Name: Pseudodesulfovibrio portus DSM 19338
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4166

Type strain:

Species: Pseudodesulfovibrio portus

Culture col. no.: DSM 19338, JCM 14722, MSL 79

Strain history: A. Ueki MSL79.

NCBI tax ID(s): 231439 (species)

SI-ID 399630

DSM 19338

Section

Pseudodesulfovibrio portus DSM 19338 is an anaerobe, mesophilic bacterium that was isolated from estuarine sediment.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Pseudodesulfovibrio*
	Species	**Pseudodesulfovibrio portus**
	Full Scientific Name (LPSN)	Pseudodesulfovibrio portus (Suzuki et al. 2010) Cao et al. 2016

Synonym

Desulfovibrio portus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8055]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #8055]

Culture medium growth

[Ref.: #8055]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8055]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8055]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #8055]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8055]

Oxygen tolerance

anaerobe

[Ref.: #67770]

Observation

quinones: MK-6(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8055]	Sample type/isolated from	estuarine sediment
[Ref.: #8055]	Geographic location (country and/or sea, region)	Yamagata
[Ref.: #8055]	Country	Japan
[Ref.: #8055]	Country ISO 3 Code	JPN
[Ref.: #8055]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Estuarine sediment in Sakata Harbor
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8055]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8055]	Desulfovibrio portus gene for 16S ribosomal RNA, partial sequence	AB110541	1425	ENA	231439 tax ID

[Ref.: #8055]

GC-content

62.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8055]

Culture collection no.

DSM 19338, JCM 14722, MSL 79

[Ref.: #73668]

SI-ID 399630

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio.	Cao J, Gayet N, Zeng X, Shao Z, Jebbar M, Alain K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001286	2016	*
Phylogeny	Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class Deltaproteobacteria isolated from an estuarine sediment.	Suzuki D, Ueki A, Amaishi A, Ueki K	J Gen Appl Microbiol	10.2323/jgam.55.125	2009	*
Genetics	Genome Sequence of the Sulfate-Reducing Bacterium Pseudodesulfovibrio portus JCM 14722(T).	Kataoka T, Kondo R	Microbiol Resour Announc	10.1128/mra.00947-22	2022	*

References

#8055

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19338

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#73668

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399630.1 )

* These data were automatically processed and therefore are not curated

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