Name: Desulfovibrio oxyclinae P1B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4133

Type strain:

Species: Desulfovibrio oxyclinae

Strain Designation: P1B

Culture col. no.: DSM 11498

Strain history: <- H. Cypionka, Univ. Oldenburg, Germany; P1B <- Y. Cohen, Hebrew Univ. Jerusalem, Israel {1990}

NCBI tax ID(s): 1121459 (strain), 63560 (species)

SI-ID 49122

DSM 11498

Section

Desulfovibrio oxyclinae P1B is an anaerobe, mesophilic, motile bacterium that was isolated from hypersaline cyanobacterial mat.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Desulfovibrio*
	Species	**Desulfovibrio oxyclinae**
	Full Scientific Name (LPSN)	Desulfovibrio oxyclinae Krekeler et al. 2000

Synonym

"Pseudodesulfovibrio oxyclinae"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.978

[Ref.: #69480]	Motility	yes Confidence in %94.264

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4389]

Culture medium

DESULFOVIBRIO HALOPHILUS MEDIUM (DSMZ Medium 496)

[Ref.: #4389]

Culture medium growth

[Ref.: #4389]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4389]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4389]			growth	30 °C

[Ref.: #4389]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4389]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.821

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4389]	Sample type/isolated from	hypersaline cyanobacterial mat
[Ref.: #4389]	Geographic location (country and/or sea, region)	Sinai, Solar Lake
[Ref.: #4389]	Country	Egypt
[Ref.: #4389]	Country ISO 3 Code	EGY
[Ref.: #4389]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U33316 (>99% sequence identity) for Desulfovibrio oxyclinae from Microbeatlas

Aquatic Samples	8
Soil Samples	6
Animal Samples	1
Plant Samples
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4389]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4389]	Desulfovibrio oxyclinae strain P1B 16S ribosomal RNA gene, partial sequence	U33316	1494	ENA	63560 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovibrio oxyclinae DSM 11498	GCA_000375485	contig	GenBank	1121459 tax ID	*
[Ref.: #66792]	Desulfovibrio oxyclinae DSM 11498	1121459.3	wgs	PATRIC	1121459 tax ID	*
[Ref.: #66792]	Desulfovibrio oxyclinae DSM 11498	2515154157	draft	JGI IMG/M	1121459 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio oxyclinae DSM 11498 PATRIC: 1121459.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio oxyclinae DSM 11498 PATRIC: 1121459.3
[Ref.: #69480]	motile	yes	91.376	no
[Ref.: #69480]	flagellated	no	53	no
[Ref.: #69480]	gram-positive	no	98.481	no
[Ref.: #69480]	anaerobic	yes	98.952	yes
[Ref.: #69480]	aerobic	no	97.739	no
[Ref.: #69480]	halophile	yes	50.759	no
[Ref.: #69480]	spore-forming	no	95.01	no
[Ref.: #69480]	thermophile	no	79.783	yes
[Ref.: #69480]	glucose-util	no	60.959	no
[Ref.: #69480]	glucose-ferment	no	85.619	no

Availability in culture collections External links

[Ref.: #4389]

Culture collection no.

DSM 11498

[Ref.: #73636]

SI-ID 49122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Aerotaxis in Desulfovibrio.	Eschemann A, Kuhl M, Cypionka H	Environ Microbiol	10.1046/j.1462-2920.1999.00057.x	1999	*

References

#4389

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11498

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73636

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49122.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio oxyclinae DSM 11498

Desulfovibrio oxyclinae DSM 11498

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