Name: Desulfovibrio cuneatus DSM 11391
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4130

Type strain:

Species: Desulfovibrio cuneatus

Culture col. no.: DSM 11391, STL 1

Strain history: <- H.-D. Babenzien, Institut für Gewässerökologie und Binnenfischerei, Abteilung Limnologie Geschichteter Seen, Neuglobsow, Germany; STL1 <- H. Sass {1994}

NCBI tax ID(s): 1121443 (strain), 159728 (species)

SI-ID 49097

DSM 11391, BCRC 17418, CCRC 17418

Other strains from Desulfovibrio cuneatus

D. cuneatus DSM 11392, STL 4

Section

Desulfovibrio cuneatus DSM 11391 is an anaerobe, mesophilic, motile bacterium that was isolated from littoral sediment.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Desulfovibrio*
	Species	**Desulfovibrio cuneatus**
	Full Scientific Name (LPSN)	Desulfovibrio cuneatus Sass et al. 1998

Synonym

"Frigididesulfovibrio cuneatus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #69480]	Motility	yes Confidence in %96.253

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4343]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #4343]

Culture medium growth

[Ref.: #4343]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4343]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4343]			growth	28 °C

[Ref.: #4343]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4343]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.705

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4343]	Sample type/isolated from	littoral sediment
[Ref.: #4343]	Geographic location (country and/or sea, region)	Lake Stechlin
[Ref.: #4343]	Country	Germany
[Ref.: #4343]	Country ISO 3 Code	DEU
[Ref.: #4343]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X99501 (>99% sequence identity) for Desulfovibrio cuneatus subclade from Microbeatlas

Aquatic Samples	3626
Soil Samples	104
Animal Samples	1484
Plant Samples	70
Total Samples	5284

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4343]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4343]	Desulfovibrio cuneatus 16S rRNA gene, strain STL1	X99501	1504	ENA	159728 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfovibrio cuneatus DSM 11391	GCA_000430005	scaffold	GenBank	1121443 tax ID	*
[Ref.: #66792]	Desulfovibrio cuneatus DSM 11391	1121443.3	wgs	PATRIC	1121443 tax ID	*
[Ref.: #66792]	Desulfovibrio cuneatus DSM 11391	2523231026	draft	JGI IMG/M	1121443 tax ID	*

[Ref.: #4343]

GC-content

52.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio cuneatus DSM 11391 DSM 11391 NCBI: GCA_000430005.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio cuneatus DSM 11391 DSM 11391 NCBI: GCA_000430005.1
[Ref.: #69480]	motile	yes	86.593	no
[Ref.: #69480]	flagellated	no	62.215	no
[Ref.: #69480]	gram-positive	no	99.222	no
[Ref.: #69480]	anaerobic	yes	99.491	yes
[Ref.: #69480]	aerobic	no	99.111	yes
[Ref.: #69480]	halophile	no	88.44	no
[Ref.: #69480]	spore-forming	no	95.236	no
[Ref.: #69480]	thermophile	no	95.91	yes
[Ref.: #69480]	glucose-util	no	61.917	no
[Ref.: #69480]	glucose-ferment	no	78.048	no

Availability in culture collections External links

[Ref.: #4343]

Culture collection no.

DSM 11391, STL 1

[Ref.: #73633]

SI-ID 49097

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrotolerant sulfate-reducing bacteria from an oxic freshwater sediment, description of Desulfovibrio cuneatus sp. nov. and Desulfovibrio litoralis sp. nov.	Sass H, Berchtold M, Branke J, Konig H, Cypionka H, Babenzien HD	Syst Appl Microbiol	10.1016/S0723-2020(98)80025-8	1998	*

References

#4343

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11391

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73633

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49097.1 )

* These data were automatically processed and therefore are not curated

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Desulfovibrio cuneatus DSM 11391 DSM 11391

Desulfovibrio cuneatus DSM 11391 DSM 11391

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