Name: Desulfomicrobium apsheronum 1105
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4053

Type strain:

Species: Desulfomicrobium apsheronum

Strain Designation: 1105

Culture col. no.: DSM 5918, VKM B-1804

Strain history: <- M.B. Vainstein, VKM <- E.P. Rozanova, 1105.

NCBI tax ID(s): 52560 (species)

SI-ID 48028

DSM 5918, VKM B-1804

Section

Desulfomicrobium apsheronum 1105 is an anaerobe, mesophilic, motile bacterium that was isolated from water, oil-bearing deposits.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfomicrobiaceae*
	Genus	*Desulfomicrobium*
	Species	**Desulfomicrobium apsheronum**
	Full Scientific Name (LPSN)	Desulfomicrobium apsheronum Rozanova et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #69480]	Motility	yes Confidence in %98.229

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2365]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #2365]

Culture medium growth

[Ref.: #2365]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2365]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2365]			growth	30 °C

[Ref.: #2365]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2365]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.947

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2365]	Sample type/isolated from	water, oil-bearing deposits
[Ref.: #2365]	Geographic location (country and/or sea, region)	Apsheron peninsula
[Ref.: #2365]	Country	Azerbaijan
[Ref.: #2365]	Country ISO 3 Code	AZE
[Ref.: #2365]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2365]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2365]	Desulfomicrobium apsheronum 16S ribosomal RNA gene, partial sequence	U64865	1473	ENA	52560 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfomicrobium apsheronum DSM 5918	GCA_900114115	scaffold	GenBank	52560 tax ID	*
[Ref.: #66792]	Desulfomicrobium apsheronum strain DSM 5918	52560.3	wgs	PATRIC	52560 tax ID	*
[Ref.: #66792]	Desulfomicrobium apsheronum DSM 5918	2622736590	draft	JGI IMG/M	52560 tax ID	*

[Ref.: #2365]

GC-content

52.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfomicrobium apsheronum DSM 5918 NCBI: GCA_900114115.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfomicrobium apsheronum DSM 5918 NCBI: GCA_900114115.1
[Ref.: #69480]	motile	yes	90.894	no
[Ref.: #69480]	flagellated	no	59.868	no
[Ref.: #69480]	gram-positive	no	98.956	no
[Ref.: #69480]	anaerobic	yes	99.275	yes
[Ref.: #69480]	aerobic	no	98.373	no
[Ref.: #69480]	halophile	no	81.583	no
[Ref.: #69480]	spore-forming	no	94.663	no
[Ref.: #69480]	glucose-ferment	no	79.847	no
[Ref.: #69480]	thermophile	no	98.428	no
[Ref.: #69480]	glucose-util	no	68.346	no

Availability in culture collections External links

[Ref.: #2365]

Culture collection no.

DSM 5918, VKM B-1804

[Ref.: #73558]

SI-ID 48028

References

#2365

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5918

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48028.1 )

* These data were automatically processed and therefore are not curated

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Desulfomicrobium apsheronum DSM 5918

Desulfomicrobium apsheronum DSM 5918

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