Desulfovibrio desulfuricans Essex 6 | Type strain | DSM 642, ATCC 29577, NCIMB 8307, VKM B-1799, CCUG 34226, CIP 107039

Strain identifier

BacDive ID: 4073

Type strain:

Species: Desulfovibrio desulfuricans

Strain Designation: Essex 6

Culture col. no.: DSM 642, ATCC 29577, NCIMB 8307, VKM B-1799, CCUG 34226, CIP 107039

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #342]	Domain	Bacteria
[Ref.: #342]	Phylum	Proteobacteria
[Ref.: #342]	Class	Deltaproteobacteria
[Ref.: #342]	Order	Desulfovibrionales
[Ref.: #342]	Family	Desulfovibrionaceae
[Ref.: #342]	Genus	Desulfovibrio
[Ref.: #342]	Species	Desulfovibrio desulfuricans
[Ref.: #342]	Full Scientific Name	Desulfovibrio desulfuricans subsp. desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936
[Ref.: #342]	Strain Designation	Essex 6
[Ref.: #342]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Deltaproteobacteria		Int. J. Syst. Evol. Microbiol. 52:7*
[Ref.: #20215]	Family	Desulfovibrionaceae		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Genus	Desulfovibrio	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Desulfovibrio desulfuricans	comb. nov. (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Full Scientific Name	Desulfovibrio desulfuricans (Beijerinck 1895) Kluyver and van Niel 1936

[Ref.: #20215]

Synonym

Desulfovibrio desulfuricans subsp. desulfuricans

Information on morphological and physiological propertiesMorphology and physiology

Fatty acid profile

Type of FA analysis

whole cell analysis

Incubation medium

Agar/liquid

Incubation temperature (°C)

Incubation time (d)

Incubation pH

Incubation oxygen condition

Treatment/condition

Software version

Library/peak naming table

System

Instrument

Method/protocol

CCUG

Cutoff value

Reference

[Ref.: #51996]

Fatty acid	Percentage	ECL
14:0	0.4	14
15:0	1.1	15
16:0	9.9	16
17:0	0.7	17
18:0	0.4	18
14:0 ISO 3OH	8.8	15.117
15:0 ANTEISO	1.1	14.711
15:0 ISO	25.2	14.621
15:1 ISO F	0.8	14.414
15:1 ω5c	1.4	14.904
16:1 ISO H	0.4	15.461
16:1 ω7c	2.5	15.819
17:0 CYCLO	3.7	16.888
17:0 ISO	4.1	16.629
17:0 ISO 3OH	0.4	18.161
17:1 ISO I/16:0 DMA	2.9	16.481
17:1 ω8c	0.3	16.792
17:1 ω9c ISO	27.5	16.416
18:1 ω9c	0.5	17.769
18:2 ω6,9c/18:0 ANTE	4.6	17.724
Unidentified	0.5	15.399
Unidentified	0.3	16.288
Unidentified	0.7	17.103
unknown 13.566	1.4	13.566
unknown 14.966	0.4	14.966

[Ref.: #342]	Oxygen tolerance	anaerobe
[Ref.: #51996]	Oxygen tolerance	anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #342]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63), 30°C, anaerobic

[Ref.: #342]

Culture medium growth

[Ref.: #342]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #342]			growth	30 ̊C
[Ref.: #51996]			growth	37 ̊C

[Ref.: #342]	Temperature range	mesophilic
[Ref.: #51996]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #342]

Sample type/isolated from

tar and sand mix around corroded gas main

[Ref.: #342]

Geographic location (country and/or sea, region)

Essex

[Ref.: #342]

Country

United Kingdom

[Ref.: #342]

Continent

Europe

[Ref.: #51996]

Sample type/isolated from

Tar-sand mixture in waterlogged clay

[Ref.: #51996]

Country

United Kingdom

[Ref.: #51996]

Continent

Europe

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #342]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #342]

GC-content

57.4 mol%

sequence analysis

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #342]	whole genome shotgun sequence, Marker Gene (EMBL Direct submission)	Desulfovibrio desulfuricans DSM 642, whole genome shotgun sequencing project	NZ_ATUZ00000000		3391683	1121445
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans hmc operon, partial sequence	AF127653		1601	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans strain Essex 6 16S ribosomal RNA gene, complete sequence	AF192153	16S	1542	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans apr operon, complete sequence	AF226708		3057	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase beta subunit (dsrB) genes, partial cds	AF273034		1898	115117	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00010.10_C, whole genome shotgun sequence	ATUZ01000001	WGS	101748	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00011.11_C, whole genome shotgun sequence	ATUZ01000002	WGS	68342	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00012.12_C, whole genome shotgun sequence	ATUZ01000003	WGS	60596	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00013.13_C, whole genome shotgun sequence	ATUZ01000004	WGS	49642	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00014.14_C, whole genome shotgun sequence	ATUZ01000005	WGS	22226	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00015.15_C, whole genome shotgun sequence	ATUZ01000006	WGS	18158	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00016.16_C, whole genome shotgun sequence	ATUZ01000007	WGS	10546	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00017.17_C, whole genome shotgun sequence	ATUZ01000008	WGS	6892	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00018.18_C, whole genome shotgun sequence	ATUZ01000009	WGS	5514	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00019.19_C, whole genome shotgun sequence	ATUZ01000010	WGS	2791	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00001.1_C, whole genome shotgun sequence	ATUZ01000011	WGS	835434	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00020.20_C, whole genome shotgun sequence	ATUZ01000012	WGS	1667	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00002.2_C, whole genome shotgun sequence	ATUZ01000013	WGS	586626	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00003.3_C, whole genome shotgun sequence	ATUZ01000014	WGS	378826	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00004.4_C, whole genome shotgun sequence	ATUZ01000015	WGS	327842	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00005.5_C, whole genome shotgun sequence	ATUZ01000016	WGS	290436	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00006.6_C, whole genome shotgun sequence	ATUZ01000017	WGS	220774	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00007.7_C, whole genome shotgun sequence	ATUZ01000018	WGS	177308	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00008.8_C, whole genome shotgun sequence	ATUZ01000019	WGS	113826	1121445	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 G449DRAFT_scaffold00009.9_C, whole genome shotgun sequence	ATUZ01000020	WGS	112489	1121445	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans dissimilatory sulfite reductase subunit A (dsrA) gene, partial cds	AY015495		597	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans Essex 6 16S-23S internal transcribed spacer region, partial sequence	AY033879	16S	427	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans dissimilatory sulfite reductase A subunit gene, partial cds	AY820828		485	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans strain Essex 6 [Fe] hydrogenase large subunit (hydA) gene, partial cds; and [Fe] hydrogenase small subunit gene, complete cds	HQ228171		1098	115117	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfovibrio desulfuricans subsp. desulfuricans strain Essex 6 [NiFe] hydrogenase large subunit gene, partial cds	HQ228172		1398	115117	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Desulfovibrio desulfuricans gene for flavodoxin	X59438		529	115117	*
[Ref.: #342]	INSDC	Desulfovibrio desulfuricans strain ATCC 27774 16S ribosomal RNA gene, partial sequence	M34113		1551	525146

Availability in culture collectionsStrain availability

[Ref.: #342]

Culture collection no.

DSM 642, ATCC 29577, NCIMB 8307, VKM B-1799, CCUG 34226, CIP 107039

[Ref.: #342]

Strain history

<- G. Gottschalk, Universität Göttingen, Germany <- NCIB <- M. E. Adams and K. R. Butlin, National Chemical Laboratory, Teddington, Middlesex, U.K.; Essex 6 {1948}

[Ref.: #20218]

Associated Passport(s) in StrainInfo

8936, 8933, 107031, 133187

References

#342	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 642

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#51996 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34226
* These References are textmined

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