Desulforegula conservatrix (DSM 13527, ATCC BAA-134, Mb1Pa)

Name: Desulforegula conservatrix (DSM 13527, ATCC BAA-134, Mb1Pa)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3992

Type strain

Strain Designation Mb1Pa

Culture col. no. DSM 13527 ATCC BAA-134 Mb1Pa

NCBI tax ID(s) 153026

Special Collections DSMZ

Links

Desulforegula conservatrix Mb1Pa is an anaerobe, mesophilic prokaryote that was isolated from sediment from a shallow freshwater eutrophic lake.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49484

DSM 13527,ATCC BAA-134

@ref 20215

Last LPSN update 2025-12-16 09:47:42

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfobacteria

Order Desulfobacterales

Family Desulfobacteraceae

Genus Desulforegula

Species Desulforegula conservatrix

Full scientific name Desulforegula conservatrix Rees and Patel 2001

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.9
125438	negative	96.452

Colony morphology

5076

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5076	DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)		Medium recipe at MediaDive	Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l Na-butyrate 0.997009 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5076	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

5076

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5076	sediment from a shallow freshwater eutrophic lake	New South Wales, Albury	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence AF243334 (>99% sequence identity) for Desulforegula conservatrix subclade from Microbeatlas

Aquatic Samples	2372
Soil Samples	64
Animal Samples	76
Plant Samples	18
Total Samples	2530

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5076	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42622v1 assembly for Desulforegula conservatrix Mb1Pa	scaffold	GCA_000426225	1304885.3	2523231059	1304885	40.25

Genome browser: GCA_000426225

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5076	Desulforegula conservatrix 16S ribosomal RNA gene, partial sequence	AF243334	1524		153026

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulforegula conservatrix Mb1Pa
NCBI: GCA_000426225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	no	72.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	69.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulforegula conservatrix Mb1Pa Mb1Pa
NCBI: GCA_000426225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.45	no
125438	anaerobic	anaerobicⓘ	yes	88.90	yes
125438	aerobic	aerobicⓘ	no	87.82	yes
125438	spore-forming	spore-formingⓘ	no	87.99	no
125438	thermophilic	thermophileⓘ	no	88.81	yes
125438	flagellated	motile2+ⓘ	yes	70.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulforegula conservatrix gen. nov., sp. nov., a long-chain fatty acid-oxidizing, sulfate-reducing bacterium isolated from sediments of a freshwater lake.	Rees GN, Patel BK	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1911	2001

References

#5076	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13527
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulforegula conservatrix (DSM 13527, ATCC BAA-134, Mb1Pa)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000426225

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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