Pseudodesulfovibrio portus (DSM 19338, JCM 14722, MSL 79)

Name: Pseudodesulfovibrio portus (DSM 19338, JCM 14722, MSL 79)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4166

Type strain

Culture col. no. DSM 19338 JCM 14722 MSL 79

NCBI tax ID(s) 231439

Special Collections DSMZ JCM

History DSMZ <- A. Ueki, Yamagata Univ., Tsuruoka, Japan; MSL79 <- A. Ueki; {2000} JCM <-- A. Ueki MSL79.

Links

Pseudodesulfovibrio portus DSM 19338 is an anaerobe bacterium that was isolated from estuarine sediment.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399630

JCM 14722,DSM 19338

@ref 20215

Last LPSN update 2026-05-29 08:25:52

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Pseudodesulfovibrio

Species Pseudodesulfovibrio portus

Full scientific name Pseudodesulfovibrio portus (Suzuki et al. 2010) Cao et al. 2016

Synonyms (1)

Desulfovibrio portus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.591

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8055	DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)		Medium recipe at MediaDive	Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8055	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8055	anaerobe
125439	facultative anaerobe	95.379

Spore formation

@ref	Spore formation	Confidence
125439		99.227

Observation

67770

Observationquinones: MK-6(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8055	estuarine sediment	Yamagata	Japan	JPN	Asia
67770	Estuarine sediment in Sakata Harbor		Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8055	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2600037v1 assembly for Pseudodesulfovibrio portus JCM 14722	complete	GCA_026000375	231439.3	8117775797	231439	99.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8055	Pseudodesulfovibrio portus MSL79 gene for 16S rRNA, partial sequence	AB110541	1425		231439

GC content

@ref	GC-content (mol%)	Method
8055	62.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2600037v1 assembly for Pseudodesulfovibrio portus JCM 14722
NCBI: GCA_026000375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.38	no
125439	gram_stain	BacteriaNetⓘ	negative	93.59	no
125439	motility	BacteriaNetⓘ	yes	68.06	no
125439	spore_formation	BacteriaNetⓘ	no	99.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722(T).	Kataoka T, Kondo R	Microbiol Resour Announc	10.1128/mra.00947-22	2022
Phylogeny	Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio.	Cao J, Gayet N, Zeng X, Shao Z, Jebbar M, Alain K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001286	2016
Phylogeny	Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class Deltaproteobacteria isolated from an estuarine sediment.	Suzuki D, Ueki A, Amaishi A, Ueki K	J Gen Appl Microbiol	10.2323/jgam.55.125	2009

References

#8055	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19338
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudodesulfovibrio portus (DSM 19338, JCM 14722, MSL 79)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_026000375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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