Desulfosudis oleivorans (DSM 6200, JCM 39069, Hxd3)

Name: Desulfosudis oleivorans (DSM 6200, JCM 39069, Hxd3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3970

Type strain

Strain Designation Hxd3

Culture col. no. DSM 6200 JCM 39069 Hxd3

NCBI tax ID(s) 181663

Special Collections DSMZ JCM

Links

Desulfosudis oleivorans Hxd3 is an anaerobe, mesophilic prokaryote that was isolated from mud, oil/water separator.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 48119

DSM 6200

@ref 20215

Last LPSN update 2025-12-16 09:47:41

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfobacteria

Order Desulfobacterales

Family Desulfosudaceae

Genus Desulfosudis

Species Desulfosudis oleivorans

Full scientific name Desulfosudis oleivorans Galushko and Kuever 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.514
125439	negative	95.7

Multimedia

@ref:	2527
multimedia content:	DSM_6200.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_6200.jpg
caption:	Medium 517, 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2527	DESULFOSUDIS MEDIUM (DSMZ Medium 517)		Medium recipe at MediaDive	Name: DESULFOSUDIS MEDIUM (DSMZ Medium 517) Composition: NaCl 19.9005 g/l Na2SO4 3.9801 g/l MgCl2 x 6 H2O 3.38309 g/l Na2CO3 1.49254 g/l Na2S x 9 H2O 0.39801 g/l Stearic acid 0.358209 g/l NH4Cl 0.248756 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.199005 g/l HCl 0.00248756 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Distilled water Vitamin B12 NaOH

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2527	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2527	anaerobe
125439	anaerobe	93.3

Spore formation

@ref	Spore formation	Confidence
125439		94.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2527	mud, oil/water separator	oilfield near Hamburg	Germany	DEU	Europe
67770	Oil field near Hamburg		Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1840v1 assembly for Desulfosudis oleivorans Hxd3	complete	GCA_000018405	96561.5	2503692001	96561	98.32

GC content

@ref	GC-content (mol%)	Method
2527	56	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfococcus oleovorans Hxd3
PATRIC: 96561.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.10	no
125439	motility	BacteriaNetⓘ	no	58.50	no
125439	gram_stain	BacteriaNetⓘ	negative	95.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfococcus oleovorans Hxd3
PATRIC: 96561.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.51	no
125438	anaerobic	anaerobicⓘ	yes	87.37	yes
125438	aerobic	aerobicⓘ	no	87.13	yes
125438	spore-forming	spore-formingⓘ	no	89.10	no
125438	thermophilic	thermophileⓘ	no	79.06	no
125438	flagellated	motile2+ⓘ	yes	50.14	no

Literature

References

#2527	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6200
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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