Brenneria salicis (DSM 30166, ATCC 15712, BS 1027)

Name: Brenneria salicis (DSM 30166, ATCC 15712, BS 1027)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4308

Type strain

Strain Designation BS 1027

Culture col. no. DSM 30166 ATCC 15712 BS 1027 EX 2 NCPPB 447 4 more

NCBI tax ID(s) 714314 55214

Special Collections DSMZ CCUG CIP

History DSMZ <- ATCC <- NCPPB <- W.J. Dowson CIP <- 1997, CFBP <- W.J. Dowson: strain BS 1027

Links

Brenneria salicis BS 1027 is an aerobe, Gram-negative, motile plant pathogen that was isolated from willow.

Gram-negative motile rod-shaped aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13662

LMG 2698,ATCC 15712,DSM 30166,ICMP 1587,NCPPB 447,PDDCC 1587,CIP 105204,CFBP 802,CCUG 48855,KACC 10049

@ref 20215

Last LPSN update 2026-05-29 08:25:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Brenneria

Species Brenneria salicis

Full scientific name Brenneria salicis (Day 1924) Hauben et al. 1999

Synonyms (2)

Erwinia salicis
"Bacterium salicis"

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122375	negative	rod-shaped

Multimedia

@ref:	9176
multimedia content:	DSM_30166.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_30166.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9176	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35790	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122375	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9176	positive	growth	26
35790	positive	growth	25
58362	positive	growth	30
122375	positive	growth	5-30
122375	negative	growth	37
122375	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
58362	aerobe
122375	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.032

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122375	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
122375	17234 ChEBI	glucose	+	fermentation
122375	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
122375	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
122375	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
122375	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
122375	17632 ChEBI	nitrate	-	reduction
122375	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
122375	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122375	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122375	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122375	15688 ChEBI	acetoin	+
122375	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122375	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
122375	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122375	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
122375	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122375	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122375	ornithine decarboxylase	-	4.1.1.17
122375	oxidase	-
122375	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
122375	tryptophan deaminase	-
122375	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	suberin monomers biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	vitamin B6 metabolism	100	11 of 11
66794	photosynthesis	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	pyrimidine metabolism	86.67	39 of 45
66794	glutathione metabolism	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	vitamin B12 metabolism	82.35	28 of 34
66794	proline metabolism	81.82	9 of 11
66794	starch degradation	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	lysine metabolism	69.05	29 of 42
66794	degradation of sugar acids	68	17 of 25
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	IAA biosynthesis	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	degradation of pentoses	64.29	18 of 28
66794	metabolism of disaccharids	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	oxidative phosphorylation	60.44	55 of 91
66794	hydrogen production	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	d-mannose degradation	55.56	5 of 9
66794	sulfate reduction	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	pantothenate biosynthesis	50	3 of 6
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ascorbate metabolism	45.45	10 of 22
66794	degradation of hexoses	44.44	8 of 18
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	arachidonate biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	phenol degradation	40	8 of 20
66794	bacilysin biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	degradation of sugar alcohols	37.5	6 of 16
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sulfoquinovose degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	arachidonic acid metabolism	27.78	5 of 18
66794	carnitine metabolism	25	2 of 8
66794	methanogenesis from CO2	25	3 of 12
66794	androgen and estrogen metabolism	25	4 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	nitrate assimilation	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18

Fatty acid profile

Metadata FA analysis

@ref

58362

Fatty acid	Percentage	ECL
C16:1 ω7c	34.3	15.819
C16:0	27.8	16
C18:1 ω7c /12t/9t	12	17.824
C14:0 3OH/C16:1 ISO I	6.8	15.485
C14:0	6.4	14
C12:0	4.1	12
C17:0 CYCLO	3.3	16.888
C18:2 ω6,9c/C18:0 ANTE	1.2	17.724
C18:1 ω9c	0.8	17.769
C15:0	0.8	15
unknown 14.503	0.5	14.503
C18:0	0.4	18
C12:0 3OH	0.4	13.455
C12:0 ALDE ?	0.3	10.915
Unidentified	0.3	13.938
C16:1 ω9c	0.2	15.774
C17:0	0.2	17
C13:0 ISO 2OH	0.2	13.814

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122375	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122375	not determinedn.d.	+	-	-	-	+	-	-	-	-	+/-	+	+	+	-	-	-	+/-	+	-	-	+/-	+	-	+	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122375	not determinedn.d.	+	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
9176	willow
58362	Salix alba caerulae	1957	United Kingdom	GBR	Europe
122375	Salix alba caerulae		United Kingdom	GBR	Europe	1957

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
9176		1	Risk group (German classification) According to TRBA 466
122375		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1293287v1 assembly for Brenneria salicis ATCC 15712 = DSM 30166	contig	GCA_012932875	714314.8	2506783044	714314	79.6
66792	ASM331551v1 assembly for Brenneria salicis ATCC 15712 = DSM 30166	scaffold	GCA_003315515	714314.6	2770939624	714314	60.35
66792	ASM366616v1 assembly for Brenneria salicis ATCC 15712 = DSM 30166	contig	GCA_003666165	714314.7	2839726999	714314	59.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Erwinia salicis 16S ribosomal RNA gene, partial sequence	U80210	1455	714314
20218	Erwinia salicis 16S rRNA gene (strain DSM 30166)	AJ233419	1499	714314
20218	Erwinia salicis LMG 2698 16S ribosomal RNA	Z96097	1471	714314
20218	Brenneria salicis strain NCPPB 447 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	HM196342	398	55214

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1293287v1 assembly for Brenneria salicis ATCC 15712 = DSM 30166
BV-BRC: 714314.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.20	no
125439	gram_stain	BacteriaNetⓘ	negative	88.94	no
125439	motility	BacteriaNetⓘ	yes	72.86	no
125439	spore_formation	BacteriaNetⓘ	no	98.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic analysis of bacteria in the Acute Oak Decline pathobiome.	Doonan J, Denman S, Pachebat JA, McDonald JE.	Microb Genom	10.1099/mgen.0.000240	2019
Enzymology	Specific detection of Pectobacterium carotovorum by loop-mediated isothermal amplification.	Yasuhara-Bell J, Marrero G, De Silva A, Alvarez AM.	Mol Plant Pathol	10.1111/mpp.12378	2016
	aac(6')-Iaq, a novel aminoglycoside acetyltransferase gene identified from an animal isolate Brucella intermedia DW0551.	Lin N, Xu W, Huang D, Liu C, Lu J, Zhu M, Bao Q, Pan W.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1551240	2025
	Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya.	Hugouvieux-Cotte-Pattat N, Royer M, Gueguen E, Le Guen P, Sussmuth RD, Reverchon S, Cociancich S.	Environ Microbiol	10.1111/1462-2920.15889	2022
Metabolism	NorM, an Erwinia amylovora multidrug efflux pump involved in in vitro competition with other epiphytic bacteria.	Burse A, Weingart H, Ullrich MS.	Appl Environ Microbiol	10.1128/aem.70.2.693-703.2004	2004
Phylogeny	Caballeronia ginsengisoli sp. nov., isolated from ginseng cultivating soil.	Quan XT, Liu QZ, Siddiqi MZ, Im WT.	Arch Microbiol	10.1007/s00203-018-1577-0	2019
Phylogeny	Lysinibacillus jejuensis sp. nov., isolated from swinery waste.	Kim JY, Park SH, Oh DC, Kim YJ.	J Microbiol	10.1007/s12275-013-2500-7	2013
	Characterization and Genomic Analysis of Fererhizobium litorale gen. nov., sp. nov., Isolated from the Sandy Sediments of the Sea of Japan Seashore.	Romanenko L, Otstavnykh N, Tanaka N, Kurilenko V, Svetashev V, Tekutyeva L, Mikhailov V, Isaeva M.	Microorganisms	10.3390/microorganisms11102385	2023
Phylogeny	Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea.	Liu ZP, Wang BJ, Dai X, Liu XY, Liu SJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.64587-0	2006
Phylogeny	Paenibacillus rhizosphaerae sp. nov., isolated from the rhizosphere of Cicer arietinum.	Rivas R, Gutierrez C, Abril A, Mateos PF, Martinez-Molina E, Ventosa A, Velazquez E.	Int J Syst Evol Microbiol	10.1099/ijs.0.63513-0	2005

References

#9176	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30166
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35790	; Curators of the CIP;
#58362	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48855
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#122375	Collection of Institut Pasteur ; Curators of the CIP; CIP 105204
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brenneria salicis (DSM 30166, ATCC 15712, BS 1027)

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