Name: Desulfuromonas svalbardensis 112
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4238

Type strain:

Species: Desulfuromonas svalbardensis

Strain Designation: 112

Culture col. no.: DSM 16958, JCM 12927

Strain history: V. Vandieken 112.

NCBI tax ID(s): 304413 (species)

SI-ID 291126

DSM 16958, JCM 12927

Section

Desulfuromonas svalbardensis 112 is an anaerobe, chemoorganotroph, psychrophilic bacterium that was isolated from marine surface sediment.

Gram-negative
motile
rod-shaped
anaerobe
chemoorganotroph
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Desulfuromonadaceae*
	Genus	*Desulfuromonas*
	Species	**Desulfuromonas svalbardensis**
	Full Scientific Name (LPSN)	Desulfuromonas svalbardensis Vandieken et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #23229]	Gram stain	negative

[Ref.: #23229]	Cell length	2.5-3.0 µm

[Ref.: #23229]	Cell width	0.7 µm

[Ref.: #23229]	Cell shape	rod-shaped

[Ref.: #23229]	Motility	yes

[Ref.: #23229]	Flagellum arrangement	peritrichous

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6669]

Culture medium

DESULFUROMUSA FERRIREDUCENS MEDIUM (DSMZ Medium 1041)

[Ref.: #6669]

Culture medium growth

[Ref.: #6669]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6669]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6669]	growth	15 °C
[Ref.: #23229]	growth	-2.0-20 °C
[Ref.: #23229]	optimum	14 °C
[Ref.: #67770]	growth	14 °C

[Ref.: #6669]	Temperature range	psychrophilic
[Ref.: #23229]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #23229]			optimum	7.3
[Ref.: #23229]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6669]	Oxygen tolerance	anaerobe
[Ref.: #23229]	Oxygen tolerance	anaerobe

[Ref.: #23229]

Nutrition type

chemoorganotroph

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23229]	acetate ChEBI	+	growth
[Ref.: #23229]	acetate ChEBI	+	oxidation
[Ref.: #23229]	biotin ChEBI	+	required for growth
[Ref.: #23229]	butanol ChEBI	+	growth
[Ref.: #23229]	butanol ChEBI	+	oxidation
[Ref.: #23229]	choline ChEBI	+	growth
[Ref.: #23229]	choline ChEBI	+	oxidation
[Ref.: #23229]	elemental sulfur ChEBI	+	electron acceptor
[Ref.: #23229]	ethanol ChEBI	+	growth
[Ref.: #23229]	ethanol ChEBI	+	oxidation
[Ref.: #23229]	fumarate ChEBI	+	electron acceptor
[Ref.: #23229]	manganese dioxide	+	electron acceptor
[Ref.: #23229]	propanol ChEBI	+	growth
[Ref.: #23229]	propanol ChEBI	+	oxidation
[Ref.: #23229]	propionate ChEBI	+	growth
[Ref.: #23229]	propionate ChEBI	+	oxidation
[Ref.: #23229]	pyruvate ChEBI	+	growth
[Ref.: #23229]	pyruvate ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6669]	Sample type/isolated from	marine surface sediment
[Ref.: #6669]	Geographic location (country and/or sea, region)	Svalbard
[Ref.: #6669]	Country	Norway
[Ref.: #6669]	Country ISO 3 Code	NOR
[Ref.: #6669]	Continent	Europe

[Ref.: #23229]	Sample type/isolated from	permanently cold fjord sediment
[Ref.: #23229]	Geographic location (country and/or sea, region)	west coast of Svalbard

[Ref.: #67770]	Sample type/isolated from	Arctic fjord sediment at the west coast of Svalbard
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY835388 (>99% sequence identity) for Desulfuromonas svalbardensis subclade from Microbeatlas

Aquatic Samples	324
Soil Samples	18
Animal Samples	4
Plant Samples
Total Samples	346

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6669]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6669]	Desulfuromonas svalbardensis strain 112 16S ribosomal RNA gene, partial sequence	AY835388	1516	ENA	304413 tax ID

[Ref.: #6669]	GC-content	52.3 mol%
[Ref.: #23229]	GC-content	50.1 mol%

Availability in culture collections External links

[Ref.: #6669]

Culture collection no.

DSM 16958, JCM 12927

[Ref.: #73735]

SI-ID 291126

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard.	Vandieken V, Mussmann M, Niemann H, Jorgensen BB	Int J Syst Evol Microbiol	10.1099/ijs.0.63639-0	2006	*

References

#6669

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16958

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23229

Verona Vandieken, Marc Mußmann, Helge Niemann, Bo Barker Jorgensen: Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard. IJSEM 56: 1133 - 1139 2006 ( DOI 10.1099/ijs.0.63639-0 , PubMed 16627667 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73735

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291126.1 )

* These data were automatically processed and therefore are not curated

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