Name: Solidesulfovibrio magneticus RS-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4140

Type strain:

Species: Solidesulfovibrio magneticus

Strain Designation: RS-1

Culture col. no.: DSM 13731, JCM 12223

Strain history: <- T. Matsunaga, Tokyo University of Agriculture and Technology, Japan; RS-1 <- T. Sakaguchi and T. Matsunaga {1993}

NCBI tax ID(s): 184917 (species)

Section

Solidesulfovibrio magneticus RS-1 is an anaerobe, mesophilic bacterium that was isolated from freshwater sulfide-rich mud.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Solidesulfovibrio*
	Species	**Solidesulfovibrio magneticus**
	Full Scientific Name (PNU)	Solidesulfovibrio magneticus (Sakaguchi et al. 2002) Waite et al. 2020

Synonym

Desulfovibrio magneticus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5132]

Culture medium

DESULFOVIBRIO MAGNETICUS MEDIUM (DSMZ Medium 896)

[Ref.: #5132]

Culture medium growth

[Ref.: #5132]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5132]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5132]			growth	30 °C

[Ref.: #5132]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5132]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5132]	Sample type/isolated from	freshwater sulfide-rich mud
[Ref.: #5132]	Geographic location (country and/or sea, region)	Wakayama
[Ref.: #5132]	Country	Japan
[Ref.: #5132]	Country ISO 3 Code	JPN
[Ref.: #5132]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D43944 (>99% sequence identity) for Desulfovibrio from Microbeatlas

Aquatic Samples	2969
Soil Samples	453
Animal Samples	351
Plant Samples	438
Total Samples	4211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5132]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5132]	Desulfovibrio magneticus gene for 16S rRNA	D43944	1540	ENA	573370 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Solidesulfovibrio magneticus RS-1 RS-1	GCA_000010665	complete	GenBank	573370 tax ID	*

[Ref.: #5132]

GC-content

65.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5132]

Culture collection no.

DSM 13731, JCM 12223

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163803, 401032

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio magneticus sp. nov., a novel sulfate-reducing bacterium that produces intracellular single-domain-sized magnetite particles.	Sakaguchi T, Arakaki A, Matsunaga T	Int J Syst Evol Microbiol	10.1099/00207713-52-1-215	2002	*
Enzymology	Cadmium recovery by a sulfate-reducing magnetotactic bacterium, Desulfovibrio magneticus RS-1, using magnetic separation.	Arakaki A, Takeyama H, Tanaka T, Matsunaga T	Appl Biochem Biotechnol	10.1385/abab:98-100:1-9:833	2002	*
Proteome	Proteomic analysis of irregular, bullet-shaped magnetosomes in the sulphate-reducing magnetotactic bacterium Desulfovibrio magneticus RS-1.	Matsunaga T, Nemoto M, Arakari A, Tanaka M	Proteomics	10.1002/pmic.200800881	2009	*
Genetics	Whole genome sequence of Desulfovibrio magneticus strain RS-1 revealed common gene clusters in magnetotactic bacteria.	Nakazawa H, Arakaki A, Narita-Yamada S, Yashiro I, Jinno K, Aoki N, Tsuruyama A, Okamura Y, Tanikawa S, Fujita N, Takeyama H, Matsunaga T	Genome Res	10.1101/gr.088906.108	2009	*
Metabolism	Desulfovibrio magneticus RS-1 contains an iron- and phosphorus-rich organelle distinct from its bullet-shaped magnetosomes.	Byrne ME, Ball DA, Guerquin-Kern JL, Rouiller I, Wu TD, Downing KH, Vali H, Komeili A	Proc Natl Acad Sci U S A	10.1073/pnas.1001290107	2010	*
Metabolism	A genetic strategy for probing the functional diversity of magnetosome formation.	Rahn-Lee L, Byrne ME, Zhang M, Le Sage D, Glenn DR, Milbourne T, Walsworth RL, Vali H, Komeili A	PLoS Genet	10.1371/journal.pgen.1004811	2015	*
Pathogenicity	Anisotropy of bullet-shaped magnetite nanoparticles in the magnetotactic bacteria Desulfovibrio magneticus sp. Strain RS-1.	Chariaou M, Rahn-Lee L, Kind J, Garcia-Rubio I, Komeili A, Gehring AU	Biophys J	10.1016/j.bpj.2015.01.007	2015	*
Phylogeny	MamA as a Model Protein for Structure-Based Insight into the Evolutionary Origins of Magnetotactic Bacteria.	Zeytuni N, Cronin S, Lefevre CT, Arnoux P, Baran D, Shtein Z, Davidov G, Zarivach R	PLoS One	10.1371/journal.pone.0130394	2015	*
Metabolism	Elongated magnetite nanoparticle formation from a solid ferrous precursor in a magnetotactic bacterium.	Baumgartner J, Menguy N, Gonzalez TP, Morin G, Widdrat M, Faivre D	J R Soc Interface	10.1098/rsif.2016.0665	2016	*
Metabolism	Genome Editing Method for the Anaerobic Magnetotactic Bacterium Desulfovibrio magneticus RS-1.	Grant CR, Rahn-Lee L, LeGault KN, Komeili A	Appl Environ Microbiol	10.1128/AEM.01724-18	2018	*
Phylogeny	Isolation and cultivation of a novel sulfate-reducing magnetotactic bacterium belonging to the genus Desulfovibrio.	Shimoshige H, Kobayashi H, Shimamura S, Mizuki T, Inoue A, Maekawa T	PLoS One	10.1371/journal.pone.0248313	2021	*
Phylogeny	Fundidesulfovibrio magnetotacticus sp. nov., a sulphate-reducing magnetotactic bacterium, isolated from sediments and freshwater of a pond.	Shimoshige H, Kobayashi H, Shimamura S, Miyazaki M, Maekawa T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005516	2022	*
	Magnetite Crystal Orientation in Magnetosome Chains.	Kornig A, Winklhofer M, Baumgartner J, Gonzalez TP, Fratzl P, Faivre D	Adv Funct Mater	10.1002/adfm.201303737	2014	*

References

#5132

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13731

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Solidesulfovibrio magneticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF