL, Kinde H, Sawyer SJ, Hayes DC, Wollard J, Andersen GL.	Appl Environ Microbiol	10.1128/aem.67.11.4984-4991.2001	2001
	Research Note: Validation of a new differentiation approach using the commercial ASAP^TM media to detect the Salmonella 441/014 vaccine strain.	Garcia-Llorens J, Garcia C, Paulet P, Le-Tallec B, Dauphin G, Comte S, Catala-Gregori P, Simon F, Sevilla-Navarro S, Sarabia J.	Poult Sci	10.1016/j.psj.2024.103679	2024
Pathogenicity	A New Pipeline for Designing Phage Cocktails Based on Phage-Bacteria Infection Networks.	Molina F, Simancas A, Ramirez M, Tabla R, Roa I, Rebollo JE.	Front Microbiol	10.3389/fmicb.2021.564532	2021
Pathogenicity	Characterization of qnrB-like genes in Citrobacter species of the American Type Culture Collection.	Saga T, Sabtcheva S, Mitsutake K, Ishii Y, Tateda K, Yamaguchi K, Kaku M	Antimicrob Agents Chemother	10.1128/AAC.02396-12	2013

References

#17656	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24397
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41707	; Curators of the CIP;
#60027	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53829
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#119458	Collection of Institut Pasteur ; Curators of the CIP; CIP 103547
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Citrobacter freundii (CCUG 53829, CCM 7187, CIP 103547)

Name and taxonomic classification