Ectothiorhodospira shaposhnikovii (DSM 243, KMMGU N1)

Name: Ectothiorhodospira shaposhnikovii (DSM 243, KMMGU N1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4276

Type strain

Culture col. no. DSM 243 KMMGU N1

NCBI tax ID(s) 1054

Special Collections DSMZ

History <- Kondrateva, KMMGU N1

Links

Ectothiorhodospira shaposhnikovii DSM 243 is an anaerobe bacterium of the family Ectothiorhodospiraceae.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47110

DSM 243,VKM B-1525,ATCC BAA-49

@ref 20215

Last LPSN update 2026-02-09 11:18:41

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Ectothiorhodospiraceae

Genus Ectothiorhodospira

Species Ectothiorhodospira shaposhnikovii

Full scientific name Ectothiorhodospira shaposhnikovii Cherni et al. 1969 (Approved Lists 1980)

Synonyms (1)

Ectothiorhodospira vacuolata

BacDive ID	Other strains from **Ectothiorhodospira shaposhnikovii** (1)	Type strain
4277	E. shaposhnikovii BN 9512, DSM 2111, ATCC 43036

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.994
125439	negative	99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
84	PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)		Medium recipe at MediaDive	Name: PFENNIG'S MEDIUM I (DSMZ Medium 28; with strain-specific modifications) Composition: NaCl 10.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Ammonium chloride 0.349999 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
84	positive	growth	25

Physiology and metabolism

Oxygen tolerance

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.044
125439		99.6

Compound production

Compoundcarotenoids

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
84	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1658410v1 assembly for Ectothiorhodospira shaposhnikovii DSM 243	scaffold	GCA_016584105	1054.16	3001299423	1054	42.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
84	Ectothiorhodospira shaposhnikovi 16S ribosomal RNA small subunit	M59151	1483		1054

GC content

GC-content (mol%)62.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ectothiorhodospira shaposhnikovii DSM 243
NCBI: GCA_016584105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	88.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	81.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ectothiorhodospira shaposhnikovii DSM 243
NCBI: GCA_016584105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	yes	64.47	yes
125438	aerobic	aerobicⓘ	no	71.12	yes
125438	spore-forming	spore-formingⓘ	no	91.04	no
125438	thermophilic	thermophileⓘ	no	95.31	no
125438	flagellated	motile2+ⓘ	yes	80.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genomic Comparison, Phylogeny and Taxonomic Reevaluation of the Ectothiorhodospiraceae and Description of Halorhodospiraceae fam. nov. and Halochlorospira gen. nov.	Imhoff JF, Kyndt JA, Meyer TE.	Microorganisms	10.3390/microorganisms10020295	2022
Genetics	Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.	Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC.	Microorganisms	10.3390/microorganisms9010046	2020
	A new in vivo fluorimetric technique to measure growth of adhering phototrophic microorganisms.	Karsten U, Klimant I, Holst G.	Appl Environ Microbiol	10.1128/aem.62.1.237-243.1996	1996
	Arsenite as an Electron Donor for Anoxygenic Photosynthesis: Description of Three Strains of Ectothiorhodospira from Mono Lake, California and Big Soda Lake, Nevada.	Hoeft McCann S, Boren A, Hernandez-Maldonado J, Stoneburner B, Saltikov CW, Stolz JF, Oremland RS	Life (Basel)	10.3390/life7010001	2016

References

#84	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 243
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ectothiorhodospira shaposhnikovii (DSM 243, KMMGU N1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016584105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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