Name: Alicyclobacillus herbarius CP-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 413

Type strain:

Species: Alicyclobacillus herbarius

Strain Designation: CP-1

Culture col. no.: DSM 13609, IAM 14883, NRIC 0477, JCM 21376, NBRC 100860

Strain history: IAM 14883 <-- K. Goto CP-1.

NCBI tax ID(s): 1120972 (strain), 122960 (species)

SI-ID 49496

DSM 13609, IAM 14883, NBRC 100860, KCTC 3896, JCM 21376

Section

Alicyclobacillus herbarius CP-1 is a spore-forming, thermophilic, motile bacterium that was isolated from dry flower of Hibiscus.

motile
spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus herbarius**
	Full Scientific Name (LPSN)	Alicyclobacillus herbarius Goto et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.466

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5110]

Culture medium

BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)

[Ref.: #5110]

Culture medium growth

[Ref.: #5110]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5110]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5110]			growth	55 °C
[Ref.: #67770]			growth	55 °C

[Ref.: #5110]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

yes Confidence in %99.704

[Ref.: #67770]

Observation

quinones: MK-7, MK-3, MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5110]	Sample type/isolated from	dry flower of Hibiscus
[Ref.: #5110]	Host species	Hibiscus

[Ref.: #67770]	Sample type/isolated from	Herbal tea of hibiscus
* marker position based on {}

Isolation sources categories

#Host	#Plants	-
#Host Body-Site	#Plant	#Flower

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681266 (>99% sequence identity) for Alicyclobacillus herbarius subclade from Microbeatlas

Aquatic Samples	197
Soil Samples	1750
Animal Samples	1427
Plant Samples	522
Total Samples	3896

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5110]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Alicyclobacillus herbarius gene for 16S ribosomal RNA, partial sequence	AB042055	1529	ENA	122960 tax ID	*
[Ref.: #20218]	Alicyclobacillus herbarius isolate Ah5 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723612	514	ENA	122960 tax ID	*
[Ref.: #20218]	Alicyclobacillus herbarius isolate Ah11 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723613	514	ENA	122960 tax ID	*
[Ref.: #20218]	Alicyclobacillus herbarius isolate Ah20 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723614	564	ENA	122960 tax ID	*
[Ref.: #20218]	Alicyclobacillus herbarius gene for 16S rRNA, partial sequence, strain: NBRC 100860	AB681266	1471	ENA	122960 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus herbarius DSM 13609	GCA_000430585	scaffold	GenBank	1120972 tax ID
[Ref.: #66792]	Alicyclobacillus herbarius DSM 13609	1120972.3	wgs	PATRIC	1120972 tax ID	*
[Ref.: #66792]	Alicyclobacillus herbarius DSM 13609	2523533552	draft	JGI IMG/M	1120972 tax ID	*

[Ref.: #67770]

GC-content

56.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alicyclobacillus herbarius DSM 13609 DSM 13609 NCBI: GCA_000430585.1
[Ref.: #69481]	spore-forming	yes	86	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus herbarius DSM 13609 PATRIC: 1120972.3
[Ref.: #69480]	motile	yes	80.963	no
[Ref.: #69480]	flagellated	no	69.58	no
[Ref.: #69480]	gram-positive	yes	79.182	no
[Ref.: #69480]	anaerobic	no	98.774	no
[Ref.: #69480]	aerobic	yes	89.568	no
[Ref.: #69480]	halophile	no	94.917	no
[Ref.: #69480]	spore-forming	yes	95.801	no
[Ref.: #69480]	glucose-util	yes	90.549	no
[Ref.: #69480]	thermophile	yes	99.999	yes
[Ref.: #69480]	glucose-ferment	no	88.965	no

Availability in culture collections External links

[Ref.: #5110]

Culture collection no.

DSM 13609, IAM 14883, NRIC 0477, JCM 21376, NBRC 100860

[Ref.: #70093]

SI-ID 49496

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus herbarius sp. nov., a novel bacterium containing omega-cycloheptane fatty acids, isolated from herbal tea.	Goto K, Matsubara H, Mochida K, Matsumura T, Hara Y, Niwa M, Yamasato K	Int J Syst Evol Microbiol	10.1099/00207713-52-1-109	2002	*

References

#5110

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13609

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70093

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49496.1 )

* These data were automatically processed and therefore are not curated

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Alicyclobacillus herbarius DSM 13609 DSM 13609

Alicyclobacillus herbarius DSM 13609

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