Name: Desulfonatronovibrio hydrogenovorans Z-7935
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4034

Type strain:

Species: Desulfonatronovibrio hydrogenovorans

Strain Designation: Z-7935

Culture col. no.: DSM 9292

Strain history: <- T. Zhilina, Z-7935

NCBI tax ID(s): 1121413 (strain), 53245 (species)

SI-ID 48611

DSM 9292

Other strains from Desulfonatronovibrio hydrogenovorans

D. hydrogenovorans Z-7953, DSM 10321

Section

Desulfonatronovibrio hydrogenovorans Z-7935 is an anaerobe, lithoheterotroph, mesophilic bacterium that was isolated from mud.

Gram-negative
motile
vibrio-shaped
anaerobe
lithoheterotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfohalobiaceae*
	Genus	*Desulfonatronovibrio*
	Species	**Desulfonatronovibrio hydrogenovorans**
	Full Scientific Name (LPSN)	Desulfonatronovibrio hydrogenovorans Zhilina et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #23206]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #23206]	Cell length	1.5-2.0 µm

[Ref.: #23206]	Cell width	0.5 µm

[Ref.: #23206]	Cell shape	vibrio-shaped

[Ref.: #23206]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.198

[Ref.: #23206]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3532]

Culture medium

DESULFONATRONOVIBRIO MEDIUM (DSMZ Medium 742)

[Ref.: #3532]

Culture medium growth

[Ref.: #3532]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3532]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3532]	growth	30 °C
[Ref.: #23206]	growth	15-43 °C
[Ref.: #23206]	optimum	37 °C

[Ref.: #3532]	Temperature range	mesophilic
[Ref.: #23206]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #23206]		maximum	10.2
[Ref.: #23206]		optimum	9.5-9.7
[Ref.: #23206]	no	growth	7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3532]	Oxygen tolerance	anaerobe
[Ref.: #23206]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #23206]

Nutrition type

lithoheterotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.778

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23206]		NaCl	no	growth	<1	%(w/v)
[Ref.: #23206]		NaCl	no	growth	>12	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23206]	acetate ChEBI	+	carbon source
[Ref.: #23206]	acetate ChEBI	+	electron donor
[Ref.: #23206]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #23206]	ethanol ChEBI	-	electron donor
[Ref.: #23206]	formate ChEBI	+	electron donor
[Ref.: #23206]	fumarate ChEBI	-	electron donor
[Ref.: #23206]	glycerol ChEBI	-	electron donor
[Ref.: #23206]	lactate ChEBI	-	electron donor
[Ref.: #23206]	malate ChEBI	-	electron donor
[Ref.: #23206]	propionate ChEBI	-	electron donor
[Ref.: #23206]	pyruvate ChEBI	-	electron donor
[Ref.: #23206]	serine ChEBI	-	electron donor
[Ref.: #23206]	sulfate ChEBI	+	electron acceptor
[Ref.: #23206]	sulfite ChEBI	+	electron acceptor
[Ref.: #23206]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #23206]	yeast extract	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3532]	Sample type/isolated from	mud
[Ref.: #3532]	Geographic location (country and/or sea, region)	Lake Magadi
[Ref.: #3532]	Country	Kenya
[Ref.: #3532]	Country ISO 3 Code	KEN
[Ref.: #3532]	Continent	Africa

[Ref.: #23206]	Sample type/isolated from	sediments of an equatorial soda lake
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X99234 (>99% sequence identity) for Desulfonatronovibrio hydrogenovorans subclade from Microbeatlas

Aquatic Samples	19
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	20

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3532]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3532]	D.hydrogenovorans 16S rRNA gene	X99234	1503	ENA	53245 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfonatronovibrio hydrogenovorans DSM 9292	GCA_000686525	scaffold	GenBank	1121413 tax ID	*
[Ref.: #66792]	Desulfonatronovibrio hydrogenovorans DSM 9292	1121413.3	wgs	PATRIC	1121413 tax ID	*
[Ref.: #66792]	Desulfonatronovibrio hydrogenovorans DSM 9292	2563366506	draft	JGI IMG/M	1121413 tax ID	*

[Ref.: #23206]

GC-content

48.6 mol%

Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfonatronovibrio hydrogenovorans DSM 9292 DSM 9292 NCBI: GCA_000686525.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfonatronovibrio hydrogenovorans DSM 9292 DSM 9292 NCBI: GCA_000686525.1
[Ref.: #69480]	motile	yes	86.897	no
[Ref.: #69480]	flagellated	no	68.732	no
[Ref.: #69480]	gram-positive	no	99.216	yes
[Ref.: #69480]	anaerobic	yes	99.622	no
[Ref.: #69480]	halophile	no	53.512	no
[Ref.: #69480]	spore-forming	no	93.809	no
[Ref.: #69480]	glucose-util	no	68.121	no
[Ref.: #69480]	aerobic	no	98.82	no
[Ref.: #69480]	thermophile	no	54.235	no
[Ref.: #69480]	glucose-ferment	no	79.983	no

Availability in culture collections External links

[Ref.: #3532]

Culture collection no.

DSM 9292

[Ref.: #73539]

SI-ID 48611

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Bioenergetics of the alkaliphilic sulfate-reducing bacterium Desulfonatronovibrio hydrogenovorans.	Sydow U, Wohland P, Wolke I, Cypionka H	Microbiology (Reading)	10.1099/00221287-148-3-853	2002	*
Metabolism	Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an alkaliphilic, sulfate-reducing bacterium.	Zhilina TN, Zavarzin GA, Rainey FA, Pikuta EN, Osipov GA, Kostrikina NA	Int J Syst Bacteriol	10.1099/00207713-47-1-144	1997	*

References

#3532

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9292

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23206

T. N. ZHILINA, G. A. ZAVARZIN, F. A. RAINEY, E. N. PIKUTA, G. A. OSIPOV, N. A. KOSTRIKINA: Desulfonatronovibrio hydrogenovorans gen. nov., sp. nov., an Alkaliphilic, Sulfate-Reducing Bacterium. IJSEM 47: 144 - 149 1997 ( DOI 10.1099/00207713-47-1-144 , PubMed 8995816 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73539

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48611.1 )

* These data were automatically processed and therefore are not curated

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Desulfonatronovibrio hydrogenovorans DSM 9292 DSM 9292

Desulfonatronovibrio hydrogenovorans DSM 9292 DSM 9292

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