Name: Desulfurivibrio alkaliphilus DSM 19089
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4033

Type strain:

Species: Desulfurivibrio alkaliphilus

Culture col. no.: DSM 19089, UNIQEM U267, AHT 2

Strain history: <- D.Y. Sorokin; AHT 2

NCBI tax ID(s): 589865 (strain), 427923 (species)

SI-ID 407222

DSM 19089

Section

Desulfurivibrio alkaliphilus DSM 19089 is an anaerobe, mesophilic, motile bacterium that was isolated from sediments from hypersaline soda lake.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfurivibrio*
	Species	**Desulfurivibrio alkaliphilus**
	Full Scientific Name (LPSN)	Desulfurivibrio alkaliphilus Sorokin et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.775

[Ref.: #7881]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7881]

Culture medium

DETHIOBACTER MEDIUM (DSMZ Medium 1104)

[Ref.: #7881]

Culture medium growth

[Ref.: #7881]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7881]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7881]			growth	30 °C

[Ref.: #7881]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7881]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.798

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.987

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7881]	Sample type/isolated from	sediments from hypersaline soda lake
[Ref.: #7881]	Geographic location (country and/or sea, region)	Wadi Natrun
[Ref.: #7881]	Country	Egypt
[Ref.: #7881]	Country ISO 3 Code	EGY
[Ref.: #7881]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Aquatic	#Non-marine Saline and Alkaline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF422413 (>99% sequence identity) for Desulfurivibrio alkaliphilus subclade from Microbeatlas

Aquatic Samples	435
Soil Samples	38
Animal Samples	53
Plant Samples	2
Total Samples	528

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7881]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7881]	Desulfurivibrio alkaliphilus AHT 2 16S ribosomal RNA gene, partial sequence	EF422413	1409	ENA	589865 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfurivibrio alkaliphilus AHT2	589865.4	complete	PATRIC	589865 tax ID	*

[Ref.: #7881]	GC-content	40.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #7881]	GC-content	60.3 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfurivibrio alkaliphilus AHT2 PATRIC: 589865.4
[Ref.: #69481]	spore-forming	no	76	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfurivibrio alkaliphilus AHT2 PATRIC: 589865.4
[Ref.: #69480]	gram-positive	no	99.498	no
[Ref.: #69480]	anaerobic	yes	99.022	yes
[Ref.: #69480]	halophile	no	76.338	no
[Ref.: #69480]	spore-forming	no	91.852	no
[Ref.: #69480]	glucose-util	no	66.855	no
[Ref.: #69480]	thermophile	no	90.389	yes
[Ref.: #69480]	flagellated	no	72.403	no
[Ref.: #69480]	aerobic	no	97.671	no
[Ref.: #69480]	motile	yes	86.519	no
[Ref.: #69480]	glucose-ferment	no	80.456	no

Availability in culture collections External links

[Ref.: #7881]

Culture collection no.

DSM 19089, UNIQEM U267, AHT 2

[Ref.: #73538]

SI-ID 407222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.	Melton ED, Sorokin DY, Overmars L, Chertkov O, Clum A, Pillay M, Ivanova N, Shapiro N, Kyrpides NC, Woyke T, Lapidus AL, Muyzer G	Stand Genomic Sci	10.1186/s40793-016-0184-4	2016	*
Phylogeny	Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes.	Sorokin DY, Tourova TP, Mussmann M, Muyzer G	Extremophiles	10.1007/s00792-008-0148-8	2008	*
	Genomic analyses of bacterial porin-cytochrome gene clusters.	Shi L, Fredrickson JK, Zachara JM	Front Microbiol	10.3389/fmicb.2014.00657	2014	*

References

#7881

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19089

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73538

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407222.1 )

* These data were automatically processed and therefore are not curated

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Desulfurivibrio alkaliphilus AHT2

Desulfurivibrio alkaliphilus AHT2

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