Name: Solidesulfovibrio aerotolerans DvO5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4152

Type strain:

Species: Solidesulfovibrio aerotolerans

Strain Designation: DvO5

Culture col. no.: DSM 16695, JCM 12613

Strain history: K. Ingvorsen DvO5.

NCBI tax ID(s): 295255 (species)

SI-ID 297632

DSM 16695, JCM 12613

Special Collections

DSMZ
JCM

Section

Solidesulfovibrio aerotolerans DvO5 is an anaerobe, Gram-negative bacterium that was isolated from Activated sludge.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Solidesulfovibrio*
	Species	**Solidesulfovibrio aerotolerans**
	Full Scientific Name (LPSN)	Solidesulfovibrio aerotolerans (Mogensen et al. 2009) Waite et al. 2020

Synonym

Desulfovibrio aerotolerans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6570]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #6570]

Culture medium growth

[Ref.: #6570]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6570]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6570]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6570]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %92

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6570]	Sample type/isolated from	Activated sludge
[Ref.: #6570]	Country	Denmark
[Ref.: #6570]	Country ISO 3 Code	DNK
[Ref.: #6570]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Activated sludge from a wastewater treatment plant in Odder
[Ref.: #67770]	Country	Denmark
[Ref.: #67770]	Country ISO 3 Code	DNK
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6570]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6570]	Desulfovibrio aerotolerans strain DvO5 16S ribosomal RNA gene, partial sequence	AY746987	1366	GenBank ENA	295255 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Solidesulfovibrio aerotolerans DSM 16695	GCA_009856865	contig	GenBank ENA	295255 tax ID	*
[Ref.: #66792]	Desulfovibrio aerotolerans strain DSM 16695	295255.3	wgs	PATRIC	295255 tax ID	*

[Ref.: #67770]

GC-content

57.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio aerotolerans strain DSM 16695 PATRIC: 295255.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	92	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio aerotolerans strain DSM 16695 PATRIC: 295255.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	85.484	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	81.888	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	76.088	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	83.106	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.367	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	69.999	no

Availability in culture collections External links

[Ref.: #6570]

Culture collection no.

DSM 16695, JCM 12613

[Ref.: #73653]

SI-ID 297632

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sulfate-reducing bacteria mediate thionation of diphenylarsinic acid under anaerobic conditions.	Guan L, Shiiya A, Hisatomi S, Fujii K, Nonaka M, Harada N	Biodegradation	10.1007/s10532-014-9713-2	2014	*
Phylogeny	Desulfovibrio aerotolerans sp. nov., an oxygen tolerant sulphate-reducing bacterium isolated from activated sludge.	Mogensen GL, Kjeldsen KU, Ingvorsen K	Anaerobe	10.1016/j.anaerobe.2005.04.002	2005	*

References

#6570

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16695

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73653

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297632.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio aerotolerans strain DSM 16695

Desulfovibrio aerotolerans strain DSM 16695

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