Name: Halodesulfovibrio aestuarii W218
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4126

Type strain:

Species: Halodesulfovibrio aestuarii

Strain Designation: W218

Culture col. no.: DSM 10141

Strain history: <- M. J. E. C. van der Maarel, Univ. Groningen, The Netherlands; W218 <- M. J. E. C. van der Maarel {1994}

NCBI tax ID(s): 1121434 (strain), 126333 (species)

SI-ID 48761

DSM 10141

Other strains from Halodesulfovibrio aestuarii

H. aestuarii DSM 17919, ATCC 29578, NCIMB 9335, ... (type strain)
H. aestuarii JBL, DSM 14367

Section

Halodesulfovibrio aestuarii W218 is an anaerobe, mesophilic, motile bacterium that was isolated from marine sediment.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Halodesulfovibrio*
	Species	**Halodesulfovibrio aestuarii**
	Full Scientific Name (LPSN)	Halodesulfovibrio aestuarii (Postgate and Campbell 1966) Shivani et al. 2017

	Synonym	Desulfovibrio desulfuricans subsp. aestuarii
	Synonym	Desulfovibrio acrylicus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %94.856

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3818]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #3818]

Culture medium growth

[Ref.: #3818]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3818]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3818]			growth	30 °C

[Ref.: #3818]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3818]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3818]	Sample type/isolated from	marine sediment
[Ref.: #3818]	Geographic location (country and/or sea, region)	Wadden Sea near Westernieland
[Ref.: #3818]	Country	Netherlands
[Ref.: #3818]	Country ISO 3 Code	NLD
[Ref.: #3818]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U32578 (>99% sequence identity) for Halodesulfovibrio from Microbeatlas

Aquatic Samples	28
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	30

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3818]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3818]	Desulfovibrio acrylicus 16S ribosomal RNA gene	U32578	1354	ENA	1121434 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halodesulfovibrio aestuarii DSM 10141	GCA_000422525	scaffold	GenBank	1121434 tax ID	*
[Ref.: #66792]	Desulfovibrio acrylicus DSM 10141	1121434.3	wgs	PATRIC	1121434 tax ID	*
[Ref.: #66792]	Halodesulfovibrio aestuarii DSM 10141	2524614816	draft	JGI IMG/M	1121434 tax ID	*

[Ref.: #3818]

GC-content

45.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halodesulfovibrio aestuarii DSM 10141 DSM 10141 NCBI: GCA_000422525.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halodesulfovibrio aestuarii DSM 10141 DSM 10141 NCBI: GCA_000422525.1
[Ref.: #69480]	motile	yes	90.36	no
[Ref.: #69480]	flagellated	yes	58.939	no
[Ref.: #69480]	gram-positive	no	99.393	no
[Ref.: #69480]	anaerobic	yes	99.288	no
[Ref.: #69480]	aerobic	no	98.655	yes
[Ref.: #69480]	halophile	no	54.937	no
[Ref.: #69480]	spore-forming	no	95.166	no
[Ref.: #69480]	glucose-util	no	51.318	no
[Ref.: #69480]	thermophile	no	97.501	yes
[Ref.: #69480]	glucose-ferment	no	73.712	no

Availability in culture collections External links

[Ref.: #3818]

Culture collection no.

DSM 10141

[Ref.: #73629]

SI-ID 48761

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru.	Finster KW, Kjeldsen KU	Antonie Van Leeuwenhoek	10.1007/s10482-009-9403-y	2009	*
Phylogeny	Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids.	Takii S, Hanada S, Hase Y, Tamaki H, Uyeno Y, Sekiguchi Y, Matsuura K	Int J Syst Evol Microbiol	10.1099/ijs.0.65750-0	2008	*
Phylogeny	Desulfovibrio psychrotolerans sp. nov., a psychrotolerant and moderately alkaliphilic sulfate-reducing deltaproteobacterium from the Himalayas.	Sasi Jyothsna TS, Sasikala Ch, Ramana ChV	Int J Syst Evol Microbiol	10.1099/ijs.0.65402-0	2008	*

References

#3818

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10141

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73629

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48761.1 )

* These data were automatically processed and therefore are not curated

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Halodesulfovibrio aestuarii DSM 10141 DSM 10141

Halodesulfovibrio aestuarii DSM 10141 DSM 10141

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