Name: Nitratidesulfovibrio termitidis HI1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4115

Type strain:

Species: Nitratidesulfovibrio termitidis

Strain Designation: HI1

Culture col. no.: DSM 5308, ATCC 49858, VKM B-1765

Strain history: <- M. Trinkerl, Universität Ulm, Angewandte Mikrobiologie, Ulm, Germany; HI1 <- M. Trinkerl {1988}

NCBI tax ID(s): 42252 (species)

SI-ID 45249

ATCC 49858, DSM 5308, VKM B-1765

Section

Nitratidesulfovibrio termitidis HI1 is an anaerobe, mesophilic bacterium that was isolated from hindgut of the termite Heterotermes indicola.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Nitratidesulfovibrio*
	Species	**Nitratidesulfovibrio termitidis**
	Full Scientific Name (LPSN)	Nitratidesulfovibrio termitidis (Trinkerl et al. 1991) Waite et al. 2020

	Synonym	Desulfovibrio termitidis
	Synonym	Cupidesulfovibrio termitidis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1985]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #1985]

Culture medium growth

[Ref.: #1985]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1985]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1985]			growth	35 °C

[Ref.: #1985]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1985]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1985]	Sample type/isolated from	hindgut of the termite Heterotermes indicola
[Ref.: #1985]	Host species	Heterotermes indicola
[Ref.: #1985]	Country	Germany
[Ref.: #1985]	Country ISO 3 Code	DEU
[Ref.: #1985]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1985]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1985]	D.termitidis DNA for 16S ribosomal RNA	X87409	1506	ENA	644897 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cupidesulfovibrio termitidis HI1	GCA_000504305	scaffold	GenBank	644897 tax ID	*

[Ref.: #1985]	GC-content	68.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #1985]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cupidesulfovibrio termitidis HI1 HI1 NCBI: GCA_000504305.1
[Ref.: #69480]	motile	yes	89.644	no
[Ref.: #69480]	flagellated	no	60.3	no
[Ref.: #69480]	gram-positive	no	98.788	no
[Ref.: #69480]	anaerobic	yes	98.219	yes
[Ref.: #69480]	halophile	no	82.831	no
[Ref.: #69480]	spore-forming	no	95.007	no
[Ref.: #69480]	thermophile	no	96.016	yes
[Ref.: #69480]	glucose-util	no	66.104	no
[Ref.: #69480]	aerobic	no	96.895	yes
[Ref.: #69480]	glucose-ferment	no	79.974	no

Availability in culture collections External links

[Ref.: #1985]

Culture collection no.

DSM 5308, ATCC 49858, VKM B-1765

[Ref.: #73618]

SI-ID 45249

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cupidesulfovibrio liaohensis gen. nov., sp. nov., a novel sulphate-reducing bacterium isolated from an oil reservoir and reclassification of Desulfovibrio oxamicus and Desulfovibrio termitidis as Cupidesulfovibrio oxamicus comb. nov. and Cupidesulfovibrio termitidis comb. nov.	Wan YY, Luo N, Liu XL, Lai QL, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004618	2021	*

References

#1985

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5308

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73618

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45249.1 )

* These data were automatically processed and therefore are not curated

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Cupidesulfovibrio termitidis HI1 HI1

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