Name: Solidesulfovibrio carbinolicus DSM 3852
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4072

Type strain:

Species: Solidesulfovibrio carbinolicus

Culture col. no.: DSM 3852, VKM B-1758

Strain history: <- H.J. Nanninga, EDK 82

NCBI tax ID(s): 296842 (species)

SI-ID 47768

DSM 3852, VKM B-1758

Section

Solidesulfovibrio carbinolicus DSM 3852 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from anaerobic waste water treatment plant, potato starch factory.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Solidesulfovibrio*
	Species	**Solidesulfovibrio carbinolicus**
	Full Scientific Name (LPSN)	Solidesulfovibrio carbinolicus (Nanninga and Gottschal 1995) Waite et al. 2020

Synonym

Desulfovibrio carbinolicus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.909

[Ref.: #69480]	Motility	yes Confidence in %96.909

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1482]

Culture medium

DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)

[Ref.: #1482]

Culture medium growth

[Ref.: #1482]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1482]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1482]			growth	37 °C

[Ref.: #1482]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1482]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.546

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.11

[Ref.: #1482]	Name of produced compound	1,3 propanediol
[Ref.: #1482]	Name of produced compound	3-OH propionate

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1482]	Sample type/isolated from	anaerobic waste water treatment plant, potato starch factory
[Ref.: #1482]	Geographic location (country and/or sea, region)	Dekrim
[Ref.: #1482]	Country	Netherlands
[Ref.: #1482]	Country ISO 3 Code	NLD
[Ref.: #1482]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Engineered	#Waste	#Water treatment plant
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ186201 (>99% sequence identity) for Desulfovibrio from Microbeatlas

Aquatic Samples	2969
Soil Samples	453
Animal Samples	351
Plant Samples	438
Total Samples	4211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1482]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1482]	Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence	AY626035	1510	ENA	296842 tax ID
[Ref.: #20218]	Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence	DQ186201	1026	ENA	296842 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Solidesulfovibrio carbinolicus DSM 3852	GCA_004135975	complete	GenBank	296842 tax ID	*
[Ref.: #66792]	Desulfovibrio carbinolicus strain DSM 3852	296842.5	complete	PATRIC	296842 tax ID	*
[Ref.: #66792]	Desulfovibrio carbinolicus DSM 3852	2841463281	complete	JGI IMG/M	296842 tax ID	*

[Ref.: #1482]

GC-content

65.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio carbinolicus DSM 3852 NCBI: GCA_004135975.1
[Ref.: #69481]	spore-forming	no	86	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio carbinolicus DSM 3852 NCBI: GCA_004135975.1
[Ref.: #69480]	motile	yes	87.911	no
[Ref.: #69480]	flagellated	no	75.797	no
[Ref.: #69480]	gram-positive	no	98.675	no
[Ref.: #69480]	anaerobic	yes	97.177	yes
[Ref.: #69480]	aerobic	no	97.342	no
[Ref.: #69480]	halophile	no	83.104	no
[Ref.: #69480]	spore-forming	no	92.588	no
[Ref.: #69480]	glucose-util	no	53.682	no
[Ref.: #69480]	thermophile	no	92.827	yes
[Ref.: #69480]	glucose-ferment	no	80.972	no

Availability in culture collections External links

[Ref.: #1482]

Culture collection no.

DSM 3852, VKM B-1758

[Ref.: #73575]

SI-ID 47768

References

#1482

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3852

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73575

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47768.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Solidesulfovibrio carbinolicus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Desulfovibrio carbinolicus DSM 3852

Desulfovibrio carbinolicus DSM 3852

Change proposal

Change proposal