Name: Maridesulfovibrio frigidus 18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4157

Type strain:

Species: Maridesulfovibrio frigidus

Strain Designation: 18

Culture col. no.: DSM 17176, JCM 12924

Strain history: V. Vandieken 18.

NCBI tax ID(s): 1121447 (strain), 340956 (species)

SI-ID 290970

DSM 17176, JCM 12924

Section

Maridesulfovibrio frigidus 18 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from marine surface sediment.

Gram-negative
motile
rod-shaped
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Maridesulfovibrio*
	Species	**Maridesulfovibrio frigidus**
	Full Scientific Name (LPSN)	Maridesulfovibrio frigidus (Vandieken et al. 2006) Waite et al. 2020

Synonym

Desulfovibrio frigidus

Information on morphological and physiological properties Morphology

[Ref.: #31689]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.981

[Ref.: #31689]	Cell length	02-05 µm

[Ref.: #31689]	Cell width	0.7 µm

[Ref.: #31689]	Cell shape	rod-shaped

[Ref.: #31689]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.149

[Ref.: #31689]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6711]

Culture medium

MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)

[Ref.: #6711]

Culture medium growth

[Ref.: #6711]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6711]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6711]	growth	20 °C
[Ref.: #31689]	optimum	20-23 °C
[Ref.: #67770]	growth	20 °C

[Ref.: #6711]	Temperature range	psychrophilic
[Ref.: #31689]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31689]			optimum	6.9-7.5
[Ref.: #31689]			growth	7.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6711]	Oxygen tolerance	anaerobe
[Ref.: #31689]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.558

[Ref.: #31689]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31689]		NaCl		growth	2-3.5	%
[Ref.: #31689]		NaCl		optimum	02-03	%

[Ref.: #31689]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31689]		alanine ChEBI	+	carbon source
[Ref.: #31689]		ethanol ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6711]	Sample type/isolated from	marine surface sediment
[Ref.: #6711]	Geographic location (country and/or sea, region)	Svalbard
[Ref.: #6711]	Country	Norway
[Ref.: #6711]	Country ISO 3 Code	NOR
[Ref.: #6711]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Arctic fjord sediment at the west coast of Svalbard
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ148943 (>99% sequence identity) for Maridesulfovibrio frigidus subclade from Microbeatlas

Aquatic Samples	706
Soil Samples	5
Animal Samples	65
Plant Samples	21
Total Samples	797

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6711]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6711]	Desulfovibrio frigidus strain 18 16S ribosomal RNA gene, partial sequence	DQ148943	1514	ENA	340956 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Maridesulfovibrio frigidus DSM 17176	GCA_000711735	scaffold	GenBank	1121447 tax ID
[Ref.: #66792]	Desulfovibrio frigidus DSM 17176	1121447.3	wgs	PATRIC	1121447 tax ID	*
[Ref.: #66792]	Desulfovibrio frigidus DSM 17176	2565956520	draft	JGI IMG/M	1121447 tax ID	*

[Ref.: #6711]

GC-content

43.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maridesulfovibrio frigidus DSM 17176 DSM 17176 NCBI: GCA_000711735.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio frigidus DSM 17176 PATRIC: 1121447.3
[Ref.: #69480]	motile	yes	91.593	yes
[Ref.: #69480]	flagellated	yes	67.537	no
[Ref.: #69480]	gram-positive	no	99.203	yes
[Ref.: #69480]	anaerobic	yes	98.577	yes
[Ref.: #69480]	aerobic	no	97.042	yes
[Ref.: #69480]	halophile	no	64.532	no
[Ref.: #69480]	spore-forming	no	92.74	yes
[Ref.: #69480]	thermophile	no	99.523	yes
[Ref.: #69480]	glucose-util	no	56.13	no
[Ref.: #69480]	glucose-ferment	no	78.043	no

Availability in culture collections External links

[Ref.: #6711]

Culture collection no.

DSM 17176, JCM 12924

[Ref.: #73658]

SI-ID 290970

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III).	Vandieken V, Knoblauch C, Jorgensen BB	Int J Syst Evol Microbiol	10.1099/ijs.0.64057-0	2006	*

References

#6711

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17176

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31689

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27966 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73658

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290970.1 )

#27966

IJSEM 681 2006 ( DOI 10.1099/ijs.0.64057-0 , PubMed 16585676 )

* These data were automatically processed and therefore are not curated

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Maridesulfovibrio frigidus DSM 17176 DSM 17176

Desulfovibrio frigidus DSM 17176

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