Citrobacter amalonaticus CCUG 4860 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Human feces.
Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence
SI-ID 10382
| @ref 20215 |
Last LPSN update
2025-12-16 09:47:47 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Citrobacter |
| Species Citrobacter amalonaticus |
| Full scientific name Citrobacter amalonaticus (Young et al. 1971) Brenner and Farmer 1982 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1784 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | Medium recipe at MediaDive  | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 38207 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 116318 | CIP Medium 72 | Medium recipe at CIP | |||
| 116318 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 90.8 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 116318 | 17632 ChEBI | nitrate | + | reduction | |
| 116318 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116318 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 116318 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 116318 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1784 | + | + | - | + | + | - | - | - | + | - | - | + | + | - | + | + | - | - | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence HQ992946 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas 
 Aquatic Samples |
191 |
 Soil Samples |
59 |
 Animal Samples |
2129 |
 Plant Samples |
139 |
| Total Samples | 2518 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Citrobacter amalonaticus strain FDAARGOS_1489 | complete | 35703.138  | 35703 | 98.74 | | ||
| 66792 | Citrobacter amalonaticus strain FDAARGOS_1489 | complete | 35703.132 | 35703 | 98.74 | | ||
| 66792 | Citrobacter amalonaticus strain FDAARGOS_1489 | complete | 35703.135 | 35703 | 98.74 | | ||
| 124043 | ASM2009933v1 assembly for Citrobacter amalonaticus FDAARGOS_1489 | complete | GCA_020099335  | 35703.130 | 8120644054  | 35703 | 97.84 | |
| 66792 | ASM1832388v1 assembly for Citrobacter amalonaticus JCM 1661 | complete | GCA_018323885 | 35703.125 | 8111737485 | 35703 | 97.55 | |
| 67770 | 28869_B02 assembly for Citrobacter amalonaticus NCTC10805 | contig | GCA_900460855 | 35703.59 | 8116409098 | 35703 | 38.97 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Citrobacter amalonaticus partial 16S rRNA gene, type strain CECT 863T | FR870441 | 1504 |  | 35703 | |
| 20218 | Citrobacter amalonaticus strain LMG 7873 16S ribosomal RNA gene, partial sequence | HQ992946 | 1494 | | 35703 | |
| 124043 | Citrobacter amalonaticus strain CECT 863 U-SMWF-T10-3 16S ribosomal RNA gene, partial sequence. | KX778115 | 1389 | | 35703 | |
| 124043 | Citrobacter amalonaticus strain CECT 863 U-SMWF-T10-5 16S ribosomal RNA gene, partial sequence. | KX778117 | 1357 | | 35703 | |
| 124043 | Citrobacter amalonaticus strain ATCC 25405 16S ribosomal RNA gene, partial sequence. | KX450351 | 1042 | | 35703 | |
| 124043 | Citrobacter amalonaticus strain CIP 82.89 16S ribosomal RNA gene, partial sequence. | KM515966 | 1468 | | 35703 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Gram-negative sepsis caused by a rare pathogen Phytobacter ursingii. | Choice S, Sherman A, Holder K, Harrington E. | BMJ Case Rep | 10.1136/bcr-2023-258384 | 2024 | | |
| Genetics | Resolving taxonomic confusion: establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae. | Smits THM, Arend LNVS, Cardew S, Tang-Hallback E, Mira MT, Moore ERB, Sampaio JLM, Rezzonico F, Pillonetto M. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-022-04413-8 | 2022 | |
| Unveiling six novel bacterial strains for fipronil and thiobencarb biodegradation: efficacy, metabolic pathways, and bioaugmentation potential in paddy soil. | Faridy N, Torabi E, Pourbabaee AA, Osdaghi E, Talebi K. | Front Microbiol | 10.3389/fmicb.2024.1462912 | 2024 | | |
| Evaluation of the antibacterial potential of silver nanoparticles synthesized through the interaction of antibiotic and aqueous callus extract of Fagonia indica. | Adil M, Khan T, Aasim M, Khan AA, Ashraf M. | AMB Express | 10.1186/s13568-019-0797-2 | 2019 | | |
| Biodegradation of Azo Dye Methyl Red by Pseudomonas aeruginosa: Optimization of Process Conditions. | Ikram M, Naeem M, Zahoor M, Rahim A, Hanafiah MM, Oyekanmi AA, Shah AB, Mahnashi MH, Al Ali A, Jalal NA, Bantun F, Sadiq A. | Int J Environ Res Public Health | 10.3390/ijerph19169962 | 2022 | | |
| Enzymology | Isolation of a nonpathogenic strain of Citrobacter sedlakii which expresses Escherichia coli O157 antigen. | Park CH, Martin EA, White EL. | J Clin Microbiol | 10.1128/jcm.36.5.1408-1409.1998 | 1998 | |
| Metabolism | Mutants of Citrobacter freundii that transport and utilize melibiose. | Okazaki N, Xu XJ, Shimamoto T, Kuroda M, Wilson TH, Tsuchiya T. | J Bacteriol | 10.1128/jb.180.13.3480-3482.1998 | 1998 | |
| Enzymology | Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 10.1128/aem.00546-14 | 2014 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Diagnostic Dilemma of Non-resolving Tubal Abscess Caused by Citrobacter amalonaticus Due to Labial Adhesion in a Patient with Pyelonephritis Caused by Escherichia coli, Pyometra and Bacteremia Caused by Bacteroides fragilis. | Ishimaru N, Miura H, Ono M, Mizuki S, Nakajima T, Miyahara Y. | Intern Med | 10.2169/internalmedicine.6276-25 | 2025 | | |
| A novel grass carp pathogen Citrobacter amalonaticus induces severe intestinal inflammation | Liu Z, Xin L, Xu Y, Xu X, Shen Y, Jia L, Xu D, Gui L. | Aquaculture | 2025 | | ||
| Genetics | Electro-Stimulated Dual-Species Catalysis Enables CO2 Fixation Toward Selective 1,4-Butanedioic Acid Biosynthesis. | Mukherjee T, S VM. | ChemSusChem | 10.1002/cssc.202501802 | 2025 | |
| Aztreonam-avibactam resistance rates and resistance mechanisms of NDM and NDM/OXA48-like dual-carbapenemase-producing Enterobacterales in Singapore. | Chew KL, Cabang JC, Abu Bakar NAB, Tan KX, Teo J. | Pathology | 10.1016/j.pathol.2025.04.010 | 2025 | | |
| Enzymology | Molecular cloning, expression, and bioinformatics analysis of the CueO laccase gene from Escherichia coli SDB2. | Deng H, Li S, Huang Y, Li J, Ni Q, Zhao Y, Chen J, Peng X, Li B, Yu D. | Mol Biol Rep | 10.1007/s11033-025-10388-4 | 2025 | |
| Horizontal Gene Transfer of blaNDM-5 Among Three Different Enterobacteriaceae Species Isolated from a Single Patient. | Kim HJ, Koo SH, Choi Q. | Clin Lab | 10.7754/clin.lab.2024.240309 | 2024 | | |
| Carbapenem-resistant Citrobacter amalonaticus and VRE bacteraemia in an immunocompetent patient after a urological Rezum procedure. | Midlick D, Harhay J, Summers NA. | Access Microbiol | 10.1099/acmi.0.000852.v4 | 2024 | | |
| False equivalence: differences in the in vitro activity of ampicillin-sulbactam and amoxicillin-clavulanate in several Enterobacterales species. | Schrader SM, Bacani C, Diaz S, Kuang Y, Oral B, Russell S, Westblade LF, Satlin MJ. | JAC Antimicrob Resist | 10.1093/jacamr/dlaf147 | 2025 | | |
| The Characteristics of Gut Microbiota and Its Relation with Diet in Postmenopausal Osteoporosis. | Chen T, Meng F, Wang N, Hao Y, Fu L. | Calcif Tissue Int | 10.1007/s00223-024-01260-x | 2024 | | |
| Transmission of global clones of NDM-producing Enterobacterales and interspecies spread of IncX3 plasmid harbouring blaNDM-5 in Tokyo. | Harada S, Aoki K, Nomura Y, Ohama Y, Araoka H, Hayama B, Sakurai T, Ueda A, Ishii Y, Tsutsumi T. | J Glob Antimicrob Resist | 10.1016/j.jgar.2024.06.020 | 2024 | | |
| Enzymology | Proteomic and metabolomic analysis reveals new insights into quaternary amine metabolism in Citrobacter amalonaticus CJ25. | Timsina R, Gora RA, Ferguson DJ. | mSphere | 10.1128/msphere.00421-25 | 2025 | |
| In vivo detection of endogenous toxic phenolic compounds of intestine. | Jin WY, Guo JX, Tang R, Wang J, Zhao H, Zhang M, Teng LZ, Sansonetti PJ, Gao YZ. | J Hazard Mater | 10.1016/j.jhazmat.2024.135526 | 2024 | | |
| Metabolism | Comprehensive analysis of faecal metagenomic and serum metabolism revealed the role of gut microbes and related metabolites in detecting colorectal lateral spreading tumours. | Lin H, Chen Y, Zhou M, Wang H, Chen L, Zheng L, Wang Z, Zheng X, Lu S. | Virulence | 10.1080/21505594.2025.2489154 | 2025 | |
| A systematic review of TMAO, microRNAs, and the oral/gut microbiomes in atherosclerosis and myocardial infarction: mechanistic insights and translational opportunities. | Motte LR, Giarritiello F, Sala L, Drago L. | J Transl Med | 10.1186/s12967-025-07224-5 | 2025 | | |
| Microbiological corrosion acceleration of N80 steel in shale gas field produced water containing Citrobacter amalonaticus at 60 °C. | Liu H, Jin Z, Liu H, Meng G, Liu H. | Bioelectrochemistry | 10.1016/j.bioelechem.2022.108253 | 2022 | | |
| Cross-reaction of naturally-produced beta-lactamases from Citrobacter farmeri and Citrobacter amalonaticus with immunological detection of CTX-M enzymes. | Ortiz de la Rosa JM, Bouvier M, Poirel L, Greub G, Blanc D, Nordmann P. | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2022.115760 | 2022 | | |
| Synergistic Effects of Phage-Antibiotic Combinations against Citrobacter amalonaticus. | Manohar P, Madurantakam Royam M, Loh B, Bozdogan B, Nachimuthu R, Leptihn S, Leptihn S. | ACS Infect Dis | 10.1021/acsinfecdis.1c00117 | 2022 | | |
| Delayed Diagnosis of Acute Appendicitis in the Third Trimester of Pregnancy: Diagnostic Pitfalls, Multisurgical Management, and a Prolonged Postoperative Course-A Multidisciplinary Case Report. | Didziokaite G, Kuznecovaite A, Sileikis A, Paliulyte V. | Diagnostics (Basel) | 10.3390/diagnostics15202593 | 2025 | | |
| Causes of fetal death in the Flemish cattle herd in Brazil. | Marian L, Withoeft JA, Costa LDS, Ribeiro LR, Melo IC, Alves RS, Baumbach LF, Pinto MGL, Snak A, Miletti LC, Ferraz SM, Sfaciotte RAP, Canal CW, Casagrande RA. | Vet World | 10.14202/vetworld.2023.766-772 | 2023 | | |
| Microbiome and resistome characterization of patients colonized with carbapenem-resistant Enterobacterales by long-read metagenomic next-generation sequencing of rectal swabs. | Fissel JA, Bergman Y, Campodonico VL, Walsh DM, Fanelli B, Arogyaswamy K, Kwon JH, Milstone AM, Tamma PD, Simner PJ. | JAC Antimicrob Resist | 10.1093/jacamr/dlaf152 | 2025 | | |
| Antibiotic Resistance in Enterococci and Enterobacteriaceae from Laboratory-Reared Fresh Mealworm Larvae (Tenebrio molitor L.) and Their Frass. | Turchi B, Mancini S, Pedonese F, Resci I, Torracca B, Marconi F, Barone C, Nuvoloni R, Fratini F. | Pathogens | 10.3390/pathogens13060456 | 2024 | | |
| Genetics | Characterization of a carbapenem-resistant Citrobacter amalonaticus coharbouring bla IMP-4 and qnrs1 genes. | Zhao Y, Chen X, Hu X, Shi Y, Zhao X, Xu J, Ding H, Wu R, Huang J, Zhao Z. | J Med Microbiol | 10.1099/jmm.0.001364 | 2021 | |
| Emergence of plasmid-mediated colistin resistance mcr-3.5 gene in Citrobacter amalonaticus and Citrobacter sedlakii isolated from healthy individual in Thailand. | Phuadraksa T, Wichit S, Songtawee N, Tantimavanich S, Isarankura-Na-Ayudhya C, Yainoy S. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.1067572 | 2022 | | |
| Enzymology | Isolation and characterization of a novel choline degrading Citrobacter amalonaticus strain from the human gut. | Kashyap J, Ringiesn JR, Schwab N, Ferguson DJ. | Curr Res Microb Sci | 10.1016/j.crmicr.2022.100157 | 2022 | |
| Infective endocarditis due to Citrobacter koseri following testicular trauma: case report and literature review. | Casallas-Barrera JO, Poveda-Henao CM, Mantilla-Viviescas KA, Silva-Monsalve E. | Ther Adv Infect Dis | 10.1177/20499361241237617 | 2024 | | |
| Multiple rare organisms causing ventriculoperitoneal shunt infection and brain abscess. | Shihadeh OM, Amin H, Hammadi F. | Qatar Med J | 10.5339/qmj.2023.7 | 2023 | | |
| Factors related to successful mesh salvage with negative pressure wound therapy: a retrospective cohort study. | Gonzalez-Munoz A, Vallejo-Soto JC, Barragan-Pinilla JD, Pesce A, Ramirez-Giraldo C. | Hernia | 10.1007/s10029-024-03233-3 | 2024 | | |
| Leveraging stewardship to promote ceftriaxone use in severe infections with low- and no-risk AmpC Enterobacterales. | Hardy ME, Kenney RM, Tibbetts RJ, Shallal AB, Veve MP. | Antimicrob Agents Chemother | 10.1128/aac.00826-23 | 2023 | | |
| MALDI-TOF Mass Spectrometry and 16S rRNA Gene Sequence Analysis for the Identification of Foodborne Clostridium Spp. | Sulaiman IM, Miranda N, Simpson S. | J AOAC Int | 10.1093/jaoacint/qsab070 | 2021 | | |
| Plasmid Dissemination in Multispecies Carbapenemase-Producing Enterobacterales Outbreaks Involving Clinical and Environmental Strains: A Narrative Review. | Alglave L, Faure K, Mullie C. | Microorganisms | 10.3390/microorganisms13040810 | 2025 | | |
| Bacteria and antimicrobial resistance profile during the composting process of wastes from animal production. | Ferreira PFA, Xavier JF, Nunes JF, Fonseca IP, de Mattos de Oliveira Coelho S, Soares de Souza MM, da Silva Coelho I. | Braz J Microbiol | 10.1007/s42770-023-00912-8 | 2023 | | |
| Gut Microbiota Diversity in 16 Stingless Bee Species (Hymenoptera: Apidae: Meliponini). | Ramirez-Ahuja ML, Pena-Carrillo KI, Gomez-Govea MA, Jimenez-Martinez ML, Trujillo-Rodriguez GJ, Espinoza-Ruiz M, Guzman Velasco A, Flores AE, Gonzalez-Rojas JI, Resendez-Perez D, Rodriguez-Sanchez IP. | Microorganisms | 10.3390/microorganisms13071645 | 2025 | | |
| Aztreonam-avibactam Demonstrates Potent Activity Against Carbapenem-resistant Enterobacterales Collected From US Medical Centers Over a 6-year Period (2017-2022). | Papp-Wallace KM, Sader HS, Maher JM, Kimbrough JH, Castanheira M. | Open Forum Infect Dis | 10.1093/ofid/ofaf250 | 2025 | | |
| Phylogeny | Healthcare-related transmission of mobile genetic elements co-carrying bla NDM and 16S rRNA methyltransferase genes in multiple Enterobacterales. | Maguire M, Serna C, Delgado-Blas JF, Clarke C, DeLappe N, Cormican M, Coughlan SC, Miliotis G, Gonzalez-Zorn B, Burke LP. | Microb Genom | 10.1099/mgen.0.001473 | 2025 | |
| Detection of Salmonella Mbandaka Carrying the blaCTX-M-8 Gene Located on IncI1 Plasmid Isolated from a Broiler Flock Environment. | Zajac M, Skarzynska M, Lalak A, Iwan E, Wasyl D. | Pathogens | 10.3390/pathogens13090723 | 2024 | | |
| Role of Mobile Phone Use in Spreading Multi-Drug Resistant Bacteria Implicated in Causation of Diarrheal and Nosocomial Infections at Kitale County Hospital. | Godfrey JS, Mbogo K, Wekesa AW. | East Afr Health Res J | 10.24248/eahrj.v7i2.736 | 2023 | | |
| Metabolism | Fixation of CO2, electron donor and redox microenvironment regulate succinic acid production in Citrobacter amalonaticus. | Amulya K, Mohan SV. | Sci Total Environ | 10.1016/j.scitotenv.2019.133838 | 2019 | |
| Serological Distribution of Salmonella enterica subsp. Isolated from Feces of Domesticated Crested Gecko (Correlophus ciliates) in Busan Province, South Korea. | Bae IK, Park YK, Park SH, Hong JS. | Life (Basel) | 10.3390/life15030405 | 2025 | | |
| Unique Regulation of Sed-1 beta-Lactamase in Citrobacter sedlakii: Insights on Resistance to Third-Generation Cephalosporin | Watanabe M, Nakano R, Yamamoto K, Nakano A, Suzuki Y, Saito K, Nakashima S, Endo K, Narita K, Yano H. | Antibiotics (Basel) | 2025 | | ||
| Pathogenicity | A gut commensal bacterium promotes black soldier fly larval growth and development partly via modulation of intestinal protein metabolism. | Luo X, Fang G, Chen K, Song Y, Lu T, Tomberlin JK, Zhan S, Huang Y. | mBio | 10.1128/mbio.01174-23 | 2023 | |
| Rare Plasmid-Mediated AmpC Beta-Lactamase DHA-1 Located on Easy Mobilized IS26-Related Genetic Element Detected in Escherichia coli from Livestock and Food in Germany. | Manfreda C, Kaesbohrer A, Schmoger S, Skladnikiewicz-Ziemer T, Grobbel M, Irrgang A. | Microorganisms | 10.3390/microorganisms12030632 | 2024 | | |
| Pathogenicity | Characterization of a multidrug resistant Citrobacter amalonaticus clinical isolate harboring blaNDM-1 and mcr-1.5 genes. | Faccone D, Albornoz E, Tijet N, Biondi E, Gomez S, Pasteran F, Vazquez M, Melano RG, Corso A. | Infect Genet Evol | 10.1016/j.meegid.2018.10.020 | 2019 | |
| Tunable production of succinic acid at elevated pressures of CO2 in a high pressure gas fermentation reactor. | Amulya K, Kopperi H, Venkata Mohan S. | Bioresour Technol | 10.1016/j.biortech.2020.123327 | 2020 | | |
| Antimicrobial Resistance Patterns and ESBL of Uropathogens Isolated from Adult Females in Najran Region of Saudi Arabia. | Alasmary MY. | Clin Pract | 10.3390/clinpract11030080 | 2021 | | |
| Prospective evaluation of real-world performance and clinical impact of the Biofire FilmArray joint infection panel. | Berinson B, Tanida K, Spenke L, Krivec L, Keller J, Rolvien T, Christner M, Lutgehetmann M, Aepfelbacher M, Klatte TO, Rohde H. | Microbiol Spectr | 10.1128/spectrum.02239-24 | 2025 | | |
| Pathogenicity | Comparison between Symptomatic and Asymptomatic Mice after Clostridioides difficile Infection Reveals Novel Inflammatory Pathways and Contributing Microbiota. | AbdelKhalek A, Narayanan SK. | Microorganisms | 10.3390/microorganisms10122380 | 2022 | |
| Epidemiology and Risk Factors of Carbapenemase-Producing Enterobacteriaceae Acquisition and Colonization at a Korean Hospital over 1 Year. | Kim HJ, Hyun J, Jeong HS, Lee YK. | Antibiotics (Basel) | 10.3390/antibiotics12040759 | 2023 | | |
| Adding insult to injury: A review of infections following envenomings. | Leonard D, Boyd A, Dugon MM. | Toxicon X | 10.1016/j.toxcx.2025.100230 | 2025 | | |
| Metabolism | Two contrary roles of Fe3O4 nanoparticles on kinetic and thermodynamic of Paclitaxel degradation by Citrobacter amalonaticus Rashtia immobilized on sodium alginate gel beads. | Zamani H, Rakhshaee R, Garakoui SR. | J Hazard Mater | 10.1016/j.jhazmat.2017.10.061 | 2018 | |
| Low-volume enrichment method supports high throughput bacteriophage screening and isolation from wastewater. | Kenney PO, Gomez-Duarte OG. | PLoS One | 10.1371/journal.pone.0298833 | 2024 | | |
| Antimicrobial Activities of Aztreonam-Avibactam and Comparator Agents against Enterobacterales Analyzed by ICU and Non-ICU Wards, Infection Sources, and Geographic Regions: ATLAS Program 2016-2020. | Pierard D, Hermsen ED, Kantecki M, Arhin FF. | Antibiotics (Basel) | 10.3390/antibiotics12111591 | 2023 | | |
| In Vitro Activity of Ceftibuten-Avibactam against beta-Lactamase-Positive Enterobacterales from the ATLAS Global Surveillance Program. | Karlowsky JA, Hackel MA, Stone GG, Sahm DF. | Antimicrob Agents Chemother | 10.1128/aac.01346-22 | 2023 | | |
| Genetics | Nationwide molecular epidemiology of carbapenemase-producing Citrobacter spp. in France in 2019 and 2020. | Biez L, Bonnin RA, Emeraud C, Birer A, Jousset AB, Naas T, Dortet L. | mSphere | 10.1128/msphere.00366-23 | 2023 | |
| Phylogeny | One Health Spread of 16S Ribosomal RNA Methyltransferase-Harboring Gram-Negative Bacterial Genomes: An Overview of the Americas. | Sellera FP, Fuentes-Castillo D, Furlan JPR. | Pathogens | 10.3390/pathogens12091164 | 2023 | |
| Prevalence of Multidrug-Resistant Bacteria in Healthcare-Associated Bloodstream Infections at Hospitals in Riyadh, Saudi Arabia. | Banawas SS, Alobaidi AS, Dawoud TM, AlDehaimi A, Alsubaie FM, Abdel-Hadi A, Manikandan P. | Pathogens | 10.3390/pathogens12091075 | 2023 | | |
| The Prevalence of Multidrug-Resistant Enterobacteriaceae among Neonates in Kuwait. | Alajmi RZ, Alfouzan WA, Mustafa AS. | Diagnostics (Basel) | 10.3390/diagnostics13081505 | 2023 | | |
| Colonization with resistant bacteria in hospital employees: an epidemiological surveillance and typing study. | Badinski T, Seiffert SN, Grassli F, Babouee Flury B, Besold U, Betschon E, Biggel M, Brucher A, Cusini A, Dorr T, Egli A, Goppel S, Gusewell S, Keller J, von Kietzell M, Moller JC, Nolte O, Ortner M, Roloff T, Ruetti M, Schlegel M, Seth-Smith HMB, Stephan R, Stocker R, Vuichard-Gysin D, Willi B, Kuster SP, Kahlert CR, Kohler P, SURPRISE Study Group. | Antimicrob Agents Chemother | 10.1128/aac.00985-24 | 2024 | | |
| Biotechnology | Strategy for Optimizing Vitamin B12 Production in Pseudomonas putida KT2440 Using Metabolic Modeling. | Prieto-de Lima TS, Rojas-Jimenez K, Vaglio C. | Metabolites | 10.3390/metabo14110636 | 2024 | |
| Nanopore-based enrichment of antimicrobial resistance genes - a case-based study. | Viehweger A, Marquet M, Holzer M, Dietze N, Pletz MW, Brandt C. | GigaByte | 10.46471/gigabyte.75 | 2023 | | |
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| In vitro activity of cefiderocol against MBL-producing Gram-negative bacteria collected in North America and Europe in five consecutive annual multinational SIDERO-WT surveillance studies (2014-2019). | Takemura M, Wise MG, Hackel MA, Sahm DF, Yamano Y. | J Antimicrob Chemother | 10.1093/jac/dkad200 | 2023 | | |
| Enzymology | Microbial degradation of Paclitaxel using Citrobacter amalonaticus Rashtia isolated from pharmaceutical wastewater: kinetic and thermodynamic study. | Zamani H, Grakoee SR, Rakhshaee R. | World J Microbiol Biotechnol | 10.1007/s11274-016-2087-3 | 2016 | |
| Genetics | Phenotypic Characterization and Whole-Genome Analysis of a Novel Bacteriophage HCF1 Infecting Citrobacter amalonaticus and C. freundii. | Kumar P, Meghvansi MK, Kamboj DV. | Front Microbiol | 10.3389/fmicb.2021.644013 | 2021 | |
| Enterobacter Strain IPPBiotE33 Displays a Synergistic Effect with Bacillus thuringiensis Bt185. | Mi L, Gu Z, Li Y, Xu W, Shu C, Zhang J, Bai X, Geng L. | Int J Mol Sci | 10.3390/ijms241814193 | 2023 | | |
| Beta-Lactam-Resistant Enterobacterales Isolated from Landfill Leachates. | Mondragon-Quiguanas A, Villaquiran-Muriel MA, Rivera SP, Rosero-Garcia D, Aranaga C, Correa A, Falco A. | Pathogens | 10.3390/pathogens11101077 | 2022 | | |
| Metabolism | Isolation and identification of histamine-producing Enterobacteriaceae from Qu fermentation starter for Chinese rice wine brewing. | Zhang J, Zhu X, Xu R, Gao Q, Wang D, Zhang Y. | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2018.05.014 | 2018 | |
| Wastewater Surveillance Detected Carbapenemase Enzymes in Clinically Relevant Gram-Negative Bacteria in Helsinki, Finland; 2011-2012. | Tiwari A, Paakkanen J, Osterblad M, Kirveskari J, Hendriksen RS, Heikinheimo A. | Front Microbiol | 10.3389/fmicb.2022.887888 | 2022 | | |
| New insights on mcr-1-harboring plasmids from human clinical Escherichia coli isolates. | Martino F, Petroni A, Menocal MA, Corso A, Melano R, Faccone D. | PLoS One | 10.1371/journal.pone.0294820 | 2024 | | |
| Prevalence of anaerobic bacteria in surgical site infections in Lagos University Teaching Hospital. | Chukwuma ST, Balogun OS, Oduyebo OO, Oshun PO, Osuagwu CS, Rotimi VO. | J West Afr Coll Surg | 10.4103/jwas.jwas_91_23 | 2024 | | |
| Antimicrobial resistance and prevalence of extended-spectrum beta-lactamase-producing Klebsiella species in East Tennessee dairy farms. | Gelalcha BD, Gelgie AE, Kerro Dego O. | Microbiol Spectr | 10.1128/spectrum.03537-23 | 2024 | | |
| Genetics | Overrepresentation of Enterobacteriaceae and Escherichia coli is the major gut microbiome signature in Crohn's disease and ulcerative colitis; a comprehensive metagenomic analysis of IBDMDB datasets. | Khorsand B, Asadzadeh Aghdaei H, Nazemalhosseini-Mojarad E, Nadalian B, Nadalian B, Houri H. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.1015890 | 2022 | |
| A Surveillance Study of Culturable and Antimicrobial-Resistant Bacteria in Two Urban WWTPs in Northern Spain. | Pino-Hurtado MS, Fernandez-Fernandez R, Campana-Burguet A, Gonzalez-Azcona C, Lozano C, Zarazaga M, Torres C. | Antibiotics (Basel) | 10.3390/antibiotics13100955 | 2024 | | |
| Response Surface Methodology Application for Bacteriophage-Antibiotic Antibiofilm Activity Optimization. | Grygorcewicz B, Glizniewicz M, Olszewska P, Milek D, Czajkowski A, Serwin N, Cecerska-Heryc E, Rakoczy R. | Microorganisms | 10.3390/microorganisms11092352 | 2023 | | |
| Enzymology | Carbapenem-resistant Citrobacter spp. isolated in Spain from 2013 to 2015 produced a variety of carbapenemases including VIM-1, OXA-48, KPC-2, NDM-1 and VIM-2. | Arana DM, Ortega A, Gonzalez-Barbera E, Lara N, Bautista V, Gomez-Ruiz D, Saez D, Fernandez-Romero S, Aracil B, Perez-Vazquez M, Campos J, Oteo J, Spanish Antibiotic Resistance Surveillance Programme Collaborating Group. | J Antimicrob Chemother | 10.1093/jac/dkx325 | 2017 | |
| Pathogenicity | First Clinical Case of In Vivo Acquisition of DHA-1 Plasmid-Mediated AmpC in a Salmonella enterica subsp. enterica Isolate. | Clement M, Keller PM, Bernasconi OJ, Stirnimann G, Frey PM, Bloemberg GV, Sendi P, Endimiani A. | Antimicrob Agents Chemother | 10.1128/aac.00992-19 | 2019 | |
| Evaluation of an expanded antibiotic resistance gene panel on prediction of antimicrobial susceptibility results for Gram-negative bacteria in blood cultures. | Manuel C, Maynard R, Simpkins S, Haro M, Humphries R. | J Clin Microbiol | 10.1128/jcm.01020-24 | 2024 | | |
| Intestinal microbiota and metabolome perturbations in ischemic and idiopathic dilated cardiomyopathy. | Wang Y, Xie Y, Mahara G, Xiong Y, Xiong Y, Zheng Q, Chen J, Zhang W, Zhou H, Li Q. | J Transl Med | 10.1186/s12967-023-04605-6 | 2024 | | |
| Surface Engineering of Escherichia coli to Display Its Phytase (AppA) and Functional Analysis of Enzyme Activities. | Munoz-Munoz PLA, Teran-Ramirez C, Mares-Alejandre RE, Marquez-Gonzalez AB, Madero-Ayala PA, Melendez-Lopez SG, Ramos-Ibarra MA. | Curr Issues Mol Biol | 10.3390/cimb46040215 | 2024 | | |
| Diazotrophic abundance and community structure associated with three meadow plants on the Qinghai-Tibet Plateau. | Nshimiyimana JB, Zhao K, Wang W, Kong W. | Front Microbiol | 10.3389/fmicb.2023.1292860 | 2023 | | |
| Antibiotic prophylaxis in flexible ureterorenoscopy with negative urine culture. | Mendez-Guerrero DM, Buitrago-Carrascal C, Puentes-Bernal AF, Cruz-Arevalo DA, Camacho-Nieto D, Calderon MA, Alvarez-Restrepo JC, Brijaldo-Carvajal MA, Perdomo-Bernal N, Moreno-Matson MC, Ibanez-Pinilla M, Daza-Vergara J. | BJUI Compass | 10.1002/bco2.242 | 2023 | | |
| Genetics | Genomic Characterization of Carbapenemase-Producing Enterobacteriaceae from Clinical and Epidemiological Human Samples. | Tristancho-Baro A, Franco-Fobe LE, Ariza MP, Milagro A, Lopez-Calleja AI, Fortuno B, Lopez C, Latorre-Millan M, Clusa L, Martinez R, Torres C, Rezusta A. | Antibiotics (Basel) | 10.3390/antibiotics14010042 | 2025 | |
| Fecal Microbiota Transplant for Refractory Clostridium difficile Infection Interrupts 25-Year History of Recurrent Urinary Tract Infections. | Wang T, Kraft CS, Woodworth MH, Dhere T, Eaton ME. | Open Forum Infect Dis | 10.1093/ofid/ofy016 | 2018 | | |
| Pathogenicity | Purification, characterization and functional analysis of the immune molecule lectin from the haemolymph of blue swimmer crab Portunus pelagicus and their antibiofilm properties. | Jayanthi S, Ishwarya R, Anjugam M, Iswarya A, Karthikeyan S, Vaseeharan B. | Fish Shellfish Immunol | 10.1016/j.fsi.2017.01.019 | 2017 | |
| Phylogeny | Assessment of bacterial communities of Coptotermes gestroi termite workers attacking Ironwood trees (Casuarina equisetifolia) in Guam for the presence of Ironwood tree decline-associated pathogens. | Setia G, Chen J, Schlub R, Husseneder C. | Front Microbiol | 10.3389/fmicb.2024.1454861 | 2024 | |
| Citrobacter amalonaticus human urinary tract infections, Marseille, France. | Garcia V, Abat C, Moal V, Rolain JM. | New Microbes New Infect | 10.1016/j.nmni.2016.01.003 | 2016 | | |
| Metabolism | Enhanced biohydrogen production from corn stover by the combination of Clostridium cellulolyticum and hydrogen fermentation bacteria. | Zhang SC, Lai QH, Lu Y, Liu ZD, Wang TM, Zhang C, Xing XH. | J Biosci Bioeng | 10.1016/j.jbiosc.2016.03.014 | 2016 | |
| Citrobacter amalonaticus Inhibits the Growth of Citrobacter rodentium in the Gut Lumen. | Mullineaux-Sanders C, Carson D, Hopkins EGD, Glegola-Madejska I, Escobar-Zepeda A, Browne HP, Lawley TD, Frankel G. | mBio | 10.1128/mbio.02410-21 | 2021 | | |
| Metabolism | Detoxification of mercury pollutant leached from spent fluorescent lamps using bacterial strains. | Al-Ghouti MA, Abuqaoud RH, Abu-Dieyeh MH. | Waste Manag | 10.1016/j.wasman.2015.12.013 | 2016 | |
| Distribution of Antibiotic-Resistant Enterobacteriaceae Pathogens in Potable Spring Water of Eastern Indian Himalayas: Emphasis on Virulence Gene and Antibiotic Resistance Genes in Escherichia coli. | Singh AK, Das S, Kumar S, Gajamer VR, Najar IN, Lepcha YD, Tiwari HK, Singh S. | Front Microbiol | 10.3389/fmicb.2020.581072 | 2020 | | |
| Joining the bacterial conversation: increasing the cultivation efficiency of soil bacteria with acyl-homoserine lactones and cAMP. | Lopez Marin MA, Strejcek M, Uhlik O. | Microbiol Spectr | 10.1128/spectrum.01860-23 | 2023 | | |
| Co-integrate Col3m bla NDM-1-harboring plasmids in clinical Providencia rettgeri isolates from Argentina. | De Belder D, Martino F, Tijet N, Melano RG, Faccone D, De Mendieta JM, Rapoport M, Albornoz E, Petroni A, Tuduri E, Derdoy L, Cogut S, Errecalde L, Pasteran F, Corso A, Gomez SA. | Microbiol Spectr | 10.1128/spectrum.01651-23 | 2023 | | |
| Pathogenicity | Synergistic action of mucoactive drugs and phages against Pseudomonas aeruginosa and Klebsiella pneumoniae. | Sui B, Li X, Li N, Tao Y, Wang L, Xu Y, Hou Y, Hu B, Tan D. | Microbiol Spectr | 10.1128/spectrum.01601-24 | 2025 | |
| Pathogenicity | Antibiotic Resistance, Virulence Factors, Phenotyping, and Genotyping of Non-Escherichia coli Enterobacterales from the Gut Microbiota of Healthy Subjects. | Amaretti A, Righini L, Candeliere F, Musmeci E, Bonvicini F, Gentilomi GA, Rossi M, Raimondi S. | Int J Mol Sci | 10.3390/ijms21051847 | 2020 | |
| Cereal leaf beetle-associated bacteria enhance the survival of their host upon insecticide treatments and respond differently to insecticides with different modes of action. | Wielkopolan B, Szabelska-Beresewicz A, Gawor J, Obrepalska-Steplowska A. | Environ Microbiol Rep | 10.1111/1758-2229.13247 | 2024 | | |
| Metabolism | 2'-FL and cross-feeding bifidobacteria reshaped the gut microbiota of infants with atopic dermatitis ex vivo and prevented dermatitis in mice post-microbiota transplantation through retinol metabolism activation. | Qi C, Li Z, Tu H, Sun F, Guo W, Di C, He R, Ze X, Zhang L, Gao R, Hu P, Yang W, Li K, Liu J, Pan X, Jin Z, Sun J. | Gut Microbes | 10.1080/19490976.2025.2474148 | 2025 | |
| Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals. | Shan S, Cheng W, Li Y, Zhang M, Liu Z, Wang Y, Wei X, Fu Z, Wu S, Du D, Guo Z. | BMC Genomics | 10.1186/s12864-022-09069-4 | 2022 | | |
| Co-addition of manure increases the dissipation rates of tylosin A and the numbers of resistance genes in laboratory incubation experiments. | Li Q, Wang Y, Zou YD, Liao XD, Liang JB, Xin W, Wu YB. | Sci Total Environ | 10.1016/j.scitotenv.2015.04.117 | 2015 | | |
| Purification and Characterization of a Novel Thermostable Papain Inhibitor from Moringa oleifera with Antimicrobial and Anticoagulant Properties. | Cotabarren J, Claver S, Payrol JA, Garcia-Pardo J, Obregon WD. | Pharmaceutics | 10.3390/pharmaceutics13040512 | 2021 | | |
| Molecular Epidemiology of Global Carbapenemase-Producing Citrobacter spp. (2015-2017). | Nobrega D, Peirano G, Matsumura Y, Pitout JDD. | Microbiol Spectr | 10.1128/spectrum.04144-22 | 2023 | | |
| Metabolism | Quorum sensing activity of Citrobacter amalonaticus L8A, a bacterium isolated from dental plaque. | Goh SY, Khan SA, Tee KK, Abu Kasim NH, Yin WF, Chan KG. | Sci Rep | 10.1038/srep20702 | 2016 | |
| Genetics | Selected commensals educate the intestinal vascular and immune system for immunocompetence. | Romero R, Zarzycka A, Preussner M, Fischer F, Hain T, Herrmann JP, Roth K, Keber CU, Suryamohan K, Raifer H, Luu M, Leister H, Bertrams W, Klein M, Shams-Eldin H, Jacob R, Mollenkopf HJ, Rajalingam K, Visekruna A, Steinhoff U. | Microbiome | 10.1186/s40168-022-01353-5 | 2022 | |
| Incidence and Time-to-Onset of Carbapenemase-Producing Enterobacterales (CPE) Infections in CPE Carriers: a Retrospective Cohort Study. | Hoellinger B, Deboscker S, Danion F, Lavigne T, Severac F, Ruch Y, Ursenbach A, Lefebvre N, Boyer P, Hansmann Y. | Microbiol Spectr | 10.1128/spectrum.01868-22 | 2022 | | |
| Antibiotic Resistance Patterns of Uropathogens Causing Urinary Tract Infections in Children with Congenital Anomalies of Kidney and Urinary Tract. | Isac R, Basaca DG, Olariu IC, Stroescu RF, Ardelean AM, Steflea RM, Gafencu M, Chirita-Emandi A, Bagiu IC, Horhat FG, Vulcanescu DD, Ionescu D, Doros G. | Children (Basel) | 10.3390/children8070585 | 2021 | | |
| Performance Evaluation of the Newly Developed In Vitro Rapid Diagnostic Test for Detecting OXA-48-Like, KPC-, NDM-, VIM- and IMP-Type Carbapenemases: The RESIST-5 O.K.N.V.I. Multiplex Lateral Flow Assay. | Hong J, Kang D, Kim D. | Antibiotics (Basel) | 10.3390/antibiotics10040460 | 2021 | | |
| Profiling of Plant Growth-Promoting Metabolites by Phosphate-Solubilizing Bacteria in Maize Rhizosphere. | Shen M, Li J, Dong Y, Liu H, Peng J, Hu Y, Sun Y. | Plants (Basel) | 10.3390/plants10061071 | 2021 | | |
| Thermostability enhancement of Escherichia coli phytase by error-prone polymerase chain reaction (epPCR) and site-directed mutagenesis. | Xing H, Wang P, Yan X, Yang Y, Li X, Liu R, Zhou Z. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1167530 | 2023 | | |
| PICC-associated infection with Escherichia hermannii: A case report and review of the literature. | Sedlock C, Tokarczyk M, Sternlieb M, Flomenberg P. | IDCases | 10.1016/j.idcr.2018.e00444 | 2018 | | |
| Antimicrobial use and aetiology of bloodstream infections in critically ill patients during early stages of SARS-CoV-2 pandemic. | Torrecillas M, Gumucio VD, Padulles A, Tubau F, Marco D, Shaw E, Fernandez-Huerta M, Maisterra K, Grau I, Petito MM, Berbel D, Puig-Asensio M, Perez XL, Dominguez MA, Sabater J, Ardanuy C, Camara J. | Infect Prev Pract | 10.1016/j.infpip.2022.100241 | 2022 | | |
| Pretreatment with an antibiotics cocktail enhances the protective effect of probiotics by regulating SCFA metabolism and Th1/Th2/Th17 cell immune responses. | Xu J, Xu H, Guo X, Zhao H, Wang J, Li J, He J, Huang H, Huang C, Zhao C, Li Y, Zhou Y, Peng Y, Nie Y. | BMC Microbiol | 10.1186/s12866-024-03251-2 | 2024 | | |
| The Diversity, Resistance Profiles and Plasmid Content of Klebsiella spp. Recovered from Dairy Farms Located around Three Cities in Pakistan. | Habib S, Gibbon MJ, Couto N, Kakar K, Habib S, Samad A, Munir A, Fatima F, Mohsin M, Feil EJ. | Antibiotics (Basel) | 10.3390/antibiotics12030539 | 2023 | | |
| Phylogeny | The effect of heavy metals on microbial community structure of a sulfidogenic consortium in anaerobic semi-continuous stirred tank reactors. | Kieu HT, Horn H, Muller E. | Bioprocess Biosyst Eng | 10.1007/s00449-013-1012-5 | 2014 | |
| Bats (Mammalia: Chiroptera) in urban-rural interfaces: community structure associated with pathogen screening in São Paulo-the largest metropolitan region in Brazil. | Brito JEC, de Mello BGV, Gaeta NC, Batista JMN, Brito TR, Agostinho WC, Brandao PE, Heinemann MB, Dias RA. | Vet Res Commun | 10.1007/s11259-023-10112-2 | 2023 | | |
| Monitoring Carbapenem-Resistant Enterobacterales in the Environment to Assess the Spread in the Community. | Urase T, Goto S, Sato M. | Antibiotics (Basel) | 10.3390/antibiotics11070917 | 2022 | | |
| Effect of early directed implementation of family-integrated care measures on colonisation with Enterobacteriaceae in preterm neonates in NICU. | Parm U, Tiit-Vesingi A, Soeorg H, Stsepetova J, Truusalu K, Vorobjov S, Lutsar I, Metsvaht T. | BMJ Paediatr Open | 10.1136/bmjpo-2022-001712 | 2023 | | |
| Immobilization of Microbes for Biodegradation of Microcystins: A Mini Review. | Zhang J, Wei J, Massey IY, Peng T, Yang F. | Toxins (Basel) | 10.3390/toxins14080573 | 2022 | | |
| Minimum inhibitory concentration of nano-silver bactericides for beneficial microbes and its effect on Ralstonia solanacearum and seed germination of Japanese Cucumber (Cucumis sativus). | Sotoodehnia P, Mazlan N, Mohd Saud H, Samsuri WA, Habib SH, Soltangheisi A. | PeerJ | 10.7717/peerj.6418 | 2019 | | |
| Phylogeny | Spread of Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates Producing NDM-Type Metallo-beta-Lactamase in Myanmar. | Takei S, Lu YJ, Tohya M, Watanabe S, Misawa S, Tabe Y, Miida T, Mya S, Tin HH, Tada T, Kirikae T. | Microbiol Spectr | 10.1128/spectrum.00673-22 | 2022 | |
| Outbreak of OXA-48-producing Enterobacterales in a haematological ward associated with an uncommon environmental reservoir, France, 2016 to 2019. | Jolivet S, Couturier J, Vuillemin X, Gouot C, Nesa D, Adam M, Brissot E, Mohty M, Bonnin RA, Dortet L, Barbut F. | Euro Surveill | 10.2807/1560-7917.es.2021.26.21.2000118 | 2021 | | |
| Risk factors and molecular features of extended-spectrum beta-lactamase producing bacteria at southwest of Saudi Arabia. | Al-Garni SM, Ghonaim MM, Ahmed MMM, Al-Ghamdi AS, Ganai FA. | Saudi Med J | 10.15537/smj.2018.12.23273 | 2018 | | |
| Outbreak of multi-drug-resistant (MDR) Shigella flexneri in northern Australia due to an endemic regional clone acquiring an IncFII plasmid. | Guglielmino CJD, Kakkanat A, Forde BM, Rubenach S, Merone L, Stafford R, Graham RMA, Beatson SA, Jennison AV. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-020-04029-w | 2021 | | |
| Delivery Mode Shapes the Composition of the Lower Airways Microbiota in Newborns. | Cardelli E, Calvigioni M, Vecchione A, Macera L, Mazzantini D, Celandroni F, Panattoni A, Pistello M, Maggi F, Ghelardi E, Mannella P. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.808390 | 2021 | | |
| Multispecies Outbreak of Verona Integron-Encoded Metallo-ß-Lactamase-Producing Multidrug Resistant Bacteria Driven by a Promiscuous Incompatibility Group A/C2 Plasmid. | de Man TJB, Yaffee AQ, Zhu W, Batra D, Alyanak E, Rowe LA, McAllister G, Moulton-Meissner H, Boyd S, Flinchum A, Slayton RB, Hancock S, Spalding Walters M, Laufer Halpin A, Rasheed JK, Noble-Wang J, Kallen AJ, Limbago BM. | Clin Infect Dis | 10.1093/cid/ciaa049 | 2021 | | |
| Enzymology | How frequently are hospitalized patients colonized with carbapenem-resistant Enterobacteriaceae (CRE) already on contact precautions for other indications? | Goodman KE, Simner PJ, Klein EY, Kazmi AQ, Gadala A, Rock C, Tamma PD, Cosgrove SE, Maragakis LL, Milstone AM, CDC Prevention Epicenters Program. | Infect Control Hosp Epidemiol | 10.1017/ice.2018.236 | 2018 | |
| Prevalence and factors associated with faecal carriage of extended-spectrum beta-lactamase-producing Enterobacterales among peripartum women in the community in Cambodia. | de Lauzanne A, Sreng N, Foucaud E, Sok T, Chon T, Yem C, Hak V, Heng S, Soda M, Gouali M, Nadimpalli M, Inghammar M, Rabenandrasana MAN, Collard JM, Vray M, Hello SL, Kerleguer A, Piola P, Delarocque-Astagneau E, Guillemot D, Huynh BT, Borand L, BIRDY study group. | J Antimicrob Chemother | 10.1093/jac/dkac224 | 2022 | | |
| Septicaemia of subterranean termites Coptotermes curvignathus caused by disturbance of bacteria isolated from termite gut and its foraging pathways. | Chin KL, H'ng PS, Wong WZ, Lee CL, Khoo PS, Luqman AC, Ashaari Z, Gandaseca S. | R Soc Open Sci | 10.1098/rsos.200847 | 2020 | | |
| In-Silico Characterization of Estrogen Reactivating beta-Glucuronidase Enzyme in GIT Associated Microbiota of Normal Human and Breast Cancer Patients. | Muccee F, Ghazanfar S, Ajmal W, Al-Zahrani M. | Genes (Basel) | 10.3390/genes13091545 | 2022 | | |
| Pathogenicity | Inflammatory Bowel Diseases and Gut Microbiota. | Haneishi Y, Furuya Y, Hasegawa M, Picarelli A, Rossi M, Miyamoto J. | Int J Mol Sci | 10.3390/ijms24043817 | 2023 | |
| Nanoparticle-Based Plasmonic Biosensor for the Unamplified Genomic Detection of Carbapenem-Resistant Bacteria. | Caliskan-Aydogan O, Sharief SA, Alocilja EC. | Diagnostics (Basel) | 10.3390/diagnostics13040656 | 2023 | | |
| Plasmid genomic epidemiology of blaKPC carbapenemase-producing Enterobacterales in Canada, 2010-2021. | Lerminiaux N, Mitchell R, Bartoszko J, Davis I, Ellis C, Fakharuddin K, Hota SS, Katz K, Kibsey P, Leis JA, Longtin Y, McGeer A, Minion J, Mulvey M, Musto S, Rajda E, Smith SW, Srigley JA, Suh KN, Thampi N, Tomlinson J, Wong T, Mataseje L, Canadian Nosocomial Infection Surveillance Program. | Antimicrob Agents Chemother | 10.1128/aac.00860-23 | 2023 | | |
| High clinical impact of rapid susceptibility testing on CHROMID ESBL® medium directly from swabs. | Romo-Ibanez A, Calatrava-Hernandez E, Gutierrez-Soto B, Perez-Ruiz M, Navarro-Mari JM, Gutierrez-Fernandez J. | Ann Transl Med | 10.21037/atm.2020.02.158 | 2020 | | |
| A Bacteriophage Microgel Effectively Treats the Multidrug-Resistant Acinetobacter baumannii Bacterial Infections in Burn Wounds. | Dehari D, Chaudhuri A, Kumar DN, Patil R, Gangwar M, Rastogi S, Kumar D, Nath G, Agrawal AK. | Pharmaceuticals (Basel) | 10.3390/ph16070942 | 2023 | | |
| Enzymology | Metallo-beta-lactamases among Enterobacteriaceae from routine samples in an Italian tertiary-care hospital and long-term care facilities during 2008. | Aschbacher R, Pagani L, Doumith M, Pike R, Woodford N, Spoladore G, Larcher C, Livermore DM. | Clin Microbiol Infect | 10.1111/j.1198-743x.2010.03225.x | 2011 | |
| Pathogenicity | Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Reevaluating Zone Diameter Cutoffs. | Workneh M, Wang R, Kazmi AQ, Chambers KK, Opene BNA, Lewis S, Goodman K, Tamma PD, Carroll KC, Milstone AM, Simner PJ. | J Clin Microbiol | 10.1128/jcm.01127-19 | 2019 | |
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| Pathogenicity | Global Dissemination of blaKPC into Bacterial Species beyond Klebsiella pneumoniae and In Vitro Susceptibility to Ceftazidime-Avibactam and Aztreonam-Avibactam. | Kazmierczak KM, Biedenbach DJ, Hackel M, Rabine S, de Jonge BL, Bouchillon SK, Sahm DF, Bradford PA. | Antimicrob Agents Chemother | 10.1128/aac.00107-16 | 2016 | |
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| Metabolism | Nucleotide sequence of a citrate utilization gene from Citrobacter amalonaticus. | Daimon H, Ishiguro N, Shinagawa M, Sato G | J Bacteriol | 10.1128/jb.171.1.620-623.1989 | 1989 | |
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| Phylogeny | Isolation and characterization of Sporomusa carbonis sp. nov.: a carboxydotrophic hydrogenogen in the genus of Sporomusa isolated from a charcoal-burning pile. | Boer T, Rosenbaum FP, Eysell L, Muller V, Daniel R, Poehlein A. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006677 | 2025 | |
| Phylogeny | Classification of citrobacteria by DNA hybridization: designation of Citrobacter farmeri sp. nov., Citrobacter youngae sp. nov., Citrobacter braakii sp. nov., Citrobacter werkmanii sp. nov., Citrobacter sedlakii sp. nov., and three unnamed Citrobacter genomospecies. | Brenner DJ, Grimont PA, Steigerwalt AG, Fanning GR, Ageron E, Riddle CF. | Int J Syst Bacteriol | 10.1099/00207713-43-4-645 | 1993 | |
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https://doi.org/10.13145/bacdive4323.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data
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