Name: Pelobacter seleniigenes KM
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4225

Type strain:

Species: Pelobacter seleniigenes

Strain Designation: KM

Culture col. no.: DSM 18267, ATCC BAA-1388, CIP 109818

Strain history: <- M. M. Häggblom, Rutgers, State Univ. New Jersey, New Brunswick, USA; KM <- P. Narasingarao {2005}

NCBI tax ID(s): 1122946 (strain), 407188 (species)

SI-ID 405506

DSM 18267

Section

Pelobacter seleniigenes KM is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater wetland system.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Desulfuromonadaceae*
	Genus	*Pelobacter*
	Species	**Pelobacter seleniigenes**
	Full Scientific Name (LPSN)	Pelobacter seleniigenes Narasingarao and Häggblom 2007

Synonym

Seleniibacterium seleniigenes

Information on morphological and physiological properties Morphology

[Ref.: #32113]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #32113]	Cell length	2 µm

[Ref.: #32113]	Cell width	0.5 µm

[Ref.: #32113]	Cell shape	rod-shaped

[Ref.: #32113]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.525

[Ref.: #32113]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7466]

Culture medium

MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)

[Ref.: #7466]

Culture medium growth

[Ref.: #7466]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7466]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7466]			growth	28 °C

[Ref.: #7466]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7466]	Oxygen tolerance	anaerobe
[Ref.: #32113]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.648

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32113]		NaCl		growth	0.1-3.5	%
[Ref.: #32113]		NaCl		optimum	1.8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32113]	acetate ChEBI	+	carbon source
[Ref.: #32113]	citrate ChEBI	+	carbon source
[Ref.: #32113]	lactate ChEBI	+	carbon source
[Ref.: #32113]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7466]	Sample type/isolated from	freshwater wetland system
[Ref.: #7466]	Geographic location (country and/or sea, region)	New Jersey, Kearny
[Ref.: #7466]	Country	USA
[Ref.: #7466]	Country ISO 3 Code	USA
[Ref.: #7466]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ991964 (>99% sequence identity) for Pelobacter seleniigenes subclade from Microbeatlas

Aquatic Samples	193
Soil Samples	18
Animal Samples	3
Plant Samples
Total Samples	214

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7466]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7466]	Pelobacter seleniigenes strain KM 16S ribosomal RNA gene, partial sequence	DQ991964	1484	ENA	407188 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pelobacter seleniigenes DSM 18267	GCA_000711225	contig	GenBank	1122946 tax ID	*
[Ref.: #66792]	Pelobacter seleniigenes DSM 18267	1122946.3	wgs	PATRIC	1122946 tax ID	*
[Ref.: #66792]	Pelobacter seleniigenes DSM 18267	2571042913	draft	JGI IMG/M	1122946 tax ID	*

[Ref.: #7466]	GC-content	54.1 mol%
[Ref.: #32113]	GC-content	53-55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pelobacter seleniigenes DSM 18267 PATRIC: 1122946.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pelobacter seleniigenes DSM 18267 PATRIC: 1122946.3
[Ref.: #69480]	motile	yes	92.663	yes
[Ref.: #69480]	flagellated	yes	53.984	no
[Ref.: #69480]	gram-positive	no	98.587	yes
[Ref.: #69480]	anaerobic	yes	96.114	yes
[Ref.: #69480]	aerobic	no	85.271	no
[Ref.: #69480]	halophile	no	84.326	no
[Ref.: #69480]	spore-forming	no	91.291	no
[Ref.: #69480]	glucose-util	yes	69.023	no
[Ref.: #69480]	thermophile	no	99.108	no
[Ref.: #69480]	glucose-ferment	no	82.911	no

Availability in culture collections External links

[Ref.: #7466]

Culture collection no.

DSM 18267, ATCC BAA-1388, CIP 109818

[Ref.: #73725]

SI-ID 405506

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Pelobacter seleniigenes sp. nov., a selenate-respiring bacterium.	Narasingarao P, Haggblom MM	Int J Syst Evol Microbiol	10.1099/ijs.0.64980-0	2007	*

References

#7466

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18267

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32113

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28358 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73725

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405506.1 )

#28358

IJSEM 1937 2007 ( DOI 10.1099/ijs.0.64980-0 , PubMed 17766850 )

* These data were automatically processed and therefore are not curated

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Pelobacter seleniigenes DSM 18267

Pelobacter seleniigenes DSM 18267

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