Name: Desulfomicrobium escambiense DSM 10707
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4057

Type strain:

Species: Desulfomicrobium escambiense

Culture col. no.: DSM 10707, ATCC 51164, ESC 1

Strain history: <- ATCC <- B. R. Sharak Genthner, ESC1

NCBI tax ID(s): 1121411 (strain), 29503 (species)

SI-ID 46139

ATCC 51164, DSM 10707, VTT E-001445

Section

Desulfomicrobium escambiense DSM 10707 is an anaerobe, mesophilic, motile bacterium that was isolated from anoxic freshwater sediment.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfomicrobiaceae*
	Genus	*Desulfomicrobium*
	Species	**Desulfomicrobium escambiense**
	Full Scientific Name (LPSN)	Desulfomicrobium escambiense corrig. Sharak Genthner et al. 1996

Synonym

Desulfomicrobium escambium

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %95.463

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4048]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #4048]

Culture medium growth

[Ref.: #4048]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4048]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4048]			growth	30 °C

[Ref.: #4048]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4048]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4048]	Sample type/isolated from	anoxic freshwater sediment
[Ref.: #4048]	Geographic location (country and/or sea, region)	Florida, Escambia River
[Ref.: #4048]	Country	USA
[Ref.: #4048]	Country ISO 3 Code	USA
[Ref.: #4048]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ277886 (>99% sequence identity) for Desulfomicrobium escambiense from Microbeatlas

Aquatic Samples	18
Soil Samples	5
Animal Samples
Plant Samples	2
Total Samples	25

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4048]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4048]	Desulfomicrobium escambiense 16S rRNA gene, strain DSM 10707T	AJ277886	1463	ENA	29503 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfomicrobium escambiense DSM 10707	GCA_000428825	scaffold	GenBank	1121411 tax ID	*
[Ref.: #66792]	Desulfomicrobium escambiense DSM 10707	1121411.3	wgs	PATRIC	1121411 tax ID	*
[Ref.: #66792]	Desulfomicrobium escambiense DSM 10707	2524023157	draft	JGI IMG/M	1121411 tax ID	*

[Ref.: #4048]

GC-content

59.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfomicrobium escambiense DSM 10707 DSM 10707 NCBI: GCA_000428825.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfomicrobium escambiense DSM 10707 DSM 10707 NCBI: GCA_000428825.1
[Ref.: #69480]	motile	yes	89.571	no
[Ref.: #69480]	flagellated	no	54.991	no
[Ref.: #69480]	gram-positive	no	99.01	no
[Ref.: #69480]	anaerobic	yes	98.596	no
[Ref.: #69480]	aerobic	no	98.017	no
[Ref.: #69480]	halophile	no	88.983	no
[Ref.: #69480]	spore-forming	no	93.988	no
[Ref.: #69480]	glucose-util	no	62.592	no
[Ref.: #69480]	thermophile	no	98.253	yes
[Ref.: #69480]	glucose-ferment	no	75.064	no

Availability in culture collections External links

[Ref.: #4048]

Culture collection no.

DSM 10707, ATCC 51164, ESC 1

[Ref.: #73562]

SI-ID 46139

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Towards sulfide removal and sulfate reducing bacteria inhibition: Function of biosurfactants produced by indigenous isolated nitrate reducing bacteria.	Fan F, Zhang B, Liu J, Cai Q, Lin W, Chen B	Chemosphere	10.1016/j.chemosphere.2019.124655	2019	*
Phylogeny	Characterization of Desulfomicrobium salsuginis sp. nov. and Desulfomicrobium aestuarii sp. nov., two new sulfate-reducing bacteria isolated from the Adour estuary (French Atlantic coast) with specific mercury methylation potentials.	Dias M, Salvado JC, Monperrus M, Caumette P, Amouroux D, Duran R, Guyoneaud R	Syst Appl Microbiol	10.1016/j.syapm.2007.09.002	2008	*

References

#4048

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10707

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73562

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46139.1 )

* These data were automatically processed and therefore are not curated

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Desulfomicrobium escambiense DSM 10707 DSM 10707

Desulfomicrobium escambiense DSM 10707 DSM 10707

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