Name: Humidesulfovibrio idahonensis DSM 15450
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4168

Type strain:

Species: Humidesulfovibrio idahonensis

Culture col. no.: DSM 15450, JCM 14124, CY 1

Strain history: DSM 15450 <-- R. F. Rosenzweig CY1.

NCBI tax ID(s): 1121452 (strain), 575978 (species)

SI-ID 403762

DSM 15450

Other strains from Humidesulfovibrio idahonensis

H. idahonensis DSM 15451, CY 2

Section

Humidesulfovibrio idahonensis DSM 15450 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater sediment.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Humidesulfovibrio*
	Species	**Humidesulfovibrio idahonensis**
	Full Scientific Name (LPSN)	Humidesulfovibrio idahonensis (Sass et al. 2009) Waite et al. 2020

Synonym

Desulfovibrio idahonensis

Information on morphological and physiological properties Morphology

[Ref.: #23216]	Gram stain	negative

[Ref.: #23216]	Cell length	1.0-3.3 µm

[Ref.: #23216]	Cell width	0.4-0.6 µm

[Ref.: #23216]	Cell shape	rod-shaped

[Ref.: #23216]	Motility	yes

[Ref.: #23216]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5809]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #5809]

Culture medium growth

[Ref.: #5809]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5809]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5809]	growth	30 °C
[Ref.: #23216]	growth	10-37 °C
[Ref.: #23216]	optimum	28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #5809]	Temperature range	mesophilic
[Ref.: #23216]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23216]			optimum	6.5
[Ref.: #23216]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5809]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23216]		NaCl		growth	0-0.75	%

[Ref.: #67770]

Observation

quinones: MK-6(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23216]	1,2-propandiol ChEBI	-	carbon source
[Ref.: #23216]	1,2-propandiol ChEBI	-	electron donor
[Ref.: #23216]	acetate ChEBI	-	carbon source
[Ref.: #23216]	acetate ChEBI	-	electron donor
[Ref.: #23216]	amino acid ChEBI	-	carbon source
[Ref.: #23216]	amino acid ChEBI	-	electron donor
[Ref.: #23216]	benzoate ChEBI	-	carbon source
[Ref.: #23216]	benzoate ChEBI	-	electron donor
[Ref.: #23216]	butanol ChEBI	-	carbon source
[Ref.: #23216]	butanol ChEBI	-	electron donor
[Ref.: #23216]	butyrate ChEBI	-	carbon source
[Ref.: #23216]	butyrate ChEBI	-	electron donor
[Ref.: #23216]	choline ChEBI	-	carbon source
[Ref.: #23216]	choline ChEBI	-	electron donor
[Ref.: #23216]	ethanolamine ChEBI	-	carbon source
[Ref.: #23216]	ethanolamine ChEBI	-	electron donor
[Ref.: #23216]	ethylene glycol ChEBI	-	carbon source
[Ref.: #23216]	ethylene glycol ChEBI	-	electron donor
[Ref.: #23216]	glycerol 3-phosphate ChEBI	-	carbon source
[Ref.: #23216]	glycerol 3-phosphate ChEBI	-	electron donor
[Ref.: #23216]	methanol ChEBI	-	carbon source
[Ref.: #23216]	methanol ChEBI	-	electron donor
[Ref.: #23216]	propanol ChEBI	-	carbon source
[Ref.: #23216]	propanol ChEBI	-	electron donor
[Ref.: #23216]	propionate ChEBI	-	carbon source
[Ref.: #23216]	propionate ChEBI	-	electron donor
[Ref.: #23216]	yeast extract	-	carbon source
[Ref.: #23216]	yeast extract	-	electron donor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5809]	Sample type/isolated from	freshwater sediment
[Ref.: #5809]	Geographic location (country and/or sea, region)	Idaho, Lake Coeur d’Alene
[Ref.: #5809]	Country	USA
[Ref.: #5809]	Country ISO 3 Code	USA
[Ref.: #5809]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Heavy-metal-contaminated sediments of Lake Coeur d'Alene
[Ref.: #67770]	Geographic location (country and/or sea, region)	ID
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5809]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5809]	Desulfovibrio idahonensis 16S rRNA gene, type strain CY1	AJ582755	1529	ENA	575978 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovibrio idahonensis DSM 15450	2574180452	draft	JGI IMG/M	1121452 tax ID	*

[Ref.: #5809]

GC-content

63.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5809]

Culture collection no.

DSM 15450, JCM 14124, CY 1

[Ref.: #73670]

SI-ID 403762

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio arcticus sp. nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg.	Pecheritsyna SA, Rivkina EM, Akimov VN, Shcherbakova VA	Int J Syst Evol Microbiol	10.1099/ijs.0.021451-0	2011	*
Phylogeny	Desulfovibrio idahonensis sp. nov., sulfate-reducing bacteria isolated from a metal(loid)-contaminated freshwater sediment.	Sass H, Ramamoorthy S, Yarwood C, Langner H, Schumann P, Kroppenstedt RM, Spring S, Rosenzweig RF	Int J Syst Evol Microbiol	10.1099/ijs.0.016709-0	2009	*

References

#5809

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15450

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23216

H. Sass, S. Ramamoorthy, C. Yarwood, H. Langner, P. Schumann, R. M. Kroppenstedt, S. Spring, R. F. Rosenzweig: Desulfovibrio idahonensis sp. nov., sulfate-reducing bacteria isolated from a metal(loid)-contaminated freshwater sediment. IJSEM 59: 2208 - 2214 2009 ( DOI 10.1099/ijs.0.016709-0 , PubMed 19605721 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#73670

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403762.1 )

* These data were automatically processed and therefore are not curated

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