Name: Desulfogranum mediterraneum 86FS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4014

Type strain:

Species: Desulfogranum mediterraneum

Strain Designation: 86FS1

Culture col. no.: DSM 13871, JCM 15784

Strain history: DSM 13871 <-- A. Sass 86FS1.

NCBI tax ID(s): 160661 (species)

SI-ID 100625

DSM 13871, JCM 15784

Section

Desulfogranum mediterraneum 86FS1 is an anaerobe, psychrophilic, motile bacterium that was isolated from deep-sea surface sediment, 1268 m depth.

motile
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfogranum*
	Species	**Desulfogranum mediterraneum**
	Full Scientific Name (LPSN)	Desulfogranum mediterraneum (Sass et al. 2002) Galushko and Kuever 2021

Synonym

Desulfobulbus mediterraneus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.107

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5184]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #5184]

Culture medium growth

[Ref.: #5184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5184]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5184]			growth	20 °C
[Ref.: #67770]			growth	20 °C

[Ref.: #5184]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5184]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.949

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5184]	Sample type/isolated from	deep-sea surface sediment, 1268 m depth
[Ref.: #5184]	Geographic location (country and/or sea, region)	Mediterranean Sea, about 60 km off the coast of north-eastern Spain
[Ref.: #5184]	Country	Spain
[Ref.: #5184]	Country ISO 3 Code	ESP
[Ref.: #5184]	Continent	Europe
[Ref.: #5184]	Geographic location	41.2000°/2.8333°

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment in the western Mediterranean Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF354663 (>99% sequence identity) for Desulfobulbus mediterraneus subclade from Microbeatlas

Aquatic Samples	153
Soil Samples	2
Animal Samples	1
Plant Samples	1
Total Samples	157

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5184]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5184]	Desulfobulbus mediterraneus 16S ribosomal RNA gene, partial sequence	AF354663	1457	ENA	160661 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfogranum mediterraneum DSM 13871	GCA_000429965	scaffold	GenBank	1121404 tax ID
[Ref.: #66792]	Desulfobulbus mediterraneus DSM 13871	1121404.3	wgs	PATRIC	1121404 tax ID	*
[Ref.: #66792]	Desulfobulbus mediterraneus DSM 13871	2523533605	draft	JGI IMG/M	1121404 tax ID	*

[Ref.: #5184]	GC-content	58.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	58.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfogranum mediterraneum DSM 13871 DSM 13871 NCBI: GCA_000429965.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfobulbus mediterraneus DSM 13871 PATRIC: 1121404.3
[Ref.: #69480]	motile	yes	87.915	no
[Ref.: #69480]	flagellated	yes	57.231	no
[Ref.: #69480]	gram-positive	no	98.932	no
[Ref.: #69480]	anaerobic	yes	96.395	no
[Ref.: #69480]	aerobic	no	95.883	yes
[Ref.: #69480]	halophile	no	81.958	no
[Ref.: #69480]	spore-forming	no	92.168	no
[Ref.: #69480]	glucose-util	yes	52.19	no
[Ref.: #69480]	thermophile	no	97.78	yes
[Ref.: #69480]	glucose-ferment	no	85.535	no

Availability in culture collections External links

[Ref.: #5184]

Culture collection no.

DSM 13871, JCM 15784

[Ref.: #73519]

SI-ID 100625

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfobulbus mediterraneus sp. nov., a sulfate-reducing bacterium growing on mono- and disaccharides.	Sass A, Rutters H, Cypionka H, Sass H	Arch Microbiol	10.1007/s00203-002-0415-5	2002	*

References

#5184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13871

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73519

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100625.1 )

* These data were automatically processed and therefore are not curated

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Desulfogranum mediterraneum DSM 13871 DSM 13871

Desulfobulbus mediterraneus DSM 13871

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