Name: Alicyclobacillus contaminans 3-A191
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 429

Type strain:

Species: Alicyclobacillus contaminans

Strain Designation: 3-A191

Culture col. no.: DSM 17975, IAM 15224, JCM 21678, NBRC 103102

Strain history: IAM 15224 <-- K. Goto 3-A191.

NCBI tax ID(s): 1120971 (strain), 392016 (species)

SI-ID 309418

DSM 17975, IAM 15224, JCM 21678, NBRC 103102

Other strains from Alicyclobacillus contaminans

A. contaminans JCM 21682, IAM 15228

Section

Alicyclobacillus contaminans 3-A191 is an aerobe, spore-forming, thermophilic bacterium that was isolated from soil, crop field.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus contaminans**
	Full Scientific Name (LPSN)	Alicyclobacillus contaminans Goto et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31943]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31943]	Cell length	04-05 µm

[Ref.: #31943]	Cell width	0.8-0.9 µm

[Ref.: #31943]	Cell shape	rod-shaped

[Ref.: #31943]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.825

[Ref.: #31943]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7307]

Culture medium

BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)

[Ref.: #7307]

Culture medium growth

[Ref.: #7307]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7307]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7307]	growth	55 °C
[Ref.: #31943]	growth	35-60 °C
[Ref.: #31943]	optimum	50-55 °C
[Ref.: #67770]	growth	50 °C

[Ref.: #7307]	Temperature range	thermophilic
[Ref.: #31943]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

	pH	Kind of pH		pH
[Ref.: #31943]			optimum	4.25
[Ref.: #31943]			growth	4-4.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31943]

Oxygen tolerance

aerobe

[Ref.: #31943]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31943]		NaCl		growth	0-2	%
[Ref.: #31943]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31943]	arabinose ChEBI	+	carbon source
[Ref.: #31943]	cellobiose ChEBI	+	carbon source
[Ref.: #31943]	glycerol ChEBI	+	carbon source
[Ref.: #31943]	lactose ChEBI	+	carbon source
[Ref.: #31943]	maltose ChEBI	+	carbon source
[Ref.: #31943]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31943]	rhamnose ChEBI	+	carbon source
[Ref.: #31943]	salicin ChEBI	+	carbon source
[Ref.: #31943]	sucrose ChEBI	+	carbon source
[Ref.: #31943]	trehalose ChEBI	+	carbon source
[Ref.: #31943]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7307]	Sample type/isolated from	soil, crop field
[Ref.: #7307]	Geographic location (country and/or sea, region)	Fuji city
[Ref.: #7307]	Country	Japan
[Ref.: #7307]	Country ISO 3 Code	JPN
[Ref.: #7307]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a crop field in Fuji City
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shizuoka Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB264026 (>99% sequence identity) for Alicyclobacillus contaminans subclade from Microbeatlas

Aquatic Samples	205
Soil Samples	1229
Animal Samples	166
Plant Samples	420
Total Samples	2020

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7307]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7307]	Alicyclobacillus contaminans gene for 16S ribosomal RNA, partial sequence	AB264026	1520	ENA	392016 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus contaminans DSM 17975	GCA_000429525	scaffold	GenBank	1120971 tax ID
[Ref.: #66792]	Alicyclobacillus contaminans DSM 17975	1120971.3	wgs	PATRIC	1120971 tax ID	*
[Ref.: #66792]	Alicyclobacillus contaminans DSM 17975	2524023143	draft	JGI IMG/M	1120971 tax ID	*

[Ref.: #7307]	GC-content	60.1 mol%
[Ref.: #31943]	GC-content	60.1-60.6 mol%
[Ref.: #67770]	GC-content	60.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alicyclobacillus contaminans DSM 17975 DSM 17975 NCBI: GCA_000429525.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus contaminans DSM 17975 PATRIC: 1120971.3
[Ref.: #69480]	motile	yes	87.57	yes
[Ref.: #69480]	flagellated	no	69.735	no
[Ref.: #69480]	gram-positive	yes	86.538	yes
[Ref.: #69480]	anaerobic	no	97.684	yes
[Ref.: #69480]	aerobic	yes	91.085	yes
[Ref.: #69480]	halophile	no	95.462	no
[Ref.: #69480]	spore-forming	yes	95.074	yes
[Ref.: #69480]	glucose-util	yes	91.777	no
[Ref.: #69480]	thermophile	yes	99.737	yes
[Ref.: #69480]	glucose-ferment	no	88.669	no

Availability in culture collections External links

[Ref.: #7307]

Culture collection no.

DSM 17975, IAM 15224, JCM 21678, NBRC 103102

[Ref.: #70108]

SI-ID 309418

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus tengchongensis sp. nov., a thermo-acidophilic bacterium isolated from hot spring soil.	Kim MG, Lee JC, Park DJ, Li WJ, Kim CJ	J Microbiol	10.1007/s12275-014-3625-z	2014	*
Phylogeny	Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov.	Goto K, Mochida K, Kato Y, Asahara M, Fujita R, An SY, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.64692-0	2007	*

References

#7307

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17975

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31943

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28199 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70108

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309418.1 )

#28199

IJSEM 1276 2007 ( DOI 10.1099/ijs.0.64692-0 , PubMed 17551043 )

* These data were automatically processed and therefore are not curated

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Alicyclobacillus contaminans DSM 17975 DSM 17975

Alicyclobacillus contaminans DSM 17975

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