Desulfocicer niacini (DSM 2650, JCM 12294, NAV-1)

Name: Desulfocicer niacini (DSM 2650, JCM 12294, NAV-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3977

Type strain

Strain Designation NAV-1

Culture col. no. DSM 2650 JCM 12294 NAV-1

NCBI tax ID(s) 2297

Special Collections DSMZ JCM

Links

Desulfocicer niacini NAV-1 is an anaerobe, mesophilic prokaryote that was isolated from marine sediment.

anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 47651

DSM 2650,JCM 12294

@ref 20215

Last LPSN update 2025-12-16 09:47:42

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfobacteria

Order Desulfobacterales

Family Desulfobacteraceae

Genus Desulfocicer

Species Desulfocicer niacini

Full scientific name Desulfocicer niacini (Kuever et al. 2006) Galushko and Kuever 2021

Synonyms (2)

"Desulfococcus niacini"
Desulfobacterium niacini

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1190	DESULFOSARCINA MEDIUM (BRACKISH WATER) (DSMZ Medium 198)		Medium recipe at MediaDive	Name: DESULFOSARCINA MEDIUM (BRACKISH WATER) (DSMZ Medium 198; with strain-specific modifications) Composition: NaCl 13.4596 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 1.99402 g/l Na-pyruvate 1.49551 g/l Na2CO3 1.49551 g/l Na-malate 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1190	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

1190

Oxygen toleranceanaerobe

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1190	marine sediment	Venice	Italy	ITA	Europe
67770	Marine mud	Rio Marin, Venice	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence FR733668 (>99% sequence identity) for Desulfobacterium niacini subclade from Microbeatlas

Aquatic Samples	79
Soil Samples	5
Animal Samples
Plant Samples
Total Samples	84

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1190	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	D.niacini 16S ribosomal rRNA	M34406	1375		2297
1190	Desulfococcus niacini partial 16S rRNA gene, type strain DSM2650T	FR733668	1551		2297

GC content

@ref	GC-content (mol%)	Method
1190	45.8
67770	45.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

References

#1190	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2650
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us