Arhodomonas aquaeolei HA-1 | Type strain | DSM 8974, ATCC 49307, CIP 103913 | BacDiveID:4269

Strain identifier

BacDive ID: 4269

Type strain:

Species: Arhodomonas aquaeolei

Strain Designation: HA-1

Culture col. no.: DSM 8974, ATCC 49307, CIP 103913

Strain history: CIP <- 1993, ATCC <- J.O. Adkins: strain HA-1 <- W. Jenkins

NCBI tax ID(s): 1121016 (strain), 2369 (species)

SI-ID 42415

ATCC 49307, CIP 103913, DSM 8974, NCIMB 13815

Section

Arhodomonas aquaeolei HA-1 is a mesophilic, motile bacterium that was isolated from oil field brine.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Arhodomonas*
	Species	**Arhodomonas aquaeolei**
	Full Scientific Name (LPSN)	Arhodomonas aquaeolei Adkins et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #116425]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #116425]	Cell shape	rod-shaped

[Ref.: #116425]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.39

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM FOR ARHODOMONAS AND MARINOBACTER (DSMZ Medium 941)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 86 - for Arhodomonas aquaeolei

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #116425]

Culture medium

CIP Medium 13

[Ref.: #116425]

Culture medium growth

[Ref.: #116425]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #3447]			growth	37 °C
[Ref.: #34431]			growth	30 °C

[Ref.: #3447]	Temperature range	mesophilic
[Ref.: #34431]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Ability of spore formation

no Confidence in %99.998

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116425]		citrate ChEBI	-	carbon source
[Ref.: #116425]		nitrate ChEBI	+	reduction
[Ref.: #116425]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116425]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #116425]		acetoin ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #116425]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #116425]		catalase	+	1.11.1.6
[Ref.: #116425]		gelatinase	-
[Ref.: #116425]		lysine decarboxylase	-	4.1.1.18
[Ref.: #116425]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #116425]		oxidase	+
[Ref.: #116425]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3447]	Sample type/isolated from	oil field brine

[Ref.: #116425]	Sample type/isolated from	Oil field brine
[Ref.: #116425]	Geographic location (country and/or sea, region)	Oklahoma
[Ref.: #116425]	Country	United States of America
[Ref.: #116425]	Country ISO 3 Code	USA
[Ref.: #116425]	Continent	North America
[Ref.: #116425]	Isolation date	1987
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3447]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116425]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3447]	Arhodomonas aquaeolei strain ATCC 49307 small subunit ribosomal RNA gene, complete sequence	M26631	1485	ENA	2369 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arhodomonas aquaeolei DSM 8974	GCA_000374645	scaffold	GenBank	1121016 tax ID	*
[Ref.: #66792]	Arhodomonas aquaeolei DSM 8974	1121016.3	wgs	PATRIC	1121016 tax ID	*
[Ref.: #66792]	Arhodomonas aquaeolei DSM 8974	2519899679	draft	JGI IMG/M	1121016 tax ID	*

GC-content

67 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arhodomonas aquaeolei DSM 8974 DSM 8974 NCBI: GCA_000374645.1
[Ref.: #69481]	spore-forming	no	84	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arhodomonas aquaeolei DSM 8974 DSM 8974 NCBI: GCA_000374645.1
[Ref.: #69480]	motile	yes	91.29	no
[Ref.: #69480]	flagellated	yes	73.255	no
[Ref.: #69480]	gram-positive	no	98.548	no
[Ref.: #69480]	anaerobic	no	92.249	no
[Ref.: #69480]	aerobic	yes	65.203	no
[Ref.: #69480]	halophile	yes	81.644	no
[Ref.: #69480]	spore-forming	no	94.088	no
[Ref.: #69480]	glucose-util	yes	72.554	no
[Ref.: #69480]	thermophile	no	95.774	yes
[Ref.: #69480]	glucose-ferment	no	88.127	no

Availability in culture collections External links

Culture collection no.

DSM 8974, ATCC 49307, CIP 103913

SI-ID 42415

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spiribacter roseus sp. nov., a moderately halophilic species of the genus Spiribacter from salterns.	Leon MJ, Vera-Gargallo B, Sanchez-Porro C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001338	2016	*
Phylogeny	Spiribacter curvatus sp. nov., a moderately halophilic bacterium isolated from a saltern.	Leon MJ, Rodriguez-Olmos A, Sanchez-Porro C, Lopez-Perez M, Rodriguez-Valera F, Soliveri J, Ventosa A, Copa-Patino JL	Int J Syst Evol Microbiol	10.1099/ijsem.0.000621	2015	*
Genetics	Arhodomonas sp. strain Seminole and its genetic potential to degrade aromatic compounds under high-salinity conditions.	Dalvi S, Nicholson C, Najar F, Roe BA, Canaan P, Hartson SD, Fathepure BZ	Appl Environ Microbiol	10.1128/AEM.01509-14	2014	*
Phylogeny	Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine.	Adkins JP, Madigan MT, Mandelco L, Woese CR, Tanner RS	Int J Syst Bacteriol	10.1099/00207713-43-3-514	1993	*

References

#3447

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8974

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34431 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73763

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42415.1 )

#116425 Collection of Institut Pasteur ; Curators of the CIP; CIP 103913
* These data were automatically processed and therefore are not curated

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