Solidesulfovibrio carbinolicus (DSM 3852, VKM B-1758)

Name: Solidesulfovibrio carbinolicus (DSM 3852, VKM B-1758)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4072

Type strain

Culture col. no. DSM 3852 VKM B-1758

NCBI tax ID(s) 296842

Special Collections DSMZ

History DSMZ <- H.J. Nanninga, EDK 82

Links

Solidesulfovibrio carbinolicus DSM 3852 is an anaerobe bacterium that was isolated from anaerobic waste water treatment plant, potato starch factory.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47768

DSM 3852,VKM B-1758

@ref 20215

Last LPSN update 2026-05-29 08:25:51

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Solidesulfovibrio

Species Solidesulfovibrio carbinolicus

Full scientific name Solidesulfovibrio carbinolicus (Nanninga and Gottschal 1995) Waite et al. 2020

Synonyms (1)

Desulfovibrio carbinolicus

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1482	DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)		Medium recipe at MediaDive	Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l Ethanol absolute 0.697906 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l Yeast extract 0.0997009 g/l Casamino acids 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1482	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1482	anaerobe
125439	anaerobe	97.07

Spore formation

@ref	Spore formation	Confidence
125439		98.305

Compound production

@ref	Compound
1482	1,3 propanediol
1482	3-OH propionate

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	-
#Engineered	#Waste	#Water treatment plant
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1482	anaerobic waste water treatment plant, potato starch factory	Dekrim	Netherlands	NLD	Europe

Taxonmaps

69479

Global distribution of 16S sequence DQ186201 (>99% sequence identity) for Desulfovibrio from Microbeatlas

Aquatic Samples	2969
Soil Samples	453
Animal Samples	351
Plant Samples	438
Total Samples	4211

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1482	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM413597v1 assembly for Solidesulfovibrio carbinolicus DSM 3852	complete	GCA_004135975	296842.5	2841463281	296842	98.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence	DQ186201	1026		296842
1482	Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence	AY626035	1510		296842

GC content

1482

GC-content (mol%)65.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM413597v1 assembly for Solidesulfovibrio carbinolicus DSM 3852
BV-BRC: 296842.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.07	no
125439	gram_stain	BacteriaNetⓘ	negative	84.11	no
125439	motility	BacteriaNetⓘ	yes	60.66	no
125439	spore_formation	BacteriaNetⓘ	no	98.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfovibrio carbinolicus DSM 3852
NCBI: GCA_004135975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	86.83	no
125438	anaerobic	anaerobicⓘ	yes	75.59	yes
125438	aerobic	aerobicⓘ	no	85.38	yes
125438	spore-forming	spore-formingⓘ	no	81.43	no
125438	thermophilic	thermophileⓘ	no	84.52	no
125438	flagellated	motile2+ⓘ	yes	69.33	no

Literature

Title	Authors	Journal	DOI	Year
Identification of novel tail-anchored membrane proteins integrated by the bacterial twin-arginine translocase.	Gallego-Parrilla JJ, Severi E, Chandra G, Palmer T.	Microbiology (Reading)	10.1099/mic.0.001431	2024

References

#1482	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3852
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Solidesulfovibrio carbinolicus (DSM 3852, VKM B-1758)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004135975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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