Maridesulfovibrio hydrothermalis (DSM 14728, CIP 107303, AM13)

Name: Maridesulfovibrio hydrothermalis (DSM 14728, CIP 107303, AM13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4142

Type strain

Strain Designation AM13, AM13cf, H7

Culture col. no. DSM 14728 CIP 107303 AM13 AM13cf H7

NCBI tax ID(s) 191026

Special Collections DSMZ CIP

History DSMZ <- J.-L. Garcia, Universités de Provence et de la Méditerranée, ESIL, Marseille, France; AM13cf <- D. Alazard {2000} CIP <- 2001, JL Garcia, IRD, Marseille, France: strain H7 <- D. Alazard: strain AM13

Links

Maridesulfovibrio hydrothermalis AM13 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from deep-sea hydrothermal chimney wall-2600 m.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100629

CIP 107303,DSM 14728

@ref 20215

Last LPSN update 2026-05-29 08:25:52

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Maridesulfovibrio

Species Maridesulfovibrio hydrothermalis

Full scientific name Maridesulfovibrio hydrothermalis (Alazard et al. 2003) Waite et al. 2020

Synonyms (1)

Desulfovibrio hydrothermalis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120012	negative	rod-shaped
125438	negative		95.962
125439	negative		99.137

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5513	DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)	Medium recipe at MediaDive	Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c; with strain-specific modifications) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na-acetate 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
35429	MEDIUM 401 - for Desulfovibrio hydrothermalis		Distilled water make up to (1000.000 ml);Sodium chloride (25.000 g);Potassium chloride (0.200 g);Magnesium chloride hexahydrate (3.000 g);Calcium chloride dihydrate(0.100 g);Sodium sulphate (3.160 g);Yeast extract (0.500 g);Potassium di-hydrogen phosphate
120012	CIP Medium 401	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5513	positive	growth	35
35429	positive	growth	30
120012	positive	growth	30

Physiology and metabolism

Oxygen tolerance

5513

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.971

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Country	Isolation date	Geographic location
5513	deep-sea hydrothermal chimney wall-2600 m			Pacific Ocean, 13°N East Pacific Rise
120012	Environment, Hydrothermal vent	Pacific Ocean	2001

Taxonmaps

69479

Global distribution of 16S sequence AF458778 (>99% sequence identity) for Maridesulfovibrio hydrothermalis subclade from Microbeatlas

Aquatic Samples	450
Soil Samples	24
Animal Samples	40
Plant Samples	7
Total Samples	521

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5513	1	Risk group (German classification) According to TRBA 466
120012	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM33102v1 assembly for Maridesulfovibrio hydrothermalis AM13 = DSM 14728	chromosome	GCA_000331025	1121451.3	2648501899	1121451	88.9
66792	ASM42524v1 assembly for Maridesulfovibrio hydrothermalis AM13 = DSM 14728	scaffold	GCA_000425245	1121451.5	2523533539	1121451	72.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5513	Desulfovibrio hydrothermalis 16S ribosomal RNA gene, partial sequence	AF458778	1535		1121451

GC content

@ref	GC-content (mol%)	Method
5513	47±0.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM33102v1 assembly for Maridesulfovibrio hydrothermalis AM13 = DSM 14728
BV-BRC: 1121451.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	58.66	no
125439	gram_stain	BacteriaNetⓘ	negative	99.14	no
125439	motility	BacteriaNetⓘ	yes	63.50	no
125439	spore_formation	BacteriaNetⓘ	no	99.97	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfovibrio hydrothermalis AM13 = DSM 14728
PATRIC: 1121451.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.96	no
125438	anaerobic	anaerobicⓘ	yes	80.07	yes
125438	spore-forming	spore-formingⓘ	no	89.27	no
125438	aerobic	aerobicⓘ	no	91.48	yes
125438	thermophilic	thermophileⓘ	no	89.58	yes
125438	flagellated	motile2+ⓘ	yes	81.65	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Bioinformatics Investigations of Universal Stress Proteins from Mercury-Methylating Desulfovibrionaceae.	Isokpehi RD, McInnis DS, Destefano AM, Johnson GS, Walker AD, Hall YA, Mapp BW, Johnson MO, Simmons SS.	Microorganisms	10.3390/microorganisms9081780	2021
	Quantification of Organic Carbon Sequestered by Biogenic Iron Sulfide Minerals in Long-Term Anoxic Laboratory Incubations.	Nabeh N, Brokaw C, Picard A.	Front Microbiol	10.3389/fmicb.2022.662219	2022
	Complete Genome Sequence of the Piezophilic, Mesophilic, Sulfate-Reducing Bacterium Desulfovibrio hydrothermalis AM13(T.).	Ji B, Gimenez G, Barbe V, Vacherie B, Rouy Z, Amrani A, Fardeau ML, Bertin P, Alazard D, Leroy S, Talla E, Ollivier B, Dolla A, Pradel N.	Genome Announc	10.1128/genomea.00226-12	2013
	Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut.	Takeuchi M, Kuwahara H, Murakami T, Takahashi K, Kajitani R, Toyoda A, Itoh T, Ohkuma M, Hongoh Y.	ISME J	10.1038/s41396-020-0688-1	2020
	Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus.	Sharma G, Narwani T, Subramanian S.	PLoS One	10.1371/journal.pone.0148593	2016
	Transcriptomics reveal several gene expression patterns in the piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure.	Amrani A, Bergon A, Holota H, Tamburini C, Garel M, Ollivier B, Imbert J, Dolla A, Pradel N.	PLoS One	10.1371/journal.pone.0106831	2014
Phylogeny	Desulfovibrio hydrothermalis sp. nov., a novel sulfate-reducing bacterium isolated from hydrothermal vents.	Alazard D, Dukan S, Urios A, Verhe F, Bouabida N, Morel F, Thomas P, Garcia JL, Ollivier B	Int J Syst Evol Microbiol	10.1099/ijs.0.02323-0	2003

References

#5513	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14728
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35429	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120012	Collection of Institut Pasteur ; Curators of the CIP; CIP 107303
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Maridesulfovibrio hydrothermalis (DSM 14728, CIP 107303, AM13)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000331025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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