Name: Desulfogranum marinum 3pr10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4017

Type strain:

Species: Desulfogranum marinum

Strain Designation: 3pr10

Culture col. no.: DSM 2058, JCM 13489

Strain history: DSM 2058 <-- F. Widdel 3pr10.

NCBI tax ID(s): 453220 (species)

SI-ID 47541

DSM 2058, JCM 13489

Section

Desulfogranum marinum 3pr10 is an anaerobe, mesophilic, motile bacterium that was isolated from marine mud.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfogranum*
	Species	**Desulfogranum marinum**
	Full Scientific Name (LPSN)	Desulfogranum marinum (Kuever et al. 2013) Galushko and Kuever 2021

Synonym

Desulfobulbus marinus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.28

Information on culture and growth conditions Culture and growth conditions

[Ref.: #694]

Culture medium

DESULFOBULBUS SP. MEDIUM (MARINE) (DSMZ Medium 195b)

[Ref.: #694]

Culture medium growth

[Ref.: #694]

Culture medium link

Medium recipe at MediaDive

[Ref.: #694]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #694]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #694]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #694]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.478

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #694]	Sample type/isolated from	marine mud
[Ref.: #694]	Geographic location (country and/or sea, region)	North Sea, Jadebusen
[Ref.: #694]	Country	Germany
[Ref.: #694]	Country ISO 3 Code	DEU
[Ref.: #694]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Anaerobic mud flat of the Jadebusen
[Ref.: #67770]	Geographic location (country and/or sea, region)	North Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #694]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #694]	Desulfobulbus marinus strain 3pr10 16S ribosomal RNA gene, partial sequence	M34411	1373	ENA	453220 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfogranum marinum DSM 2058	GCA_016918565	contig	GenBank	453220 tax ID	*
[Ref.: #66792]	Desulfobulbus marinus strain DSM 2058	453220.3	wgs	PATRIC	453220 tax ID	*

[Ref.: #67770]	GC-content	47.3 mol%
[Ref.: #694]	GC-content	47.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfobulbus marinus strain DSM 2058 PATRIC: 453220.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfobulbus marinus strain DSM 2058 PATRIC: 453220.3
[Ref.: #69480]	gram-positive	no	98.962	no
[Ref.: #69480]	anaerobic	yes	95.147	no
[Ref.: #69480]	halophile	no	88.356	no
[Ref.: #69480]	spore-forming	no	93.858	no
[Ref.: #69480]	glucose-util	no	53.558	no
[Ref.: #69480]	aerobic	no	94.212	yes
[Ref.: #69480]	flagellated	yes	62.894	no
[Ref.: #69480]	thermophile	no	98.77	yes
[Ref.: #69480]	motile	yes	88.663	no
[Ref.: #69480]	glucose-ferment	no	83.437	no

Availability in culture collections External links

[Ref.: #694]

Culture collection no.

DSM 2058, JCM 13489

[Ref.: #73522]

SI-ID 47541

References

#694	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2058

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73522

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47541.1 )

* These data were automatically processed and therefore are not curated

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Desulfobulbus marinus strain DSM 2058

Desulfobulbus marinus strain DSM 2058

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