Name: Aeropyrum camini SY1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4196

Type strain:

Species: Aeropyrum camini

Strain Designation: SY1

Culture col. no.: DSM 16960, ATCC BAA-758, JCM 12091

Strain history: S. Nakagawa SY1.

NCBI tax ID(s): 1198449 (strain), 229980 (species)

SI-ID 131409

ATCC BAA-758, JCM 12091, DSM 16960

Section

Aeropyrum camini SY1 is an aerobe, heterotroph, hyperthermophilic archaeon that forms irregular colonies and was isolated from deep-sea hydrothermal vent chimney, 1385 m depth.

coccus-shaped
colony-forming
Gram-negative
motile
aerobe
heterotroph
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	*Desulfurococcaceae*
	Genus	*Aeropyrum*
	Species	**Aeropyrum camini**
	Full Scientific Name (LPSN)	Aeropyrum camini Nakagawa et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #23223]	Gram stain	negative

[Ref.: #23223]	Cell length	1.2-2.1 µm

[Ref.: #23223]	Cell shape	coccus-shaped

[Ref.: #23223]	Motility	yes

[Ref.: #23223]

Colony shape

irregular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6671]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6671]

Culture medium growth

[Ref.: #6671]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6671]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6671]	growth	85 °C
[Ref.: #23223]	growth	70-97 °C
[Ref.: #23223]	optimum	85 °C
[Ref.: #67770]	growth	85 °C

[Ref.: #6671]	Temperature range	hyperthermophilic
[Ref.: #23223]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic

	pH	Kind of pH		pH
[Ref.: #23223]			optimum	8.0
[Ref.: #23223]			growth	6.5-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23223]

Oxygen tolerance

aerobe

[Ref.: #23223]

Nutrition type

heterotroph

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23223]	tryptone	+	carbon source
[Ref.: #23223]	tryptone	+	energy source
[Ref.: #23223]	yeast extract	+	carbon source
[Ref.: #23223]	yeast extract	+	energy source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6671]	Sample type/isolated from	deep-sea hydrothermal vent chimney, 1385 m depth
[Ref.: #6671]	Geographic location (country and/or sea, region)	Pacific Ocean, Izu-Bonin Arc, Suiyo Seamount
[Ref.: #6671]	Country	Japan
[Ref.: #6671]	Country ISO 3 Code	JPN
[Ref.: #6671]	Continent	Asia

[Ref.: #23223]	Sample type/isolated from	deep-sea hydrothermal vent chimney
[Ref.: #23223]	Geographic location (country and/or sea, region)	Izu-Bonin Arc
[Ref.: #23223]	Country	Japan
[Ref.: #23223]	Country ISO 3 Code	JPN
[Ref.: #23223]	Continent	Asia
[Ref.: #23223]	Geographic location	28.5714°/140.6440°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal vent chimney
[Ref.: #67770]	Geographic location (country and/or sea, region)	Suiyo Seamount in Izu-Bonin Arc
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6671]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6671]	Aeropyrum camini gene for 16S rRNA, partial sequence	AB109559	1562	ENA	1198449 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeropyrum camini SY1 = JCM 12091	GCA_001316065	contig	GenBank	1198449 tax ID
[Ref.: #66792]	Aeropyrum camini SY1 = JCM 12091	GCA_000591035	complete	GenBank	1198449 tax ID	*
[Ref.: #66792]	Aeropyrum camini SY1, JCM 12091	2554235461	complete	JGI IMG/M	1198449 tax ID	*
[Ref.: #66792]	Aeropyrum camini SY1, JCM 12091	2675903482	draft	JGI IMG/M	1198449 tax ID	*
[Ref.: #66792]	Aeropyrum camini SY1 = JCM 12091	1198449.6	complete	PATRIC	1198449 tax ID	*
[Ref.: #66792]	Aeropyrum camini SY1 = JCM 12091	1198449.12	wgs	PATRIC	1198449 tax ID	*

[Ref.: #6671]	GC-content	54.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23223]	GC-content	54.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeropyrum camini SY1 = JCM 12091 SY1 NCBI: GCA_000591035.1
[Ref.: #69480]	motile	no	56.213	yes
[Ref.: #69480]	flagellated	no	94.192	no
[Ref.: #69480]	gram-positive	no	96.009	yes
[Ref.: #69480]	anaerobic	yes	69.643	no
[Ref.: #69480]	halophile	no	58.381	no
[Ref.: #69480]	spore-forming	no	96.788	no
[Ref.: #69480]	glucose-util	yes	80.188	no
[Ref.: #69480]	aerobic	no	66.679	yes
[Ref.: #69480]	thermophile	yes	99.999	no
[Ref.: #69480]	glucose-ferment	no	79.392	no

Availability in culture collections External links

[Ref.: #6671]

Culture collection no.

DSM 16960, ATCC BAA-758, JCM 12091

[Ref.: #73696]

SI-ID 131409

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney.	Nakagawa S, Takai K, Horikoshi K, Sako Y	Int J Syst Evol Microbiol	10.1099/ijs.0.02826-0	2004	*

References

#6671

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16960

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23223

Satoshi Nakagawa, Ken Takai, Koki Horikoshi, Yoshihiko Sako: Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. IJSEM 54: 329 - 335 2004 ( DOI 10.1099/ijs.0.02826-0 , PubMed 15023940 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73696

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131409.1 )

* These data were automatically processed and therefore are not curated

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Aeropyrum camini SY1 = JCM 12091 SY1

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