Desulfurivibrio alkaliphilus DSM 19089 is an anaerobe, mesophilic prokaryote that was isolated from sediments from hypersaline soda lake.
anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Thermodesulfobacteriota |
| Class Desulfobulbia |
| Order Desulfobulbales |
| Family Desulfurivibrionaceae |
| Genus Desulfurivibrio |
| Species Desulfurivibrio alkaliphilus |
| Full scientific name Desulfurivibrio alkaliphilus Sorokin et al. 2008 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7881 | DETHIOBACTER MEDIUM (DSMZ Medium 1104) | Medium recipe at MediaDive | Name: DETHIOBACTER MEDIUM (DSMZ Medium 1104; with strain-specific modifications) Composition: Na2CO3 21.9123 g/l NaHCO3 7.96813 g/l NaCl 5.9761 g/l Na2S2O3 x 5 H2O 2.49004 g/l Sulfur 1.49402 g/l Sodium butyrate 1.09562 g/l K2HPO4 0.498008 g/l Na-acetate 0.398406 g/l Na2S x 9 H2O 0.239044 g/l NH4Cl 0.199203 g/l MgCl2 x 6 H2O 0.199203 g/l Yeast extract 0.0498008 g/l EDTA 0.00498008 g/l FeSO4 x 7 H2O 0.00219124 g/l NaOH 0.000498008 g/l CoCl2 x 6 H2O 0.000199203 g/l ZnSO4 x 7 H2O 9.96016e-05 g/l Pyridoxine hydrochloride 9.96016e-05 g/l (DL)-alpha-Lipoic acid 4.98008e-05 g/l p-Aminobenzoic acid 4.98008e-05 g/l Calcium D-(+)-pantothenate 4.98008e-05 g/l Thiamine HCl 4.98008e-05 g/l Riboflavin 4.98008e-05 g/l Nicotinic acid 4.98008e-05 g/l H3BO3 2.98805e-05 g/l Na2MoO4 x 2 H2O 2.98805e-05 g/l NiCl2 x 6 H2O 2.98805e-05 g/l CuCl2 x 2 H2O 2.98805e-05 g/l MnCl2 x 4 H2O 2.98805e-05 g/l Folic acid 1.99203e-05 g/l Biotin 1.99203e-05 g/l Na2WO4 x 2 H2O 3.98406e-06 g/l Na2SeO3 x 5 H2O 2.98805e-06 g/l Vitamin B12 9.96016e-07 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 7881 | positive | growth | 30 | mesophilic |
| 7881 | Oxygen toleranceanaerobe |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Aquatic | #Lake (large) | |
| #Environmental | #Aquatic | #Sediment | |
| #Condition | #Alkaline | - | |
| #Condition | #Saline | - | |
| #Environmental | #Aquatic | #Non-marine Saline and Alkaline |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 7881 | sediments from hypersaline soda lake | Wadi Natrun | Egypt | EGY | Africa |
Global distribution of 16S sequence EF422413 (>99% sequence identity) for Desulfurivibrio alkaliphilus subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM9220v1 assembly for Desulfurivibrio alkaliphilus AHT 2 | complete | 589865 | 98.81 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7881 | Desulfurivibrio alkaliphilus AHT 2 16S ribosomal RNA gene, partial sequence | EF422413 | 1409 | 589865 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.93 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 77.81 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 85.46 | no |
| 125438 | aerobic | aerobicⓘ | no | 84.95 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 79.22 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 70.26 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Microbial iron oxide respiration coupled to sulfide oxidation. | Chen SC, Li XM, Battisti N, Guan G, Montoya MA, Osvatic J, Pjevac P, Pollak S, Richter A, Schintlmeister A, Wanek W, Mussmann M, Loy A. | Nature | 10.1038/s41586-025-09467-0 | 2025 | ||
| The seminal plasma microbiome of men with testicular germ cell tumours described by small RNA sequencing. | Morup N, Main AM, Jorgensen N, Daugaard G, Juul A, Almstrup K. | Andrology | 10.1111/andr.13305 | 2023 | ||
| Pathogenicity | New insights into the evolution and metabolism of the bacterial phylum Candidatus Acidulodesulfobacteriota through metagenomics. | Ren Y, Wu YH, Chen J, Luo ZH, Xu XW. | Environ Microbiome | 10.1186/s40793-025-00779-2 | 2025 | |
| Nitrogen Recovery through Dissimilatory Nitrate Reduction to Ammonium: Impact of Environmental Factors | Ma T, Yu X, Xing C, Liu Z, Wu Z, Chen Y. | ACS Omega | 2025 | |||
| Genetics | A novel cable bacteria species with a distinct morphology and genomic potential. | Hiralal A, Ley P, van Dijk JR, Li C, Pankratov D, Alingapoyil Choyikutty J, Pankratova G, Geelhoed JS, Vasquez-Cardenas D, Reimers CE, Meysman FJR. | Appl Environ Microbiol | 10.1128/aem.02502-24 | 2025 | |
| Enzymology | Hydrogen-dependent dissimilatory nitrate reduction to ammonium enables growth of Campylobacterota isolates. | Heo H, Nguyen-Dinh T, Jung MY, Greening C, Yoon S. | ISME J | 10.1093/ismejo/wraf092 | 2025 | |
| Sulfide Oxidation Products Support Microbial Metabolism at Interface Environments in a Marine-Like Serpentinizing Spring in Northern California. | Trutschel L, Kruger B, Czaja A, Brueck M, Sackett J, Druschel G, Rowe A. | Geobiology | 10.1111/gbi.70026 | 2025 | ||
| Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia. | Sorokin DY, Tikhonova TV, Koch H, van den Berg EM, Hinderks RS, Pabst M, Dergousova NI, Soloveva AY, Kuenen GJ, Popov VO, van Loosdrecht MCM, Lucker S. | ISME J | 10.1038/s41396-023-01473-2 | 2023 | ||
| The Influence of the Microbiome on Urological Malignancies: A Systematic Review. | Porto JG, Arbelaez MCS, Pena B, Khandekar A, Malpani A, Nahar B, Punnen S, Ritch CR, Gonzalgo ML, Parekh DJ, Marcovich R, Shah HN. | Cancers (Basel) | 10.3390/cancers15204984 | 2023 | ||
| Disproportionation of Inorganic Sulfur Compounds by Mesophilic Chemolithoautotrophic Campylobacterota. | Wang S, Jiang L, Xie S, Alain K, Wang Z, Wang J, Liu D, Shao Z. | mSystems | 10.1128/msystems.00954-22 | 2023 | ||
| Metabolism | Disproportionation of elemental sulfur by haloalkaliphilic bacteria from soda lakes. | Poser A, Lohmayer R, Vogt C, Knoeller K, Planer-Friedrich B, Sorokin D, Richnow HH, Finster K. | Extremophiles | 10.1007/s00792-013-0582-0 | 2013 | |
| Metabolism | Large sulfur isotope fractionation by bacterial sulfide oxidation. | Pellerin A, Antler G, Holm SA, Findlay AJ, Crockford PW, Turchyn AV, Jorgensen BB, Finster K. | Sci Adv | 10.1126/sciadv.aaw1480 | 2019 | |
| Variations in bacterial diversity and community structure in the sediments of an alkaline lake in Inner Mongolia plateau, China. | Liu J, Yu J, Si W, Ding G, Zhang S, Gong D, Bi J. | PeerJ | 10.7717/peerj.15909 | 2023 | ||
| Genetics | Comparative genomic analysis of nickel homeostasis in cable bacteria. | Hiralal A, Geelhoed JS, Neukirchen S, Meysman FJR. | BMC Genomics | 10.1186/s12864-024-10594-7 | 2024 | |
| Metabolism | Disguised as a Sulfate Reducer: Growth of the Deltaproteobacterium Desulfurivibrio alkaliphilus by Sulfide Oxidation with Nitrate. | Thorup C, Schramm A, Findlay AJ, Finster KW, Schreiber L. | mBio | 10.1128/mbio.00671-17 | 2017 | |
| Metabolism | Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms. | Vigneron A, Cruaud P, Alsop E, de Rezende JR, Head IM, Tsesmetzis N. | ISME J | 10.1038/s41396-018-0155-4 | 2018 | |
| Enzymology | Stepwise pathway for early evolutionary assembly of dissimilatory sulfite and sulfate reduction. | Neukirchen S, Pereira IAC, Sousa FL. | ISME J | 10.1038/s41396-023-01477-y | 2023 | |
| Metabolism | Groundwater cable bacteria conserve energy by sulfur disproportionation. | Muller H, Marozava S, Probst AJ, Meckenstock RU. | ISME J | 10.1038/s41396-019-0554-1 | 2020 | |
| Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. | D'Angelo T, Goordial J, Lindsay MR, McGonigle J, Booker A, Moser D, Stepanauskus R, Orcutt BN. | ISME J | 10.1038/s41396-023-01397-x | 2023 | ||
| Metabolism | DiSCo: a sequence-based type-specific predictor of Dsr-dependent dissimilatory sulphur metabolism in microbial data. | Neukirchen S, Sousa FL. | Microb Genom | 10.1099/mgen.0.000603 | 2021 | |
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| Phylogeny | Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes. | Bray MS, Wu J, Padilla CC, Stewart FJ, Fowle DA, Henny C, Simister RL, Thompson KJ, Crowe SA, Glass JB. | Environ Microbiol Rep | 10.1111/1758-2229.12809 | 2020 | |
| Unraveling Nitrogen, Sulfur, and Carbon Metabolic Pathways and Microbial Community Transcriptional Responses to Substrate Deprivation and Toxicity Stresses in a Bioreactor Mimicking Anoxic Brackish Coastal Sediment Conditions. | Dalcin Martins P, Echeveste Medrano MJ, Arshad A, Kurth JM, Ouboter HT, Op den Camp HJM, Jetten MSM, Welte CU. | Front Microbiol | 10.3389/fmicb.2022.798906 | 2022 | ||
| Desulfurivibrio spp. mediate sulfur-oxidation coupled to Sb(V) reduction, a novel biogeochemical process. | Sun X, Kong T, Li F, Haggblom MM, Kolton M, Lan L, Lau Vetter MCY, Dong Y, Gao P, Kostka JE, Li B, Sun W. | ISME J | 10.1038/s41396-022-01201-2 | 2022 | ||
| Microbial succession in a marine sediment: Inferring interspecific microbial interactions with marine cable bacteria. | Liau P, Kim C, Saxton MA, Malkin SY. | Environ Microbiol | 10.1111/1462-2920.16230 | 2022 | ||
| Genetics | Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions. | Mickol RL, Eddie BJ, Malanoski AP, Yates MD, Tender LM, Glaven SM. | Appl Environ Microbiol | 10.1128/aem.01676-21 | 2021 | |
| Metabolism | Peatland Acidobacteria with a dissimilatory sulfur metabolism. | Hausmann B, Pelikan C, Herbold CW, Kostlbacher S, Albertsen M, Eichorst SA, Glavina Del Rio T, Huemer M, Nielsen PH, Rattei T, Stingl U, Tringe SG, Trojan D, Wentrup C, Woebken D, Pester M, Loy A. | ISME J | 10.1038/s41396-018-0077-1 | 2018 | |
| O2 partitioning of sulfur oxidizing bacteria drives acidity and thiosulfate distributions in mining waters. | Whaley-Martin KJ, Chen LX, Nelson TC, Gordon J, Kantor R, Twible LE, Marshall S, McGarry S, Rossi L, Bessette B, Baron C, Apte S, Banfield JF, Warren LA. | Nat Commun | 10.1038/s41467-023-37426-8 | 2023 | ||
| A deep-sea sulfate-reducing bacterium generates zero-valent sulfur via metabolizing thiosulfate. | Liu R, Shan Y, Xi S, Zhang X, Sun C. | mLife | 10.1002/mlf2.12038 | 2022 | ||
| Metabolism | Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. | Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ. | mBio | 10.1128/mbio.00530-17 | 2017 | |
| Molecular mechanisms underlying the structural diversity of rhamnose-rich cell wall polysaccharides in lactococci. | Guerin H, Courtin P, Guillot A, Pechoux C, Mahony J, van Sinderen D, Kulakauskas S, Cambillau C, Touze T, Chapot-Chartier MP. | J Biol Chem | 10.1016/j.jbc.2023.105578 | 2024 | ||
| Genetics | Genome analysis of a new sulphur disproportionating species Thermosulfurimonas strain F29 and comparative genomics of sulfur-disproportionating bacteria from marine hydrothermal vents. | Allioux M, Yvenou S, Godfroy A, Shao Z, Jebbar M, Alain K. | Microb Genom | 10.1099/mgen.0.000865 | 2022 | |
| Metabolism | Long-distance electron transfer by cable bacteria in aquifer sediments. | Muller H, Bosch J, Griebler C, Damgaard LR, Nielsen LP, Lueders T, Meckenstock RU. | ISME J | 10.1038/ismej.2015.250 | 2016 | |
| Metabolism | Metatranscriptomic analysis of prokaryotic communities active in sulfur and arsenic cycling in Mono Lake, California, USA. | Edwardson CF, Edwardson CF, Hollibaugh JT. | ISME J | 10.1038/ismej.2017.80 | 2017 | |
| Genetics | Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe Dissulfurirhabdus thermomarina SH388T Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents. | Allioux M, Yvenou S, Slobodkina G, Slobodkin A, Shao Z, Jebbar M, Alain K. | Microorganisms | 10.3390/microorganisms8081132 | 2020 | |
| Metabolism | The DsrD functional marker protein is an allosteric activator of the DsrAB dissimilatory sulfite reductase. | Ferreira D, Barbosa ACC, Oliveira GP, Catarino T, Venceslau SS, Pereira IAC. | Proc Natl Acad Sci U S A | 10.1073/pnas.2118880119 | 2022 | |
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| Metabolism | Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake. | Vavourakis CD, Mehrshad M, Balkema C, van Hall R, Andrei AS, Ghai R, Sorokin DY, Muyzer G. | BMC Biol | 10.1186/s12915-019-0688-7 | 2019 | |
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| Metabolism | Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium". | Zecchin S, Mueller RC, Seifert J, Stingl U, Anantharaman K, von Bergen M, Cavalca L, Pester M. | Appl Environ Microbiol | 10.1128/aem.02224-17 | 2018 | |
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| Metabolism | Characterization of a Novel Porin-Like Protein, ExtI, from Geobacter sulfurreducens and Its Implication in the Reduction of Selenite and Tellurite. | Jahan MI, Tobe R, Mihara H. | Int J Mol Sci | 10.3390/ijms19030809 | 2018 | |
| The Natural History of Teneurins: A Billion Years of Evolution in Three Key Steps. | Wides R. | Front Neurosci | 10.3389/fnins.2019.00109 | 2019 | ||
| Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. | Sharma G, Narwani T, Subramanian S. | PLoS One | 10.1371/journal.pone.0148593 | 2016 | ||
| Microbial Community Composition and Functional Capacity in a Terrestrial Ferruginous, Sulfate-Depleted Mud Volcano. | Tu TH, Wu LW, Lin YS, Imachi H, Lin LH, Wang PL. | Front Microbiol | 10.3389/fmicb.2017.02137 | 2017 | ||
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| Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane. | Wegener G, Krukenberg V, Ruff SE, Kellermann MY, Knittel K. | Front Microbiol | 10.3389/fmicb.2016.00046 | 2016 | ||
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| Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds. | Finster KW, Kjeldsen KU, Kube M, Reinhardt R, Mussmann M, Amann R, Schreiber L. | Stand Genomic Sci | 10.4056/sigs.3777412 | 2013 | ||
| Genetics | Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. | Melton ED, Sorokin DY, Overmars L, Chertkov O, Clum A, Pillay M, Ivanova N, Shapiro N, Kyrpides NC, Woyke T, Lapidus AL, Muyzer G | Stand Genomic Sci | 10.1186/s40793-016-0184-4 | 2016 | |
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| Growth physiology, genomics, and proteomics of Desulfurivibrio dismutans sp. nov., an obligately chemolithoautotrophic, sulfur disproportionating and ammonifying haloalkaliphile from soda lakes. | Sorokin DY, Merkel AY, Ziganshin RH, Kublanov IV. | Front Microbiol | 10.3389/fmicb.2025.1590477 | 2025 | ||
| Growth physiology, genomics, and proteomics of Desulfurivibrio dismutans sp. nov., an obligately chemolithoautotrophic, sulfur disproportionating and ammonifying haloalkaliphile from soda lakes | Sorokin D, Merkel A, Ziganshin R, Kublanov I. | Front Microbiol | 2025 | |||
| Physiological and comparative proteomic characterization of Desulfolithobacter dissulfuricans gen. nov., sp. nov., a novel mesophilic, sulfur-disproportionating chemolithoautotroph from a deep-sea hydrothermal vent. | Hashimoto Y, Shimamura S, Tame A, Sawayama S, Miyazaki J, Takai K, Nakagawa S. | Front Microbiol | 10.3389/fmicb.2022.1042116 | 2022 | ||
| Metabolism | Haloalkaliphilic spore-forming sulfidogens from soda lake sediments and description of Desulfitispora alkaliphila gen. nov., sp. nov. | Sorokin DY, Muyzer G. | Extremophiles | 10.1007/s00792-010-0310-y | 2010 | |
| Phylogeny | Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes. | Sorokin DY, Tourova TP, Mussmann M, Muyzer G | Extremophiles | 10.1007/s00792-008-0148-8 | 2008 |
| #7881 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19089 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive4033.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data